mRNA_H-elongata_contig140612.2817.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140612.2817.1
Unique NamemRNA_H-elongata_contig140612.2817.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140612.2817.1 vs. uniprot
Match: D8LNS4_ECTSI (BAX inhibitor motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.290e-40
Identity = 81/131 (61.83%), Postives = 100/131 (76.34%), Query Frame = 1 
Query:    1 GGAKVAPPTPSRGKGGN---SRPVLGPITRRGADLAENENREQGQER-RQEFAPQFLDFQSRVGFMKKVYLTVSCQLVYTGLVCTLMRGYRDPILRLLFGNGSIPQVLFFVGTIGTILFTNATLWANVDVR 381
            GGAKVAP   S   GG+   S+P+LGPITRR A  +  E  E G+E  +QEFAPQFLDF+SRVGFMKKVYLT+S QLVYTGLVC  MRGYRD IL +LFG+G++PQ+LFFV T+ TI+ T+  +W N ++R
Sbjct:   89 GGAKVAPKRTSGTGGGSDAASKPLLGPITRRKAADSAVEKGEDGKEDGQQEFAPQFLDFESRVGFMKKVYLTLSIQLVYTGLVCAAMRGYRDAILGVLFGHGNVPQILFFVSTLVTIISTHTIMWKNPELR 219
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BLAST of mRNA_H-elongata_contig140612.2817.1 vs. uniprot
Match: D8LNS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.100e-17
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:  121 GQERR---QEFAPQFLDFQSRVGFMKKVYLTVSCQLVYTGLVCTLMRGYRDPILRLLFGNGSIPQVLFFVGTIGTILFTNATLWANVDV 378
            G ERR   +EF P FLDF+SRVGF+KKV        VY GLVC  MRGYRD IL LL G G + Q+LF   T+ T +FT+A +    +V
Sbjct:   41 GVERRTVSKEFTPHFLDFESRVGFVKKV--------VYAGLVCATMRGYRDVILGLLLGYGIVQQILFISSTLVTTIFTHAIMRKKPEV 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140612.2817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNS4_ECTSI1.290e-4061.83BAX inhibitor motif-containing protein n=2 Tax=Ect... [more]
D8LNS3_ECTSI5.100e-1751.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140612contigH-elongata_contig140612:275..1368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D8LNS4
KEGG koko:K06890
GOsGO:0000322,GO:0000323,GO:0000324,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005783,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009987,GO:0010033,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023052,GO:0030968,GO:0031224,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071310
EggNOG free text desc.negative regulation of Fas signaling pathway
EggNOG OGsCOG0670@1,KOG2322@2759
Ec32 ortholog descriptionTruncated paralogue of Bax-inhibitor domain containing gene Esi0005_0161; likely pseudogene.
Ec32 orthologEc-08_006040.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.7603252-CDS-H-elongata_contig140612:274..4661622929835.7603252-CDS-H-elongata_contig140612:274..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140612 275..466 +
1691679176.9927974-CDS-H-elongata_contig140612:274..4661691679176.9927974-CDS-H-elongata_contig140612:274..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140612 275..466 +
1622929835.7706196-CDS-H-elongata_contig140612:1179..13681622929835.7706196-CDS-H-elongata_contig140612:1179..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140612 1180..1368 +
1691679177.0047512-CDS-H-elongata_contig140612:1179..13681691679177.0047512-CDS-H-elongata_contig140612:1179..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140612 1180..1368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140612.2817.1prot_H-elongata_contig140612.2817.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140612 275..1368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140612.2817.1

>prot_H-elongata_contig140612.2817.1 ID=prot_H-elongata_contig140612.2817.1|Name=mRNA_H-elongata_contig140612.2817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
GGAKVAPPTPSRGKGGNSRPVLGPITRRGADLAENENREQGQERRQEFAP
QFLDFQSRVGFMKKVYLTVSCQLVYTGLVCTLMRGYRDPILRLLFGNGSI
PQVLFFVGTIGTILFTNATLWANVDVR
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mRNA from alignment at H-elongata_contig140612:275..1368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140612.2817.1 ID=mRNA_H-elongata_contig140612.2817.1|Name=mRNA_H-elongata_contig140612.2817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1094bp|location=Sequence derived from alignment at H-elongata_contig140612:275..1368+ (Himanthalia elongata Himel1 dioecious)
GGCGGCGCTAAGGTAGCCCCCCCCACGCCGTCTCGAGGGAAGGGCGGAAA
CTCTCGCCCGGTTCTTGGACCCATCACGAGACGAGGGGCTGACCTCGCGG
AGAATGAGAATCGGGAGCAGGGGCAGGAGCGGCGGCAAGAATTCGCCCCT
CAGTTTTTGGATTTCCAGTCGCGGGTGGGTTTCATGAAAAAGGTGCGGAA
ATTACAGCTTACGGAGGTGTTTTTTTTACGTGTCACCAAAAATACCGCAC
AAAGGAAGGTTGGAAGCGCGCGCGGGGCGGTGGGGGGGAGCGGGGCGGGG
GAGTTGCATGTGCAGGGGTGTGGCTTGCGCGGTGCGTGTGTTTTTGTGCC
TGTGTATATCCCCCCTTTTTCTTTTCGATATATATATATATATATCATTC
ATTTTTACGGGAGAAAGTTACGAACTCCGCGGGAGACGCGGCGTTTAGTC
CGCGTGGATAAGATGATGGCACAGCAGACGCTCAATGCTCGAGGGTGCTT
CCTCAATGGTCCAGGCAGGCACATCATCGGTGGTTTCGCGGTTGATAACT
CCTTCCCAACAACTGTTTTGCACGAGACATCCCGCTACCGATCGACAGCA
CAACGATCGTCTCGCGGGCGAACGGAGGCGTTCTCGTGCCATGCACTGGT
GACCTAACGCGTTCGCGTCGATGCTGCCCGGCTAGCAACGCTTCTGTAGC
TTATTTTCCGCATGGACCCTCCCCATTCAACGCGGATAGAGTGGGGGGGG
GGCTCTAGGTCTGCTGGCAGCTGTGTACCGCGAAGTCACCCAGAATAACT
TGGGTTTGCTTTTGAATACAACGAATGCTATGTTGCCTCTCTCTCTGTTG
TCGCTCTCCAACGAAATCACAACAAACTCGACGGAAACATCACTTGACAA
AAAAGGTCTACCTGACCGTGAGCTGTCAGCTGGTATACACGGGCCTGGTG
TGTACGCTGATGCGTGGATACCGGGATCCGATCTTGAGGCTGCTATTCGG
GAATGGCAGCATCCCGCAAGTCCTCTTTTTCGTGGGCACCATTGGAACGA
TCCTCTTCACCAACGCGACGCTGTGGGCCAACGTGGACGTGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig140612:275..1368+

>mRNA_H-elongata_contig140612.2817.1 ID=mRNA_H-elongata_contig140612.2817.1|Name=mRNA_H-elongata_contig140612.2817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig140612:275..1368+ (Himanthalia elongata Himel1 dioecious)
GGCGGCGCTAAGGTAGCCCCCCCCACGCCGTCTCGAGGGAAGGGCGGAAA
CTCTCGCCCGGTTCTTGGACCCATCACGAGACGAGGGGCTGACCTCGCGG
AGAATGAGAATCGGGAGCAGGGGCAGGAGCGGCGGCAAGAATTCGCCCCT
CAGTTTTTGGATTTCCAGTCGCGGGTGGGTTTCATGAAAAAGGGCGGCGC
TAAGGTAGCCCCCCCCACGCCGTCTCGAGGGAAGGGCGGAAACTCTCGCC
CGGTTCTTGGACCCATCACGAGACGAGGGGCTGACCTCGCGGAGAATGAG
AATCGGGAGCAGGGGCAGGAGCGGCGGCAAGAATTCGCCCCTCAGTTTTT
GGATTTCCAGTCGCGGGTGGGTTTCATGAAAAAGGTCTACCTGACCGTGA
GCTGTCAGCTGGTATACACGGGCCTGGTGTGTACGCTGATGCGTGGATAC
CGGGATCCGATCTTGAGGCTGCTATTCGGGAATGGCAGCATCCCGCAAGT
CCTCTTTTTCGTGGGCACCATTGGAACGATCCTCTTCACCAACGCGACGC
TGTGGGCCAACGTGGACGTGAGAGTCTACCTGACCGTGAGCTGTCAGCTG
GTATACACGGGCCTGGTGTGTACGCTGATGCGTGGATACCGGGATCCGAT
CTTGAGGCTGCTATTCGGGAATGGCAGCATCCCGCAAGTCCTCTTTTTCG
TGGGCACCATTGGAACGATCCTCTTCACCAACGCGACGCTGTGGGCCAAC
GTGGACGTGAGA
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