mRNA_H-elongata_contig140515.2813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140515.2813.1
Unique NamemRNA_H-elongata_contig140515.2813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140515.2813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140515contigH-elongata_contig140515:725..1119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.474971-CDS-H-elongata_contig140515:725..8471622929835.474971-CDS-H-elongata_contig140515:725..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140515 726..847 -
1691679176.8941145-CDS-H-elongata_contig140515:725..8471691679176.8941145-CDS-H-elongata_contig140515:725..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140515 726..847 -
1622929835.4932246-CDS-H-elongata_contig140515:1043..11191622929835.4932246-CDS-H-elongata_contig140515:1043..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140515 1044..1119 -
1691679176.9035604-CDS-H-elongata_contig140515:1043..11191691679176.9035604-CDS-H-elongata_contig140515:1043..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140515 1044..1119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140515.2813.1prot_H-elongata_contig140515.2813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140515 726..1119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140515.2813.1

>prot_H-elongata_contig140515.2813.1 ID=prot_H-elongata_contig140515.2813.1|Name=mRNA_H-elongata_contig140515.2813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
EVEQLRLRFVKMEEILGEMKAAETAGDWIHLERLLSSAEASRLTAQKEFI
SAQEAFRSAKDRAAKA
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mRNA from alignment at H-elongata_contig140515:725..1119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140515.2813.1 ID=mRNA_H-elongata_contig140515.2813.1|Name=mRNA_H-elongata_contig140515.2813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=395bp|location=Sequence derived from alignment at H-elongata_contig140515:725..1119- (Himanthalia elongata Himel1 dioecious)
GAGGTGGAACAGCTACGGCTGCGTTTTGTGAAGATGGAGGAAATCCTGGG
CGAAATGAAGGCAGCGGAAACGGCAGGTAATCGATGGAAGAAAGTGATCC
GCATCCTACCAAACGGGGTCACCGTCCTGTCGCTCTGACGTCATCTCTTT
CCAAGCTCCGAATCGGGTACAGGGCCAGAAATACGCGCCAAGTTTCTGAC
GGGCGATGTCGATGCAATATCGTAAAACCCGCGTTACCCTCACGCCAAGA
TGCCCCGATTTCCCTGCTACAGGTGACTGGATTCACCTTGAGAGATTGTT
GTCAAGTGCAGAGGCAAGTCGCCTCACGGCTCAGAAAGAGTTTATTTCGG
CCCAGGAGGCGTTCCGCTCCGCAAAAGACCGGGCTGCAAAGGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig140515:725..1119-

>mRNA_H-elongata_contig140515.2813.1 ID=mRNA_H-elongata_contig140515.2813.1|Name=mRNA_H-elongata_contig140515.2813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig140515:725..1119- (Himanthalia elongata Himel1 dioecious)
GAGGTGGAACAGCTACGGCTGCGTTTTGTGAAGATGGAGGAAATCCTGGG
CGAAATGAAGGCAGCGGAAACGGCAGGAGGTGGAACAGCTACGGCTGCGT
TTTGTGAAGATGGAGGAAATCCTGGGCGAAATGAAGGCAGCGGAAACGGC
AGGTGACTGGATTCACCTTGAGAGATTGTTGTCAAGTGCAGAGGCAAGTC
GCCTCACGGCTCAGAAAGAGTTTATTTCGGCCCAGGAGGCGTTCCGCTCC
GCAAAAGACCGGGCTGCAAAGGCTGTGACTGGATTCACCTTGAGAGATTG
TTGTCAAGTGCAGAGGCAAGTCGCCTCACGGCTCAGAAAGAGTTTATTTC
GGCCCAGGAGGCGTTCCGCTCCGCAAAAGACCGGGCTGCAAAGGCT
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