mRNA_H-elongata_contig140512.2812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140512.2812.1
Unique NamemRNA_H-elongata_contig140512.2812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140512.2812.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.800e-15
Identity = 46/96 (47.92%), Postives = 56/96 (58.33%), Query Frame = 2 
Query:  140 AVYLSLKSVRAGSDTSPCTNIVMKCIFCFRGTYIWK*GLADHVARCDNEDTLVEAGTERAK----TTVWEMEENKVLKKFKVRQLRPRRVTGSLPP 415
            AV L+L S RA SDTSPCTN+V+KC  C +  YIW  G+ DHV RC   + LV  GT   K     T+ E E+ KVL K K  + R R    +LPP
Sbjct: 1131 AVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTGADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
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BLAST of mRNA_H-elongata_contig140512.2812.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.090e-6
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:    9 QMSTVCGFCGGLGCHTTINVQSGEAAPVMHSTCPYAPRKDS 131
            ++ST CGFCGG+G  TTI+   G+A P++HSTCP APR D+
Sbjct:  410 KVSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDA 450
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140512.2812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE5.800e-1547.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE1.090e-658.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140512contigH-elongata_contig140512:1187..1623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size437
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140512.2812.1prot_H-elongata_contig140512.2812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140512 1192..1344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.2667928-UTR-H-elongata_contig140512:1186..11911622929835.2667928-UTR-H-elongata_contig140512:1186..1191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140512 1187..1191 +
1691679176.8646133-UTR-H-elongata_contig140512:1186..11911691679176.8646133-UTR-H-elongata_contig140512:1186..1191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140512 1187..1191 +
1622929835.2972703-UTR-H-elongata_contig140512:1344..16231622929835.2972703-UTR-H-elongata_contig140512:1344..1623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140512 1345..1623 +
1691679176.8851814-UTR-H-elongata_contig140512:1344..16231691679176.8851814-UTR-H-elongata_contig140512:1344..1623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140512 1345..1623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.2805126-CDS-H-elongata_contig140512:1191..13441622929835.2805126-CDS-H-elongata_contig140512:1191..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140512 1192..1344 +
1691679176.8761418-CDS-H-elongata_contig140512:1191..13441691679176.8761418-CDS-H-elongata_contig140512:1191..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140512 1192..1344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140512.2812.1

>prot_H-elongata_contig140512.2812.1 ID=prot_H-elongata_contig140512.2812.1|Name=mRNA_H-elongata_contig140512.2812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MQMSTVCGFCGGLGCHTTINVQSGEAAPVMHSTCPYAPRKDSCVWLSTLA
*
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mRNA from alignment at H-elongata_contig140512:1187..1623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140512.2812.1 ID=mRNA_H-elongata_contig140512.2812.1|Name=mRNA_H-elongata_contig140512.2812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=437bp|location=Sequence derived from alignment at H-elongata_contig140512:1187..1623+ (Himanthalia elongata Himel1 dioecious)
AGGCTATGCAGATGAGCACTGTATGCGGCTTCTGCGGTGGCCTCGGATGC
CATACCACAATTAACGTCCAATCCGGCGAGGCTGCTCCCGTCATGCACTC
CACCTGTCCTTATGCTCCACGAAAAGACTCGTGTGTTTGGCTGTCTACCT
TAGCCTGAAAAGTGTGAGGGCAGGCTCGGACACCTCACCGTGCACCAACA
TCGTCATGAAGTGCATCTTCTGCTTTCGGGGGACGTACATATGGAAATAG
GGTTTGGCCGACCACGTCGCCAGATGCGACAACGAGGACACATTAGTTGA
GGCCGGTACAGAGAGGGCAAAGACTACTGTGTGGGAGATGGAGGAGAACA
AGGTGCTCAAGAAGTTCAAAGTCCGACAGCTTCGCCCTCGTCGCGTCACC
GGCAGTCTCCCCCCTGGCGCACGTAGAAGCGTGTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig140512:1187..1623+

>mRNA_H-elongata_contig140512.2812.1 ID=mRNA_H-elongata_contig140512.2812.1|Name=mRNA_H-elongata_contig140512.2812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig140512:1187..1623+ (Himanthalia elongata Himel1 dioecious)
ATGCAGATGAGCACTGTATGCGGCTTCTGCGGTGGCCTCGGATGCCATAC
CACAATTAACGTCCAATCCGGCGAGGCTGCTCCCGTCATGCACTCCACCT
GTCCTTATGCTCCACGAAAAGACTCGTGTGTTTGGCTGTCTACCTTAGCC
TGAATGCAGATGAGCACTGTATGCGGCTTCTGCGGTGGCCTCGGATGCCA
TACCACAATTAACGTCCAATCCGGCGAGGCTGCTCCCGTCATGCACTCCA
CCTGTCCTTATGCTCCACGAAAAGACTCGTGTGTTTGGCTGTCTACCTTA
GCCTGA
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