mRNA_H-elongata_contig140484.2811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140484.2811.1
Unique NamemRNA_H-elongata_contig140484.2811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: D8LCG7_ECTSI (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG7_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 3.700e-112
Identity = 171/250 (68.40%), Postives = 195/250 (78.00%), Query Frame = 1
Query:    4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVW--TRGDVRLETRDSALAPGQFAVFYSGGE 747
            G+VRLLLSPD VKDQTYFLCAL Q QLRKALFP+G +TK+++RELAESYDLPTK RKDSQ  GICFLGKLKFD+FL+H+LG +PG +VD+  G  IGEH+GLWFHTIGQRKGVGPGL PG VNLGPWYV+DKDM  NVL VTNDR+AIA PRE F+VEAL WI G PP  L +   MRL+VKTRHGPQM +C LRL P  A       +GG   +    V   TRG V L+++DSALAPGQFA FY GGE
Sbjct:  164 GRVRLLLSPDAVKDQTYFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQ--GICFLGKLKFDEFLQHYLGTSPGAIVDQT-GRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLGPWYVADKDMERNVLVVTNDREAIASPREVFRVEALQWISGRPPAELARDRSMRLRVKTRHGPQMRDCLLRLVPEVAPGDSGGRAGGAEATVEDRVGSPTRGYVNLDSKDSALAPGQFAAFYLGGE 410          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A6H5J9B2_9PHAE (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B2_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 3.840e-108
Identity = 172/250 (68.80%), Postives = 196/250 (78.40%), Query Frame = 1
Query:    4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVW--TRGDVRLETRDSALAPGQFAVFYSGGE 747
            G+VRLLLSPD VKDQTYFLCAL Q QLRKALFP+G +TK+++RELAESYDLPTK RKDSQ  GICFLGKLKFD+FL+H+LG +PG +VD+  G  IGEH+GLWFHTIGQRKGVGPGL PG VNLGPWYV+DKDM +NVL VTNDR+AIA PRE F+VEAL WI G PP  L + G MRL+VKTRHGPQM +C LRL P  A H + S   G   +    V   TRG V L+ +DSALAPGQFA FY G E
Sbjct:  564 GRVRLLLSPDAVKDQTYFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQ--GICFLGKLKFDEFLQHYLGTSPGAIVDQT-GRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLGPWYVADKDMESNVLVVTNDREAIASPREVFRVEALQWISGRPPAELARDGSMRLRVKTRHGPQMRDCFLRLVPEVA-HGDGSGGAGAEATAEDGVGSPTRGYVNLDNKDSALAPGQFAAFYLGDE 809          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A835YKA8_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKA8_9STRA)

HSP 1 Score: 251 bits (640), Expect = 2.710e-78
Identity = 135/247 (54.66%), Postives = 157/247 (63.56%), Query Frame = 1
Query:    4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPP---GAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFY 735
            G+ RLL SPD VKDQTYFLC L+Q QL +ALFPVGA TKE VR  AE ++LPTK+R DSQ  GICFLGKLKF+DFLR HLGEAPG  V+  +G  IG HRGLWFHTIGQR+GVGP L P  ++ GPW+V+ KD+ +N L VTND  A+   R  F+VE L WI       +   G   L VKTRHGP +  C LRL  P   G    EA               +     LE +DS LAPGQFA FY
Sbjct:  157 GEARLLRSPDPVKDQTYFLCGLSQAQLSRALFPVGALTKEEVRRQAERFNLPTKARPDSQ--GICFLGKLKFEDFLRAHLGEAPGPCVELETGAVIGRHRGLWFHTIGQRRGVGPVLHPTEIHRGPWFVARKDVPSNTLVVTNDYAAVNEARTQFRVEGLHWISPVAAAPVLSSGA-ELLVKTRHGPAIQRCLLRLERPEGAGEGGVEAGXXXXXXXXXXXXXTSATCTLLEGKDSGLAPGQFAAFY 400          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S0EE01_9CRYP (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE01_9CRYP)

HSP 1 Score: 253 bits (647), Expect = 7.880e-77
Identity = 135/248 (54.44%), Postives = 164/248 (66.13%), Query Frame = 1
Query:    4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSGGE 747
            G  RLL+SPD +KDQTYFLC L Q QL+ ALFP+G +TKE+VRELA  +DLPT+ RKDSQ  GICFLGKLKF+DF+ HHLGE PG VVD  +G  +GEHRGLWF+TIGQRKG+G        +LGPW+V+ KD   NVL V+N  D I GPR  F +E+++WI G  P   D++  +RL++KTRHGP + N  L LSP            GR           G V LE RDS LAPGQ+A  Y G E
Sbjct:  396 GVSRLLMSPDKIKDQTYFLCNLRQEQLKHALFPIGGYTKEQVRELAREFDLPTQKRKDSQ--GICFLGKLKFEDFVGHHLGENPGPVVDFHTGRELGEHRGLWFYTIGQRKGLGSATRR-VTHLGPWFVAGKDRDKNVLYVSNQYDTIDGPRRGFDIESINWISGEAP--RDEE--VRLRIKTRHGPGIHNGLLTLSP------------GR---------LSGRVSLEGRDSGLAPGQWAALYDGEE 615          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: L1IST2_GUITC (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1IST2_GUITC)

HSP 1 Score: 246 bits (629), Expect = 1.950e-76
Identity = 128/245 (52.24%), Postives = 161/245 (65.71%), Query Frame = 1
Query:   13 RLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSGGE 747
            RL++SPD VKDQTYFLC L Q QL+ ALFP+G +TKE+VRELA  ++LPT+ RKDSQ  GICFLGKLKF+DF+ HHLGE PG V+D  +G  +GEHRGLWF+TIGQRKG+G        +LGPW+V+ KD   N+L V+N  D I GPR SF VE ++W+ GS    L +   +RL++KTRHGP + +  L LS       +   SG               V L+ RDS LAPGQ+A  Y G E
Sbjct:  181 RLMMSPDKVKDQTYFLCNLRQDQLKHALFPIGGYTKEKVRELAREFNLPTQRRKDSQ--GICFLGKLKFEDFVGHHLGEDPGPVIDFHTGRELGEHRGLWFYTIGQRKGLGSATRK-VTHLGPWFVAGKDRERNMLYVSNQYDVIEGPRRSFDVEQINWMAGS----LPEDDALRLRIKTRHGPNIHDGLLTLS-------QGKLSG--------------RVSLDGRDSGLAPGQWAALYDGEE 397          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S2RGR0_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGR0_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.220e-74
Identity = 126/248 (50.81%), Postives = 165/248 (66.53%), Query Frame = 1
Query:    1 SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGL---DQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFY 735
            SG   L  SPD VKDQTYFL  L Q Q+  A FPVG + K ++R+LA    LPT++RKDSQ  GICFLGKLK+DDFL H+LG+APG V++  + + +G+HRGL FHTIGQR+G+G  L P  ++ GPW+V+ KD ++N L VT + DA+  PR SFQVE ++WI GSPP GL   D  G + L V+ RHGP     ++R S      R+ S+SGG+       V+   DV ++ RDS LAPGQ+A FY
Sbjct:  104 SGLQELRRSPDRVKDQTYFLSTLTQEQISSAFFPVGDYDKAQIRDLARDLALPTQARKDSQ--GICFLGKLKWDDFLEHYLGQAPGEVIELETQKILGQHRGLHFHTIGQRRGIGRVLRPDEIHRGPWFVAAKDPVSNTLFVTTNYDAVTAPRSSFQVENVNWISGSPPVGLRTEDAPGPVSLTVQVRHGPTAYPGTVRHS------RDDSNSGGQG------VF---DVSIDGRDSGLAPGQYAAFY 334          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A0G4FIA7_VITBC (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FIA7_VITBC)

HSP 1 Score: 244 bits (623), Expect = 9.800e-74
Identity = 124/249 (49.80%), Postives = 154/249 (61.85%), Query Frame = 1
Query:    1 SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSGGE 747
            +G VRL  SPD +KDQTYFLC L+Q QL  A FP+G F K RVR+LA  Y LPT SR+DSQ  GICFLGKL+++DFL H+LG+ PG +VD   GE +GEH GLW HT+GQRKG+GP L    V+ GP++V  KD   N L VTND DAI  PR+  QVE++ WI G PP  L   G   ++V+ RHGP+     +RL     +  E                    V LE +DS +APGQF  FY+G E
Sbjct:  341 NGPVRLFRSPDRIKDQTYFLCGLSQEQLAMADFPIGTFDKARVRQLARDYSLPTASRRDSQ--GICFLGKLRWEDFLTHYLGKNPGPIVDVAGGELLGEHHGLWLHTVGQRKGLGPYLRDKMVHRGPFFVVGKDPDTNTLLVTNDYDAIDRPRQELQVESIGWIAGKPPASLSTAGDAIMEVQLRHGPKTHMARVRLLDGDGESAE--------------------VHLEEKDSGIAPGQFVAFYAGDE 567          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S4DG19_HETAK (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG19_HETAK)

HSP 1 Score: 234 bits (596), Expect = 1.800e-72
Identity = 129/244 (52.87%), Postives = 156/244 (63.93%), Query Frame = 1
Query:   13 RLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGP-RES-FQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYS 738
            RLL SPD VKDQTYFL  L Q Q+ KALFPVG +TK  +RELAE +DLPTK RKDSQ  GICFLGKLKFDDFL H+LGE PG V+D  S E +GEH+GLW+HTIGQRKG+GP L  G VN GPWYV +K+M  N L V+N  + I+   RE+   V+   WI G+ P  L     M+L+VK RHGP   +  ++               G N     A++    V LE  DS +APGQFA FY+
Sbjct:   71 RLLCSPDPVKDQTYFLSTLGQDQISKALFPVGEYTKSEIRELAEKFDLPTKMRKDSQ--GICFLGKLKFDDFLAHYLGENPGLVIDEESEEVVGEHKGLWYHTIGQRKGLGPSLFAGQVNRGPWYVIEKNMRENKLIVSNSAEKISSILRENVLVVQDFQWISGNIPEKLKTAKKMKLKVKLRHGPNTQSAWIQ------------KVNGSNT----AIF----VELENNDS-IAPGQFAAFYT 291          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A448YW36_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW36_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.420e-69
Identity = 124/254 (48.82%), Postives = 165/254 (64.96%), Query Frame = 1
Query:    1 SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTN--DRDAIAGPRESFQVEALSWIGGSPPPGL----DQQG--VMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYS 738
            +G  RL  +PD VKDQ+YFLCAL Q+QL + +FP+G   K+ VR+LAE ++LP + R DSQ  G+CFLGK+KF DF++ HLGE  G++VD V+GETIGEH G+W+HT+GQRKG+GP L+P   + GPWYV  KD   N++  +N  D D  A  R  F VE +SWIGG+ P  L    D++G  V R  +K RHGP++   +L +    A+ RE    GG N        T G V LE +D  LAPGQ+ VFY+
Sbjct:  428 AGVARLFRAPDPVKDQSYFLCALEQSQLSRLIFPIGHLEKKEVRQLAEDFELPNRHRPDSQ--GLCFLGKVKFRDFMQIHLGEKAGKIVDAVTGETIGEHHGVWYHTVGQRKGIGPYLEPKAGSKGPWYVVAKDPSQNIVFASNQYDEDVFAQARSEFHVENISWIGGTEPTHLSNHRDERGETVYRFVLKIRHGPRLAAGTLTI----AEERE----GGPNHR------TGGLVALEEKDGGLAPGQYVVFYT 665          
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Match: A0A7S3RT64_EMIHU (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RT64_EMIHU)

HSP 1 Score: 220 bits (561), Expect = 1.090e-68
Identity = 119/246 (48.37%), Postives = 146/246 (59.35%), Query Frame = 1
Query:    4 GQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESYDLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEHRGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIAGPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPPGAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSG 741
            G+  L  S D  KDQTYFL  L+Q+QL K LFP+GA  K  VR LA    LP ++RKDSQ  GICFLG+L +D FLR HLGE  G V +  +GE IGEHRGLW+HT+GQR+GVGP L P +V+ GPWYV  K+M +NVL V+ +  +   PR +F  +A++WIGG+PPP         L+VK RHG      S+ L   GA                     R  V L  RD  LAPGQFA FY G
Sbjct:    1 GRAVLYQSADAHKDQTYFLSQLSQSQLAKTLFPLGALPKSDVRRLAHQRRLPNRARKDSQ--GICFLGQLDYDAFLRGHLGERRGEVREFETGEIIGEHRGLWYHTVGQRRGVGPALGPRHVSRGPWYVVRKEMDSNVLFVSREYASADKPRNAFHADAINWIGGAPPPAGAAGEPTPLRVKVRHGAASHEASVSLLDGGA---------------------RAHVSLAGRDKGLAPGQFAAFYDG 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140484.2811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCG7_ECTSI3.700e-11268.40tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A6H5J9B2_9PHAE3.840e-10868.80tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A835YKA8_9STRA2.710e-7854.66tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A7S0EE01_9CRYP7.880e-7754.44tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
L1IST2_GUITC1.950e-7652.24tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A7S2RGR0_9STRA1.220e-7450.81tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A0G4FIA7_VITBC9.800e-7449.80tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A7S4DG19_HETAK1.800e-7252.87tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A448YW36_9STRA2.420e-6948.82tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A7S3RT64_EMIHU1.090e-6848.37tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140484contigH-elongata_contig140484:34..1707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.8
Seed ortholog evalue1.3e-91
Seed eggNOG ortholog2880.D8LCG7
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K13523,ko:K21027
KEGG ReactionR02241,R09034,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,map00561,map00564,map01100,map01110,map04072
KEGG ModuleM00089
EggNOG free text desc.mitochondrial tRNA thio-modification
EggNOG OGsCOG0482@1,KOG2805@2759
EC2.3.1.51,2.8.1.14
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03016
Hectar predicted targeting categoryother localisation
Exons3
Model size747
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140484.2811.1prot_H-elongata_contig140484.2811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140484 34..1707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.1371415-CDS-H-elongata_contig140484:33..2221622929835.1371415-CDS-H-elongata_contig140484:33..222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140484 34..222 +
1691679176.8284338-CDS-H-elongata_contig140484:33..2221691679176.8284338-CDS-H-elongata_contig140484:33..222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140484 34..222 +
1622929835.1892817-CDS-H-elongata_contig140484:1083..15141622929835.1892817-CDS-H-elongata_contig140484:1083..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140484 1084..1514 +
1691679176.841959-CDS-H-elongata_contig140484:1083..15141691679176.841959-CDS-H-elongata_contig140484:1083..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140484 1084..1514 +
1622929835.2083488-CDS-H-elongata_contig140484:1580..17071622929835.2083488-CDS-H-elongata_contig140484:1580..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140484 1581..1707 +
1691679176.854736-CDS-H-elongata_contig140484:1580..17071691679176.854736-CDS-H-elongata_contig140484:1580..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140484 1581..1707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140484.2811.1

>prot_H-elongata_contig140484.2811.1 ID=prot_H-elongata_contig140484.2811.1|Name=mRNA_H-elongata_contig140484.2811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
SGQVRLLLSPDDVKDQTYFLCALNQTQLRKALFPVGAFTKERVRELAESY
DLPTKSRKDSQARGICFLGKLKFDDFLRHHLGEAPGRVVDRVSGETIGEH
RGLWFHTIGQRKGVGPGLDPGYVNLGPWYVSDKDMIANVLEVTNDRDAIA
GPRESFQVEALSWIGGSPPPGLDQQGVMRLQVKTRHGPQMMNCSLRLSPP
GAQHREASSSGGRNDSQPPAVWTRGDVRLETRDSALAPGQFAVFYSGGE
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mRNA from alignment at H-elongata_contig140484:34..1707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140484.2811.1 ID=mRNA_H-elongata_contig140484.2811.1|Name=mRNA_H-elongata_contig140484.2811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1674bp|location=Sequence derived from alignment at H-elongata_contig140484:34..1707+ (Himanthalia elongata Himel1 dioecious)
TCCGGTCAAGTCCGGCTGCTTTTGAGTCCCGATGATGTGAAGGACCAGAC GTACTTTCTCTGCGCCCTAAACCAGACGCAGCTGCGAAAGGCTCTCTTTC CCGTCGGGGCGTTCACGAAGGAGCGCGTGCGCGAGCTGGCAGAGAGCTAT GACCTGCCCACCAAGAGCCGAAAAGACTCACAGGCAAGAGTAAAAATAGC CCCTCGATTGCTCGCGTGCGGTGTTCCTTTTTCCTCGCCCCCTACGGCAG CTCAAACGAAAAACCCTTCAAACCAGGAGACTGATTTACACGTTACTAAT GCATCCAGTAATAGCTCCTCCTACCGACTAAATACGTATATAGACTTTAT GTTTCTATTCATTTTATACCACTCTCTGCCGATGGAGTCTTTCGACTTGC TTAGATTGTCGCCCTTCACCTGCTGCAACGTTGCTCATCCCGCCTCTCTT TGATCCTAAGGTATATATCTCACCATATCTCCCCGGTTGGTTCACGCCCC CCCCCTACGATGTTTTAATCGCGATGCTGCAAGTTAAGCACTCCAACTAC TACACCCCAAGTCATTATTTGAACTTTACTTACGCACGCCGGTTCTCACC TTTTTCCGCCGCTACACAGAAAAAAATGAACTAACCATGGTGGGATTCCG CGCTTAGTGGACTGCGATTAGCGATGCCGTGGATTGCCTCTCGCACGCAC GTATTGTCTAGTTTTAAACGGGTTCGAGAGTAAACCAGTCATCGCGACTC TTTGTGCCAAACCAACCGCCGTACGGCTCACCTTATTATTTATAATTTTT ACCCTTAGCGCGCTGTGTGGTGTTATGGTTTCCCATTTTTCGGCCGAATG TTTTTTTATCCGTCCACTACACTACATATTACATTGCAGTTTTTTAGTTC CGTTCTCGGCGGGAAATTTTGAAAGTTTTTGTAAGACCCCTCCTGCCTTA ACAAAATTTGTAGAAAATATTTCAGGAGGGAAGCTACTTGGGCGTTGTTG GTTACCGTTGGGGTTTTTTGCGCGCCTGTGTGGACCGCCGGAAAAAACAG GGCATATGTTTCCTCGGGAAGCTCAAGTTCGACGACTTCTTGAGGCACCA TCTCGGTGAGGCGCCGGGGAGGGTGGTCGATCGCGTGAGCGGCGAGACCA TCGGCGAGCACCGCGGGTTGTGGTTCCACACCATCGGCCAGCGGAAAGGC GTCGGGCCGGGCCTCGACCCCGGCTACGTAAACCTCGGTCCCTGGTACGT CTCCGACAAGGACATGATCGCCAACGTTCTGGAGGTCACGAACGACCGTG ATGCAATCGCCGGGCCGAGGGAATCCTTCCAGGTGGAAGCGTTGTCGTGG ATCGGTGGCTCCCCACCCCCCGGCCTCGACCAACAAGGCGTCATGCGCCT GCAGGTCAAGACGCGCCACGGTCCGCAGATGATGAACTGCAGCCTCCGCT TGTCGCCGCCAGGAGCGCAGCACCGCGAGGCGTCGGGTGCCCTGAGCGAT TCCTTTGGTGATTACTCTGACGATGATGTGTTTTGCGATCACCGCAGCAG TAGCTCCGGCGGCAGAAACGATTCGCAGCCACCGGCGGTTTGGACGCGGG GTGACGTGCGACTTGAAACCAGAGACTCCGCGCTGGCTCCGGGGCAATTT GCGGTGTTTTATTCCGGGGGGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig140484:34..1707+

>mRNA_H-elongata_contig140484.2811.1 ID=mRNA_H-elongata_contig140484.2811.1|Name=mRNA_H-elongata_contig140484.2811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig140484:34..1707+ (Himanthalia elongata Himel1 dioecious)
TCCGGTCAAGTCCGGCTGCTTTTGAGTCCCGATGATGTGAAGGACCAGAC
GTACTTTCTCTGCGCCCTAAACCAGACGCAGCTGCGAAAGGCTCTCTTTC
CCGTCGGGGCGTTCACGAAGGAGCGCGTGCGCGAGCTGGCAGAGAGCTAT
GACCTGCCCACCAAGAGCCGAAAAGACTCACAGGCAAGATCCGGTCAAGT
CCGGCTGCTTTTGAGTCCCGATGATGTGAAGGACCAGACGTACTTTCTCT
GCGCCCTAAACCAGACGCAGCTGCGAAAGGCTCTCTTTCCCGTCGGGGCG
TTCACGAAGGAGCGCGTGCGCGAGCTGGCAGAGAGCTATGACCTGCCCAC
CAAGAGCCGAAAAGACTCACAGGCAAGAGGCATATGTTTCCTCGGGAAGC
TCAAGTTCGACGACTTCTTGAGGCACCATCTCGGTGAGGCGCCGGGGAGG
GTGGTCGATCGCGTGAGCGGCGAGACCATCGGCGAGCACCGCGGGTTGTG
GTTCCACACCATCGGCCAGCGGAAAGGCGTCGGGCCGGGCCTCGACCCCG
GCTACGTAAACCTCGGTCCCTGGTACGTCTCCGACAAGGACATGATCGCC
AACGTTCTGGAGGTCACGAACGACCGTGATGCAATCGCCGGGCCGAGGGA
ATCCTTCCAGGTGGAAGCGTTGTCGTGGATCGGTGGCTCCCCACCCCCCG
GCCTCGACCAACAAGGCGTCATGCGCCTGCAGGTCAAGACGCGCCACGGT
CCGCAGATGATGAACTGCAGCCTCCGCTTGTCGCCGCCAGGAGCGCAGCA
CCGCGAGGCGGCATATGTTTCCTCGGGAAGCTCAAGTTCGACGACTTCTT
GAGGCACCATCTCGGTGAGGCGCCGGGGAGGGTGGTCGATCGCGTGAGCG
GCGAGACCATCGGCGAGCACCGCGGGTTGTGGTTCCACACCATCGGCCAG
CGGAAAGGCGTCGGGCCGGGCCTCGACCCCGGCTACGTAAACCTCGGTCC
CTGGTACGTCTCCGACAAGGACATGATCGCCAACGTTCTGGAGGTCACGA
ACGACCGTGATGCAATCGCCGGGCCGAGGGAATCCTTCCAGGTGGAAGCG
TTGTCGTGGATCGGTGGCTCCCCACCCCCCGGCCTCGACCAACAAGGCGT
CATGCGCCTGCAGGTCAAGACGCGCCACGGTCCGCAGATGATGAACTGCA
GCCTCCGCTTGTCGCCGCCAGGAGCGCAGCACCGCGAGGCCAGTAGCTCC
GGCGGCAGAAACGATTCGCAGCCACCGGCGGTTTGGACGCGGGGTGACGT
GCGACTTGAAACCAGAGACTCCGCGCTGGCTCCGGGGCAATTTGCGGTGT
TTTATTCCGGGGGGGAGCAGTAGCTCCGGCGGCAGAAACGATTCGCAGCC
ACCGGCGGTTTGGACGCGGGGTGACGTGCGACTTGAAACCAGAGACTCCG
CGCTGGCTCCGGGGCAATTTGCGGTGTTTTATTCCGGGGGGGAG
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