mRNA_H-elongata_contig14044.2807.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14044.2807.1
Unique NamemRNA_H-elongata_contig14044.2807.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.900e-31
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 MSLIIYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLFQE 186
            MS ++YEEV+L EM Y D++QMYYY+CPCGD+FEISL+DLYDGED APCPSCTLQIKVLF+E
Sbjct:    1 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEE 62
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BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.230e-23
Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   10 IIYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLF 180
            ++YEEV+LA+MT++  +QMY Y CPCGD FEISL+DL DGED APCPSCTL+I+VL+
Sbjct:    5 VVYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLY 61
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BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.060e-21
Identity = 35/58 (60.34%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLFQE 186
            +YEEV L +M Y++ + M++Y+CPCGD FEISL++L+DGED APCPSC+L+I+VL++E
Sbjct:    3 VYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEE 60
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BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: F9XA13_ZYMTI (DPH-type MB domain-containing protein (Fragment) n=3 Tax=Zymoseptoria TaxID=1047167 RepID=F9XA13_ZYMTI)

HSP 1 Score: 84.3 bits (207), Expect = 4.360e-20
Identity = 33/56 (58.93%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLF 180
            +Y+E+ + +MTY++T Q Y+Y CPCGD FEI+++DL DGED A CPSC+LQI+V+F
Sbjct:    6 MYDEIEIEDMTYDETLQTYHYPCPCGDRFEINIEDLRDGEDIAVCPSCSLQIRVIF 61
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BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: N1QMX9_SPHMS (Zf-CSL-domain-containing protein (Fragment) n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=N1QMX9_SPHMS)

HSP 1 Score: 84.0 bits (206), Expect = 4.880e-20
Identity = 33/58 (56.90%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLFQE 186
            IY+E+ + +MTY+ T Q+Y+Y CPCGD FEI+++DL +GE+ A CPSC+LQI+V+F E
Sbjct:    6 IYDEIEIEDMTYDTTLQIYHYPCPCGDRFEINIEDLREGEEIAVCPSCSLQIRVIFDE 63
[Close]
BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: A0A7R9VMJ4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VMJ4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.210e-20
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLFQE 186
            IYEEV + ++ Y+ T+Q+Y Y CPCGD+F I+L++L+DGED A CPSCTLQI V++ E
Sbjct:    3 IYEEVEIEDLDYDSTEQLYTYPCPCGDKFRITLEELWDGEDIARCPSCTLQIMVVYDE 60
[Close]
BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: A0A0S6XF65_BLOB1 (DPH-type MB domain-containing protein n=1 Tax=Fungal sp. (strain No.11243) TaxID=1603295 RepID=A0A0S6XF65_BLOB1)

HSP 1 Score: 84.0 bits (206), Expect = 7.090e-20
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLFQE 186
            IY+E+ + +MT+++T Q+Y+Y CPCGD FEI L DL DGED A CPSC+L I+V+F E
Sbjct:    5 IYDEIEIEDMTFDETLQIYHYPCPCGDRFEIGLADLRDGEDVAVCPSCSLMIRVVFDE 62
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BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: A0A139HYE0_9PEZI (DPH-type MB domain-containing protein n=4 Tax=Pseudocercospora TaxID=131324 RepID=A0A139HYE0_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 8.110e-20
Identity = 32/56 (57.14%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLF 180
            IY+E+ + +MT++ T Q+Y+Y CPCGD FEI+++DL DGE+ A CPSC+LQI+V+F
Sbjct:    6 IYDEIEIEDMTFDQTTQLYHYPCPCGDRFEINIEDLRDGEEIAVCPSCSLQIRVIF 61
[Close]
BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: A0A2P8AIP5_9PEZI (Diphthamide biosynthesis protein 3 n=1 Tax=Elsinoe australis TaxID=40998 RepID=A0A2P8AIP5_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 1.090e-19
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLFQE 186
            IY+E+ + +MTY++T Q+Y+Y CPCGD FEI L DL DGE+ A CPSC+L I+V+F E
Sbjct:    5 IYDEIEIEDMTYDETLQLYHYPCPCGDRFEIGLGDLRDGEEIAVCPSCSLMIRVIFDE 62
[Close]
BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD)

HSP 1 Score: 83.2 bits (204), Expect = 1.120e-19
Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   13 IYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCPSCTLQIKVLFQE 186
            +Y+EV + +M Y+  +Q+YYY CPCGD+F I+L +LYDGED A CPSC+L ++V+F+E
Sbjct:    3 VYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEE 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14044.2807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV69_ECTSI2.900e-3177.42DPH-type MB domain-containing protein n=2 Tax=Ecto... [more]
A0A835Z4X0_9STRA1.230e-2368.42Diphthamide biosynthesis protein 3 n=1 Tax=Tribone... [more]
A0A7S2W7Y0_9STRA1.060e-2160.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F9XA13_ZYMTI4.360e-2058.93DPH-type MB domain-containing protein (Fragment) n... [more]
N1QMX9_SPHMS4.880e-2056.90Zf-CSL-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7R9VMJ4_9STRA6.210e-2058.62Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A0S6XF65_BLOB17.090e-2058.62DPH-type MB domain-containing protein n=1 Tax=Fung... [more]
A0A139HYE0_9PEZI8.110e-2057.14DPH-type MB domain-containing protein n=4 Tax=Pseu... [more]
A0A2P8AIP5_9PEZI1.090e-1958.62Diphthamide biosynthesis protein 3 n=1 Tax=Elsinoe... [more]
K3WTP3_GLOUD1.120e-1955.17DPH-type MB domain-containing protein n=1 Tax=Glob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14044contigH-elongata_contig14044:7724..7912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.3e-23
Seed eggNOG ortholog2880.D7FV69
Preferred nameDPH3
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
EggNOG free text desc.peptidyl-diphthamide biosynthetic process from peptidyl-histidine
EggNOG OGsCOG5216@1,KOG2923@2759
EC1.2.4.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, DPH-type
Ec32 orthologEc-12_007340.1
Exons1
Model size189
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929834.9045043-CDS-H-elongata_contig14044:7723..79121622929834.9045043-CDS-H-elongata_contig14044:7723..7912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14044 7724..7912 +
1691679176.7855933-CDS-H-elongata_contig14044:7723..79121691679176.7855933-CDS-H-elongata_contig14044:7723..7912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14044 7724..7912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14044.2807.1prot_H-elongata_contig14044.2807.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14044 7724..7912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14044.2807.1

>prot_H-elongata_contig14044.2807.1 ID=prot_H-elongata_contig14044.2807.1|Name=mRNA_H-elongata_contig14044.2807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MSLIIYEEVSLAEMTYEDTDQMYYYKCPCGDEFEISLQDLYDGEDTAPCP
SCTLQIKVLFQEV
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mRNA from alignment at H-elongata_contig14044:7724..7912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14044.2807.1 ID=mRNA_H-elongata_contig14044.2807.1|Name=mRNA_H-elongata_contig14044.2807.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig14044:7724..7912+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTTAATCATATATGAGGAAGTGTCTCTCGCTGAGATGACGTACGA
GGATACCGATCAGATGTATTATTACAAGTGCCCTTGCGGCGACGAGTTCG
AGATCTCGCTTCAGGATCTCTACGATGGAGAGGACACCGCCCCGTGTCCC
AGCTGCACCCTTCAAATCAAAGTCTTGTTTCAAGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig14044:7724..7912+

>mRNA_H-elongata_contig14044.2807.1 ID=mRNA_H-elongata_contig14044.2807.1|Name=mRNA_H-elongata_contig14044.2807.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig14044:7724..7912+ (Himanthalia elongata Himel1 dioecious)
ATGTCCTTAATCATATATGAGGAAGTGTCTCTCGCTGAGATGACGTACGA
GGATACCGATCAGATGTATTATTACAAGTGCCCTTGCGGCGACGAGTTCG
AGATCTCGCTTCAGGATCTCTACGATGGAGAGGACACCGCCCCGTGTCCC
AGCTGCACCCTTCAAATCAAAGTCTTGTTTCAAGAGGTAATGTCCTTAAT
CATATATGAGGAAGTGTCTCTCGCTGAGATGACGTACGAGGATACCGATC
AGATGTATTATTACAAGTGCCCTTGCGGCGACGAGTTCGAGATCTCGCTT
CAGGATCTCTACGATGGAGAGGACACCGCCCCGTGTCCCAGCTGCACCCT
TCAAATCAAAGTCTTGTTTCAAGAGGTA
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