mRNA_H-elongata_contig14034.2804.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14034.2804.1
Unique NamemRNA_H-elongata_contig14034.2804.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: D8LK46_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK46_ECTSI)

HSP 1 Score: 523 bits (1346), Expect = 3.360e-171
Identity = 288/465 (61.94%), Postives = 343/465 (73.76%), Query Frame = 1 
Query:    1 QQTIQKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKGGLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISIDPMGVTDLSIS-KSHQGYVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEVPTLQMDITSS--LSATPATSSAATPLGTPSSSGKRSSSKFGGIRSERRRRGGSQER------------LRTQSEHHVSGYLGPKLLGLSFKTFPRRWARGGGLLRFFRDANQCGKMIEQRLRMFDFCVPLCDVTRLQLRLEAFDGGAGVV 1350
            ++ +++G+NKFNVNPK+GIAYL+D GLV DS + IC FL S  GLSKRRLGEYFGR + +AQEVL LFLKELKF  ASLDEALRAMV++FRLPGEAQQMDRIME FA RYHEENP VFS S+T W+L+FGLM+LNTDMYNR+I+ESDKMTEA+FV+NHRGIDQG D  ++LL GMYRRIK SEIRM EGDMYESEVITFVAP  SGWLKKK+    + KW R+WFVLNDAVLYYF+APQHQD+APRCIIPLEGI+I P+G TDLSI  +++QG+VKSVK  D+G+M+QG HRSF LRA+   ER+ WVDALR EVP   M++++S  LSATPATS    P+GTPS SG+RS  KF      RRR     E              RTQS+ H SG  G + + L     P +      ++ FF DA  C KMIEQ LR     + L DVTR+QL+ E   GG   +
Sbjct:  412 RKIMERGVNKFNVNPKDGIAYLIDNGLVTDSAQGICSFLCSAEGLSKRRLGEYFGRDNPKAQEVLRLFLKELKFKNASLDEALRAMVMRFRLPGEAQQMDRIMESFAVRYHEENPYVFSCSDTAWVLAFGLMMLNTDMYNRNIKESDKMTEAEFVKNHRGIDQGKDPAKELLEGMYRRIKASEIRMAEGDMYESEVITFVAPKKSGWLKKKSTGY-VGKWKRHWFVLNDAVLYYFLAPQHQDEAPRCIIPLEGINISPIGATDLSIGLRTNQGFVKSVKMADNGTMQQGTHRSFTLRADTNSERDIWVDALRAEVPAFHMELSASRSLSATPATSXXXXPIGTPSESGRRSG-KFSASGRTRRRATIDLEASSKMQPPVIRGWARTQSDQHQSG--GRRYIALFRDIGPDQQ---DNVIYFFGDAAMCDKMIEQHLRTSHGSLNLSDVTRVQLQQEEGGGGGRAI 869
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: A0A835YWD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWD7_9STRA)

HSP 1 Score: 345 bits (885), Expect = 8.750e-102
Identity = 184/353 (52.12%), Postives = 239/353 (67.71%), Query Frame = 1 
Query:   22 INKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKGGLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENP-GVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKM-----------------SEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISIDPMGVTDLSISKSHQ------------GYVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEVPTLQMDITSSLSATPA 990
            + KFN NPK+GI YL+++ ++ ++P+ +C FL  + GLSKR++GEYFGR  +  Q+V  LFL  L F G +LDEALR MV++FR+PGEAQQ+DRIME FA+R+  +NP  +FS  +T +IL+F LM+LNTDMYNR++RE +KMT  QF  N+RGIDQG DLP++LL GMY R +                  +EIRM EGDM+ESEVITFVAP +SGWL+KK+N +  A W R+WFVL D VLYYF APQ  D+APRCIIPLE I++ P+G TDL+I+                G VKSVK  D G MEQG H+ F+LRAE   ER+ W+  LR+E      +     S TPA
Sbjct:  712 VTKFNANPKDGIRYLVEQSVIRETPQDVCEFLVHETGLSKRKMGEYFGRNSAFHQQVFELFLGHLDFKGLTLDEALRRMVVRFRMPGEAQQIDRIMEHFAKRWFSDNPDSMFSCVDTAYILAFSLMMLNTDMYNRNLREGEKMTVEQFCNNNRGIDQGKDLPKELLDGMYARSRQYXXXXXXXXXXXXXXXXNEIRMDEGDMFESEVITFVAPKISGWLRKKSNGV-FAGWKRHWFVLVDGVLYYFFAPQ--DEAPRCIIPLERITVQPVGKTDLTITAXXXXXXXXXXXXXXXGLVKSVKMMDDGRMEQGSHKEFVLRAEKQDERDRWLLGLRSEASASAAEPLLEASTTPA 1061
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: A0A7S2SP39_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP39_9STRA)

HSP 1 Score: 272 bits (696), Expect = 5.800e-79
Identity = 144/313 (46.01%), Postives = 209/313 (66.77%), Query Frame = 1 
Query:   13 QKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKG-GLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGV-FSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISIDP-MGVTDLSISKSHQGYVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEV 942
            ++   KFN+ P +GI +L++K LV  +P+S+  +L  +  GLSKRRLGEY G      QEVL+ FL E  F+  +LD+ALR ++  FRLPGEAQQ+DRI+EKF+ RY E NP   FS+++TV+IL+F L++LNTD++N +I E+ KM    F+RN++GID G D+PE+ L   Y+RIK  EIRM EGD +E +V+TF+AP  +GWL K+N+  G+ +W R+WFVL++ VLYYF AP    + PR I+P++ + +        L+I  +    +K  K  D+G ME  + + F +RA N  ER  W +ALR E+
Sbjct:  132 KQAATKFNIKPSDGINFLVEKRLVEGTPKSVARYLHKRADGLSKRRLGEYLGNVKDFNQEVLTHFLAEYSFAETTLDDALRVLLRDFRLPGEAQQIDRILEKFSRRYFETNPQCGFSNADTVYILAFSLIMLNTDLHNPNIPEAKKMKLDGFLRNNKGIDDGKDVPEETLCIYYQRIKDDEIRMNEGDQWEGDVVTFMAPNKTGWLSKQNHG-GMTRWKRHWFVLSEHVLYYFEAPG--SERPRFILPMDDVRVGRGKDARVLNILGASDARIKCTKCLDNGKMELQNFKEFTIRAANPKEREEWYEALRDEL 441
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: A0A7S2SQ40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ40_9STRA)

HSP 1 Score: 257 bits (656), Expect = 2.820e-76
Identity = 136/298 (45.64%), Postives = 199/298 (66.78%), Query Frame = 1 
Query:   13 QKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKG-GLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGV-FSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISIDP-MGVTDLSISKSHQGYVKSVKKTDSGSMEQGHHRSFILRAEN 897
            ++   KFN+ P +GI +L++K LV  +P+S+  +L  +  GLSKRRLGEY G      QEVL+ FL E  F+  +LD+ALR ++  FRLPGEAQQ+DRI+EKF+ RY E NP   FS+++TV+IL+F L++LNTD++N +I E+ KM    F+RN++GID G D+PE+ L   Y+RIK  EIRM EGD +E +V+TF+AP  +GWL K+N+  G+ +W R+WFVL++ VLYYF AP    + PR I+P++ + +        L+I  +    +K  K  D+G ME  + + F + A N
Sbjct:  132 KQAATKFNIKPSDGINFLVEKRLVEGTPKSVARYLHKRADGLSKRRLGEYLGNVKDFNQEVLTHFLAEYSFAETTLDDALRVLLRDFRLPGEAQQIDRILEKFSRRYFETNPQCGFSNADTVYILAFSLIMLNTDLHNPNIPEAKKMKLDGFLRNNKGIDDGKDVPEETLCIYYQRIKDDEIRMNEGDQWEGDVVTFMAPNKTGWLSKQNHG-GMTRWKRHWFVLSEHVLYYFEAPG--SERPRFILPMDDVRVGRGKDARVLNILGASDARIKCTKCLDNGKMELQNFKEFTILAAN 426
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: W7TR99_9STRA (Cytohesin 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR99_9STRA)

HSP 1 Score: 254 bits (650), Expect = 4.480e-73
Identity = 140/325 (43.08%), Postives = 209/325 (64.31%), Query Frame = 1 
Query:    1 QQTIQKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKG-GLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHE--ENPGVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKK-NNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGI-SIDPMGVTDLSISKSHQGYVKSVK--KTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEVPTLQ 954
            ++ I++GI KFN     GI +L++ G++  +P  +  +L  +   LSK+RLGEY G   S AQEVL   L++  F G S+DEA+R  +   R+PGEAQ +DRI+  FA+R+ E   N   +++ +TV+ILSF +M+LNTD++NR++   +KM    F+RN+RGI+ G DLP +LL  +Y  IK  E+RM EGDM+ESE +TFVAP MSGWL+K+   ++G  +++R+WFVL +  L+YF +P   D+ PRCII LE + +I     T++ +  +  G +KSVK  K D  +  +G H  FI R  +  ER+ WV+A +TE    Q
Sbjct:  116 KRLIEQGIAKFNEKAAAGIDFLIENGVLQRAPADVAVWLNQQALELSKKRLGEYLGGNDSFAQEVLHQLLQDYDFQGMSIDEAMRVFINDIRMPGEAQMLDRILNAFAKRFFETTRNENQYATEDTVYILSFSIMLLNTDLHNRNLPRKEKMRLEDFIRNNRGINAGRDLPPELLSTLYYSIKRKELRMKEGDMWESESLTFVAPRMSGWLEKQLQGQLGFCRFHRFWFVLTNGCLFYFSSPV--DRNPRCIIILEAVMAIKGASSTEIILYSNGGGIIKSVKIGKRDKATT-RGQHTHFIFRTGSQKERDEWVEAFQTETEPFQ 437
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: A0A7S2GSA2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GSA2_9STRA)

HSP 1 Score: 242 bits (617), Expect = 4.950e-68
Identity = 138/332 (41.57%), Postives = 208/332 (62.65%), Query Frame = 1 
Query:   13 QKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKGG-LSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERY---HEENPGVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISIDPMGVTDLSIS--KSHQGYVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEV---PTLQMDITSSLSA 981
            ++G  KFN+ PK+GI +L++KGL+ D P+SI  +L +    LSKRRLGEY G      Q +L+ +L+ L F+G SLDEALR M+ +FRLPGEAQ +DRI+EKF++ Y     E  G+   S+ V++ +F +++LNTD++N S+ +  K+T  Q+  N+RGI+ G  +  ++   +Y +IK +EIRM EGD +E EV+TF+AP  SGWL K N+  GI +W+++WFVL++ VLYY   P   D+ PR I+P++ I +         I    +  G +K  KK   GSM+   +  F L+A +  ER  W DAL  E+   P L++    S++A
Sbjct:  179 KQGATKFNIKPKDGIKFLVEKGLIEDDPKSISEYLHAHSEVLSKRRLGEYIGGIKEENQAILTHYLEGLDFAGLSLDEALRTMLREFRLPGEAQVIDRILEKFSQAYFIARGEACGL-KDSDAVFVFAFSIIMLNTDLHNPSVEK--KLTLDQWKNNNRGINGGDHISHEVQEDVYNKIKQNEIRMQEGDQWEGEVVTFMAPKKSGWLFKMNHG-GIQRWSKHWFVLSEHVLYYLNKPN--DEHPRLILPMDNIRVGRSRSDSQVIDFVSADGGKIKCTKKLKEGSMQLQTYTDFTLKAPSPEEREEWFDALTQEINQDPVLRLQRLKSIAA 504
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: A0A6P8QG74_GEOSA (cytohesin-4 isoform X1 n=5 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8QG74_GEOSA)

HSP 1 Score: 223 bits (569), Expect = 1.100e-63
Identity = 125/314 (39.81%), Postives = 192/314 (61.15%), Query Frame = 1 
Query:   19 GINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKGGLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISI----DPMGVTDLSI-SKSHQGY-VKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEV 942
            G  KFN++P++GI +L++K L++DS   I  FL+   GLSK  +G+Y G   ++  +VL  F+++ +FS  +L +ALR  +  FRLPGEAQ++DR+ME FA RY + NPGVF S++T ++LSF +++LNT ++N +++  DK    +F+  +RGI+ GGDLPEDLL+ +Y  IK    ++ E D  +    TF  P   GWL+K   R+    W R WF+L D  LYYF      D+ PR IIPLE +S+    DP       + S S  G  +K+ K    G + +G H+S+ + A +  ER+ W++A+R  +
Sbjct:   84 GRKKFNMDPRKGIEFLIEKNLLSDSAVEIAEFLYKGEGLSKTAIGDYLGERGTKNIQVLQAFVEQHEFSDLNLVQALRQFLWSFRLPGEAQKIDRMMETFATRYCQCNPGVFQSTDTCYVLSFSVIMLNTSLHNPNVK--DKPPLQRFISMNRGINDGGDLPEDLLMNLYDSIKSEPFKIPEDDGNDL-THTFFNPEQEGWLQKLGGRV--KTWKRRWFILTDNCLYYF--EYTTDKEPRGIIPLENLSVQKVNDPKKPNCFELFSDSGNGQKIKACKTDGDGKLVEGKHQSYRMSANSSEERDLWMNAIRASI 390
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: A0A1D1VT12_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VT12_RAMVA)

HSP 1 Score: 221 bits (562), Expect = 1.720e-62
Identity = 116/316 (36.71%), Postives = 186/316 (58.86%), Query Frame = 1 
Query:    1 QQTIQKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKGGLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISIDPMGVTD-----LSISKSHQGYVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALR 933
            +Q +  G  KFN++PK+GI YL+++  +  +PE +  FL++  GL K  +G+Y G     +Q+VL  F++   FS   L  ALR  +  FRLPGEAQ++DRIME FA+ Y  +NP VFSSS++ ++LSF +++LNT ++NR+++ S + +  QF+  +R  + G   P ++LV +Y  IK  + ++ E D  +  V TF  P   GWL K+  +  +  W R WFVLND VLYYF +P   D+ P+ +IPLE + +D + V +       +       VK+ K    G +  G H ++I+ A+   E+  W+ ++R
Sbjct:   86 RQVLATGKKKFNLDPKKGIEYLVEQKAIEHTPEDVAKFLFNNEGLVKTAIGDYLGEL-GFSQQVLEEFVRLHNFSNTDLVTALRTFLWSFRLPGEAQKIDRIMETFAKHYCVQNPDVFSSSDSCYVLSFSIIMLNTTLHNRAVKSSFRQSVDQFITMNRDSNGGQAFPREMLVAIYESIKNDQFKIPEDDGTDL-VPTFENPDRQGWLSKQGGKYNVTGWKRRWFVLNDNVLYYFTSPT--DKEPKGLIPLENVKLDDIEVKEKNRHCFELLPLTNEVVKACKMGKDGKLVTGRHTNYIISADTAAEKEEWMRSIR 397
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: A0A4Y2LB00_ARAVE (Cytohesin-1 n=13 Tax=Entelegynae TaxID=74971 RepID=A0A4Y2LB00_ARAVE)

HSP 1 Score: 218 bits (556), Expect = 4.240e-62
Identity = 120/315 (38.10%), Postives = 184/315 (58.41%), Query Frame = 1 
Query:   10 IQKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKGGLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISI----DPMGVTDLSISKSHQGYVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEV 942
            +  G  KFN++PK+GI YL++ GL+ D+PE +  FL+   GL+K  +G+Y G  +    +VL  F++   F+   L +ALR  +  FRLPGEAQ++DR+MEKFA+RY + NPGVFS+++T ++LSF +++LNT ++N S++E  K T   F+  +RGI+ GGDLP +LL G+Y  IK    ++ E D  +  + TF  P   GWL K+  R     W R WF+LND  LYYF      D+ PR IIPLE + +    D        +       +K+ K    G + +G H  + + A    E++ W+ ++R  +
Sbjct:   56 LSTGKKKFNMDPKKGIEYLIEHGLLKDTPEDVAQFLYKGEGLNKTAIGDYLGERNDFNIKVLDAFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMEKFAQRYCQLNPGVFSNTDTCYVLSFAIIMLNTSLHNPSVKE--KPTVETFITMNRGINNGGDLPRELLEGLYDSIKQEPFKIPEDDGNDL-MHTFFNPDREGWLWKQGGRY--KSWKRRWFILNDKCLYYF--EYTTDKEPRGIIPLENVQVRDVQDRNKPNCFELFSVGSDVIKACKTDSEGKVVEGKHTVYRMSAATPEEKDEWMKSIRQSI 363
[Close]
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Match: T1IR78_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IR78_STRMM)

HSP 1 Score: 219 bits (557), Expect = 5.920e-62
Identity = 125/318 (39.31%), Postives = 185/318 (58.18%), Query Frame = 1 
Query:    1 QQTIQKGINKFNVNPKEGIAYLMDKGLVADSPESICGFLWSKGGLSKRRLGEYFGRAHSRAQEVLSLFLKELKFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGVFSSSETVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLLVGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNRYWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISI----DPMGVTDLSISKSHQGYVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEV 942
            Q TI  G  KFN++PK+GI YL++ GL+ D+PE I  FL+   GL+K  +G Y G  +   Q+VL  F++   F+   L +ALR  +  FRLPGEAQ++DR+ME FA+ Y + NPGVF+S++T ++LSF +++LNT ++N S++E  K +  QF+  +RGI+ GGDLP++LL+ +Y  IK    ++ E D  +  + TF  P   GWL K+  R     W R WF+LND  LYYF      D+ PR IIPLE I I    D        +  S    +K+ K    G + +G H  + + A    E+  W+  +R  +
Sbjct:   76 QMTI--GRKKFNMDPKKGIEYLIEHGLLKDTPEDIAQFLYKGEGLNKTAIGNYLGERNDFNQKVLHSFVELHDFTDLILVQALRQFLWSFRLPGEAQKIDRMMECFAQHYCKLNPGVFTSTDTCYVLSFAIIMLNTSLHNPSVKE--KPSAEQFISMNRGINDGGDLPQELLISLYDSIKREPFKIPEDDGNDL-MHTFFNPDREGWLWKQGGRY--KSWKRRWFILNDNCLYYF--EYTTDKEPRGIIPLENIQIREVNDRSKPNCFELFASGSDVIKACKTDSEGKVVEGKHTVYRMSAATPEEKEEWIKCIRQSI 384
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14034.2804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK46_ECTSI3.360e-17161.94Pleckstrin homology (PH) domain-containing protein... [more]
A0A835YWD7_9STRA8.750e-10252.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SP39_9STRA5.800e-7946.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SQ40_9STRA2.820e-7645.64Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
W7TR99_9STRA4.480e-7343.08Cytohesin 1 n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A7S2GSA2_9STRA4.950e-6841.57Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6P8QG74_GEOSA1.100e-6339.81cytohesin-4 isoform X1 n=5 Tax=Gymnophiona TaxID=8... [more]
A0A1D1VT12_RAMVA1.720e-6236.71Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A4Y2LB00_ARAVE4.240e-6238.10Cytohesin-1 n=13 Tax=Entelegynae TaxID=74971 RepID... [more]
T1IR78_STRMM5.920e-6239.31Uncharacterized protein n=1 Tax=Strigamia maritima... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14034contigH-elongata_contig14034:1601..7704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score496.1
Seed ortholog evalue2e-137
Seed eggNOG ortholog2880.D8LK46
KEGG koko:K18441
KEGG Pathwayko04072,ko04144,map04072,map04144
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0930@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons9
Model size1693
Cds size1581
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929834.266321-UTR-H-elongata_contig14034:1600..16661622929834.266321-UTR-H-elongata_contig14034:1600..1666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14034 1601..1666 +
1691679176.5718515-UTR-H-elongata_contig14034:1600..16661691679176.5718515-UTR-H-elongata_contig14034:1600..1666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14034 1601..1666 +
1622929834.4468112-UTR-H-elongata_contig14034:7658..77041622929834.4468112-UTR-H-elongata_contig14034:7658..7704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14034 7659..7704 +
1691679176.6664765-UTR-H-elongata_contig14034:7658..77041691679176.6664765-UTR-H-elongata_contig14034:7658..7704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14034 7659..7704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929834.2843757-CDS-H-elongata_contig14034:1666..17681622929834.2843757-CDS-H-elongata_contig14034:1666..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 1667..1768 +
1691679176.580864-CDS-H-elongata_contig14034:1666..17681691679176.580864-CDS-H-elongata_contig14034:1666..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 1667..1768 +
1622929834.295307-CDS-H-elongata_contig14034:2257..23911622929834.295307-CDS-H-elongata_contig14034:2257..2391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 2258..2391 +
1691679176.5880313-CDS-H-elongata_contig14034:2257..23911691679176.5880313-CDS-H-elongata_contig14034:2257..2391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 2258..2391 +
1622929834.3078563-CDS-H-elongata_contig14034:2858..29881622929834.3078563-CDS-H-elongata_contig14034:2858..2988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 2859..2988 +
1691679176.598022-CDS-H-elongata_contig14034:2858..29881691679176.598022-CDS-H-elongata_contig14034:2858..2988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 2859..2988 +
1622929834.3238642-CDS-H-elongata_contig14034:3532..36401622929834.3238642-CDS-H-elongata_contig14034:3532..3640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 3533..3640 +
1691679176.6069522-CDS-H-elongata_contig14034:3532..36401691679176.6069522-CDS-H-elongata_contig14034:3532..3640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 3533..3640 +
1622929834.340631-CDS-H-elongata_contig14034:4215..43151622929834.340631-CDS-H-elongata_contig14034:4215..4315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 4216..4315 +
1691679176.6151743-CDS-H-elongata_contig14034:4215..43151691679176.6151743-CDS-H-elongata_contig14034:4215..4315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 4216..4315 +
1622929834.3565629-CDS-H-elongata_contig14034:5482..56461622929834.3565629-CDS-H-elongata_contig14034:5482..5646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 5483..5646 +
1691679176.6239088-CDS-H-elongata_contig14034:5482..56461691679176.6239088-CDS-H-elongata_contig14034:5482..5646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 5483..5646 +
1622929834.4048262-CDS-H-elongata_contig14034:6041..63751622929834.4048262-CDS-H-elongata_contig14034:6041..6375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 6042..6375 +
1691679176.6362588-CDS-H-elongata_contig14034:6041..63751691679176.6362588-CDS-H-elongata_contig14034:6041..6375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 6042..6375 +
1622929834.4192085-CDS-H-elongata_contig14034:6635..69471622929834.4192085-CDS-H-elongata_contig14034:6635..6947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 6636..6947 +
1691679176.6484196-CDS-H-elongata_contig14034:6635..69471691679176.6484196-CDS-H-elongata_contig14034:6635..6947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 6636..6947 +
1622929834.4322093-CDS-H-elongata_contig14034:7461..76581622929834.4322093-CDS-H-elongata_contig14034:7461..7658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 7462..7658 +
1691679176.6574047-CDS-H-elongata_contig14034:7461..76581691679176.6574047-CDS-H-elongata_contig14034:7461..7658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14034 7462..7658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14034.2804.1prot_H-elongata_contig14034.2804.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14034 1667..7658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14034.2804.1

>prot_H-elongata_contig14034.2804.1 ID=prot_H-elongata_contig14034.2804.1|Name=mRNA_H-elongata_contig14034.2804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=527bp
MDKGLVADSPESICGFLWSKGGLSKRRLGEYFGRAHSRAQEVLSLFLKEL
KFSGASLDEALRAMVLKFRLPGEAQQMDRIMEKFAERYHEENPGVFSSSE
TVWILSFGLMILNTDMYNRSIRESDKMTEAQFVRNHRGIDQGGDLPEDLL
VGMYRRIKMSEIRMYEGDMYESEVITFVAPTMSGWLKKKNNRIGIAKWNR
YWFVLNDAVLYYFIAPQHQDQAPRCIIPLEGISIDPMGVTDLSISKSHQG
YVKSVKKTDSGSMEQGHHRSFILRAENLVERNAWVDALRTEVPTLQMDIT
SSLSATPATSSAATPLGTPSSSGKRSSSKFGGIRSERRRRGGSQERLRTQ
SEHHVSGYLGPKLLGLSFKTFPRRWARGGGLLRFFRDANQCGKMIEQRLR
MFDFCVPLCDVTRLQLRLEAFDGGAGVVGDRALNGDRQGRQGDSPGTRKA
EARRSMDKKHKGLVPKQFPHYRSGWNPHAQQHQRDGVPLGEYRRLRGGRH
GTRFGHSPRLDVGRHGARYRYAPRPR*
back to top

mRNA from alignment at H-elongata_contig14034:1601..7704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14034.2804.1 ID=mRNA_H-elongata_contig14034.2804.1|Name=mRNA_H-elongata_contig14034.2804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6104bp|location=Sequence derived from alignment at H-elongata_contig14034:1601..7704+ (Himanthalia elongata Himel1 dioecious)
CAGCAAACGATCCAGAAAGGCATAAACAAATTTAATGTTAACCCGAAGGA
AGGGATTGCGTATTTAATGGATAAAGGGCTAGTGGCGGACAGTCCAGAGA
GCATCTGCGGGTTCCTGTGGTCCAAGGGAGGTCTGAGCAAGCGACGACTA
GGGGAATACTTCGGGAGGGTAAGCAAGACACACCGAGCCGACGCCCATGA
TGTCGAATAGGCTTTGGCTCTTGGGATTCTTTAGGTGGCTTCTTGAGGCG
GTGTCGATTTTTTTTCCCCGAAATGGACCGCACGGGAGAATCGGCGTGTC
TTAGTAAAATGGTTACAAGTATGAATGTTCTGCTCTAATAATAGTAATAG
TAGCTTCGGAGAAAAAGGAAGATGAAACCCTCGTACCACCAGAAACGCGC
GGCGAAGGTTCTTGAAACACAACGAAGCTTGAGATTAGCGATCGGGGTCG
GACACAAATTACAGTAGTGATATCACCAACCACTGTGCCGATTTGGGTCA
ATGAGGATCCCTTACGAACGCACGCTGCCTTGGTGTAGGGTGTCCAATGT
ACAATTTAAATACTCTGTCCGTGCTGCCGCGCTCTACTGCCACTATGTCT
TCACTTTGTCGATCCGGGTGTTGAAAACTCTTATCGTCTGCCTTGTCGAC
GTACCAGGCTCACTCTAGGGCCCAGGAAGTGCTCAGCCTTTTCTTAAAGG
AGCTTAAGTTTAGCGGGGCGAGTCTGGATGAGGCACTTCGGGCGATGGTG
CTCAAATTCCGGTTGCCGGGAGAGGCACAGCAAATGGACAGGTGAAAAAT
GCACTGAAAGCTCGAGGACTGATGTGTGCTTGCGGCGAGGCTCCGGTATT
GTTGAAGCGCACCCTTGTTGCGCCGCAATGAAAAAAACAGAAAGTTATTG
CCGCCATAGCGGTAAAATACTTGCTTCACAGACGTGAGACGTGAGACGTG
AGTTTCCTGCAAGCATGGAGGGGTTCGAAGTTGAAATCACTTTTACTCCT
ACTGGATGTAATATTGCACTGTACAGCAGGTTCCATTCCACGTGGGCCCG
GCTTAATCTAGGCTAGACTTGGCCGCTGTGCAGCGTTGAAAACCCCCCGC
CACAGTCGAGGTGTGGAAGTCCTTTTCTCCAGATCGCCCCCGCATTATTG
ACGATGGCTGTAGTTCACTATCTGTATGTTGACTCTTCGTTTCCTTTCGT
TTCGCTCTGCATTACATTTTCGTCTTTGCGGTTTGTGGGGGGGGACGGGG
GGTTCCAGGATTATGGAGAAGTTTGCCGAGAGATACCACGAAGAGAATCC
GGGTGTGTTCTCTTCCTCCGAAACGGTGTGGATTCTGTCGTTTGGTTTGA
TGATTCTCAACACGGATATGTACAACAGGAGTATCAGGGTGAGAGGGTGT
CATCAGGGTCGGGGACGGGTGGGTTGGGGGCGTGCTCGTGTCTCGTAAGA
GCGACACGTTATTTTGCGTTCTTCATACCATTTTCGATATCACGCCACAT
CACGTTACATGGCGTCGCCGCGGCATGCCTGCTCCGATGACGGGATTTGC
GGATGAATATTTTCTTTTGGCCTTGGAATTGCTTCACTACCGCTGCCGCT
GACGCTTAAGGCTGGGGTACAAGGCAACGGGTGGCCAGTATCCTCCCCTC
CCTTGAGTACACTATCGGTGTTGCTCCGCCGAGCATTGCGTTCTTGTCCT
TGATCTTGTTCTTGAAGACGCGAAAGATGCCCTGCGTAGCGATCCAATCA
TTTGGCGAAATGGTCAAGCTTTTCATCGGTTGGCGAATCTTGCGCGCTGC
GCTCCTCAGCTCTCGCCCTCAATGTCTGTTGTGAGATAGCGAGATAGCCT
TGTGGTTGTTTCACGGTCCGTAGCGTTTTTACCCCGGAAGTTGAATTTCC
CATTTCTCACGTCGTTTCTAATATTCAATCAGGAGAGTGACAAGATGACC
GAGGCGCAGTTTGTGAGGAACCATCGCGGTATAGACCAGGGAGGAGATCT
CCCCGAAGACCTTCTGGTTGGAATGTACCGGCGTATCAAGGTAGGCCGTG
ACTGTTATGCCTGAGCATTCATGGGAAGATCCAAGTTTACAAGGCATTTG
TGTGTAGCTATTAATACTGGTACATTAATACCGAAATGTCTTGTCCTGGA
TATTGTATGGTATGGTATGGTATTGCAGGAAATACATGGTACAGTCTACA
GTCTGGTGGTGATTCTCTCTAGCAGTGTAGTAGTAACAGTATTACAGGGG
GTATCTACGAAAGTGTGTAATACTGAAAGTGTCTCCTGTATTAGCTAGTT
CTGCCTCGTTACGGGAAATGCATACTGTATAGACTACTAATACCATATAT
TTTTCTCAGTTATATCCTCGAGTGCGTTGTATATAATGCTAGTTTTGGCG
CGTCGAATCAAGTCCCTTTTCTAATCGTATCTTGTCAAAGCTGTTGGGAG
CCGCGATGGGCTATTAAAAGGCTGTAACTACGCAGAGTTTGTATGATTAA
AATTGCGTTTGTATTTGGATGGGCATTGTGCCGCTAGCACTCGTTCTTGT
AATACTCCGCACGATTGTATCTTATGCCAAGGGTTATATTTTTTTATATT
TTCGCGTCCGGTCAGATGTCGGAGATACGCATGTACGAAGGAGACATGTA
CGAATCTGAGGTGATCACTTTCGTGGCTCCGACTATGAGTGGATGGCTCA
AGAAGAAGAACAATCGTAAGTGTGTATTTCTTCCATCCTTCGCGATCTTG
CCGCGATCTTTGCACGCGTATATCCTCGTCCTCGTCCCGGAATCAACTGA
CCATGATACAAAATTGGAAATCCGCACGATATGCCATACGATGCTTTGAT
GTATAAGGCAGATGCACAATCCCTAGTTGTAGCACACACTAGTTATAGCA
CACACTCTGGTAGTTGTAGGAGAGGGGAGAGAGGCGTGTTGGCAACGCTG
TGGGAGTGGTTTTAAACCTAGAAGTATCATACGATAAACGAATCGTGTCG
TGCCGTACCGTATGGTTCTCGGATCTTGCGGAGTCGCTTGAGGTCGGAAA
CACGGGCGAGAATACGATACGGGAGGATACGTTGCTAACATACTGTATCC
TTCTCTTGCCTATGGTATTATCTCGAAGATACAGTATACCGCTTGTAACT
AGTTGGTCCTTTGCACCGTATAAACTTAAACTTTGACTGAACCTCTCATG
ATGTTAACAAGGCGTGGATAGTTGGAATGAGTTCAATGTTTCTTTAAATA
AATACGATGTTAAGAAGAATTCCAAGCGAACCAATGAACTTACTATGATC
TACCATGCAAAAGATTATGTACTCAAGGTTAGTAGTATTGTACACATCCT
ACCGTGGCTTGGATGTTCGGAGGGTTGGAATGAGTTCAAGGTTGCTCCCC
ATTGCAATCTCTACTTTAATCGTGCTCCTACATTTAAGTATCGATTTTGT
TTTCGATTACCAACGTAAACTTATAAATACAGGTAACCCTAACGTAGCCC
TATGTGACGGACTTATATCCCTAATTACTTAACCACTTTATGAGTAACTA
CCTCCATCCTGCTGATCTTATATAGTTAGTAGTAACACTAACATTAACAT
CATTATTGTTACCATTGTTTATGATCCCTATTGTTCCTGCTTATACCATT
GTTGGTTCCCTGGATTGCACTCACGGTGACAAGGTGTGGATGTTCGGAGA
GTTAGAATGAGCCTAAAGTCTTTGAAATAAAAATAATAATAAGTTTTTCT
AATAAAAATAGTAATAAGGTGCTTGGCCGATTACCATCAACCGTCCCCAG
AATCCCAACCCCACGCTTCCGCGATTTTTTATTGCTTACTGTGTGTGCTG
CCACTTCTTCGCTCCAACTCCATTCGACATAGGAATAGGAATTGCTAAGT
GGAATAGGTATTGGTTTGTCCTAAACGACGCCGTGCTTTACTACTTCATA
GCCCCACAACACCAGGACCAGGCACCTCGCTGCATCATACCCCTTGAGGG
GATCAGTATTGATCCCATGGGGGTAACTGATCTATCCATAAGCAAGGTGA
GACGTTTGCCTTGTTTTTCAGCCCACAAACACGCCTAGCCTTATCTTCTC
TTATCTTGCCTCGCCTTGGAGTGGTACAGCGACAGCGGTGGTTCGTTAAA
GGAAAGACAAATTTATGGCTGTTGAGTTCGGGAAATCAAGCTGGTTCGTA
GCGAACGGAACTCAACAACCCTAACCGGGGGTTGTGTTTTCGATCAGGGT
GATCCGCCGTGACCTGCCGTTATTGTCCGCCACCCTCCGCAGCGGTGACG
AATCTTGAAACTCCGTTCCATTCTCTCGTGCCGGCCCTCCTGACACCCCC
GTCACGCGGCTCCTGCGCTGTACACATAGTAGACCTAAATAGTTATGCAA
CAATCTCGCGCTGAACTTTTTCCTGTTGTATTGTCTCTCAGAGCCATCAA
GGGTACGTCAAGAGCGTGAAGAAAACTGACAGTGGAAGCATGGAGCAAGG
ACACCACCGCTCCTTCATCCTGCGCGCCGAAAACCTGGTCGAGCGTAATG
CGTGGGTTGACGCCCTCCGCACGGAAGTGCCAACACTACAAATGGACATC
ACCTCCTCGTTGTCAGCGACTCCGGCGACCTCCTCCGCAGCGACGCCACT
TGGAACTCCGTCGAGCAGCGGAAAGCGATCGAGCAGCAAGTTCGGTGGAA
TACGTTCGGAGCGTAGGCGTCGCGGGGGCAGTCAGGAGAGACTACGAACT
CAGAGCGAACATCATGTGAGTGGTTGTCAATGGGAGGTGTAGTGTGCCGT
GCCTCACCGCTCTCTTCCACGGTTGAGTTTGCGATACAGTGCACATCGGT
GGCGTGTTCGAATCCCGTAGGTAGCGGTGAGCATCGATAGTATCTTCCCG
CAAACGTACAGTATTCCTCGTGACGAGAAAGAACGAGAAGATATTCCTCT
ATTGCAGCTCTAAACCATCATAATATATTTCACCCCCCCCCCAAACAACA
ACAAAAATGCGTGCGCGTGGATTGCGCCTCGTAAGACTTGGGGCCAAAGC
TACTTGGGCTCTCTTTCAAGACGTTTCCAAGGCGTTGGGCTCGAGGAGGA
GGACTTTTGCGATTTTTCCGCGACGCCAACCAGTGCGGTAAGATGATCGA
GCAGCGTCTGCGAATGTTTGACTTTTGTGTGCCCCTGTGCGACGTGACGC
GGCTTCAGCTGCGGCTCGAAGCTTTCGACGGAGGCGCTGGGGTGGTGGGT
GATCGCGCCTTAAATGGGGACCGGCAAGGGCGCCAGGGAGACAGTCCTGG
TACTCGAAAAGCAGAAGCACGTCGCTCTATGGATAAGAAACATAAAGGTG
TGGAAACCGCTCGCGCTTCCAAGGTGGGCGAATTACTTTTTACCCTTCGC
CCGCCTCGGACGAGCGAGCGAGTCTCACACCTTAATGTTTATTTTCCACG
AAGCGACATAATTCTGCTCTTCAAGAACGATGACCGTCTCCATGGCGCCC
TTGCCGGTTCCCGTCTGAGGCACAATCACCCCCCGCCTATGTCGGCGCCT
TTGAGCGACAGCTTAAAACCGCGTCACGTCGCACATGGGAACAAGTGCGA
CGTTCGCAAACGCTGCTCTATCATTTTGTTGTGCTGGCTGGCACCGCCGA
AGTGCAACAAGTCCTCCTCCTCAAGCCCAACACCGGTCTCGCATATTTTT
CGCGTCGCGGGTTGGCCAGCATAAATGTTTGAACGAGAAAAAGCGGACGG
ATGGACGAGTGCACCTTAGGCATGGTTGGTGTTTTTACCTTGTGTGCTAA
TGTTTCTACGTTATTTCTTCGATGCTGTTCGTGTTTCCTCTCGCCCCGTC
TGTTCGAGCAGGACTGGTACCCAAACAGTTCCCACACTATCGGAGCGGAT
GGAACCCCCATGCCCAGCAGCATCAGCGAGACGGCGTTCCCCTCGGTGAA
TACCGTCGACTCAGGGGTGGACGACATGGTACCCGCTTCGGGCATTCACC
TCGACTCGACGTTGGACGACATGGTGCCCGCTATCGGTACGCACCCAGAC
CACGTTAGACGCTGTTACCACCCCAAAGACGTAGACGATGTGTTCGTGCC
CGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14034:1601..7704+

>mRNA_H-elongata_contig14034.2804.1 ID=mRNA_H-elongata_contig14034.2804.1|Name=mRNA_H-elongata_contig14034.2804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3162bp|location=Sequence derived from alignment at H-elongata_contig14034:1601..7704+ (Himanthalia elongata Himel1 dioecious)
ATGGATAAAGGGCTAGTGGCGGACAGTCCAGAGAGCATCTGCGGGTTCCT
GTGGTCCAAGGGAGGTCTGAGCAAGCGACGACTAGGGGAATACTTCGGGA
GGATGGATAAAGGGCTAGTGGCGGACAGTCCAGAGAGCATCTGCGGGTTC
CTGTGGTCCAAGGGAGGTCTGAGCAAGCGACGACTAGGGGAATACTTCGG
GAGGGCTCACTCTAGGGCCCAGGAAGTGCTCAGCCTTTTCTTAAAGGAGC
TTAAGTTTAGCGGGGCGAGTCTGGATGAGGCACTTCGGGCGATGGTGCTC
AAATTCCGGTTGCCGGGAGAGGCACAGCAAATGGACAGGCTCACTCTAGG
GCCCAGGAAGTGCTCAGCCTTTTCTTAAAGGAGCTTAAGTTTAGCGGGGC
GAGTCTGGATGAGGCACTTCGGGCGATGGTGCTCAAATTCCGGTTGCCGG
GAGAGGCACAGCAAATGGACAGGATTATGGAGAAGTTTGCCGAGAGATAC
CACGAAGAGAATCCGGGTGTGTTCTCTTCCTCCGAAACGGTGTGGATTCT
GTCGTTTGGTTTGATGATTCTCAACACGGATATGTACAACAGGAGTATCA
GGGATTATGGAGAAGTTTGCCGAGAGATACCACGAAGAGAATCCGGGTGT
GTTCTCTTCCTCCGAAACGGTGTGGATTCTGTCGTTTGGTTTGATGATTC
TCAACACGGATATGTACAACAGGAGTATCAGGGAGAGTGACAAGATGACC
GAGGCGCAGTTTGTGAGGAACCATCGCGGTATAGACCAGGGAGGAGATCT
CCCCGAAGACCTTCTGGTTGGAATGTACCGGCGTATCAAGGAGAGTGACA
AGATGACCGAGGCGCAGTTTGTGAGGAACCATCGCGGTATAGACCAGGGA
GGAGATCTCCCCGAAGACCTTCTGGTTGGAATGTACCGGCGTATCAAGAT
GTCGGAGATACGCATGTACGAAGGAGACATGTACGAATCTGAGGTGATCA
CTTTCGTGGCTCCGACTATGAGTGGATGGCTCAAGAAGAAGAACAATCAT
GTCGGAGATACGCATGTACGAAGGAGACATGTACGAATCTGAGGTGATCA
CTTTCGTGGCTCCGACTATGAGTGGATGGCTCAAGAAGAAGAACAATCGA
ATAGGAATTGCTAAGTGGAATAGGTATTGGTTTGTCCTAAACGACGCCGT
GCTTTACTACTTCATAGCCCCACAACACCAGGACCAGGCACCTCGCTGCA
TCATACCCCTTGAGGGGATCAGTATTGATCCCATGGGGGTAACTGATCTA
TCCATAAGCAAGGAATAGGAATTGCTAAGTGGAATAGGTATTGGTTTGTC
CTAAACGACGCCGTGCTTTACTACTTCATAGCCCCACAACACCAGGACCA
GGCACCTCGCTGCATCATACCCCTTGAGGGGATCAGTATTGATCCCATGG
GGGTAACTGATCTATCCATAAGCAAGAGCCATCAAGGGTACGTCAAGAGC
GTGAAGAAAACTGACAGTGGAAGCATGGAGCAAGGACACCACCGCTCCTT
CATCCTGCGCGCCGAAAACCTGGTCGAGCGTAATGCGTGGGTTGACGCCC
TCCGCACGGAAGTGCCAACACTACAAATGGACATCACCTCCTCGTTGTCA
GCGACTCCGGCGACCTCCTCCGCAGCGACGCCACTTGGAACTCCGTCGAG
CAGCGGAAAGCGATCGAGCAGCAAGTTCGGTGGAATACGTTCGGAGCGTA
GGCGTCGCGGGGGCAGTCAGGAGAGACTACGAACTCAGAGCGAACATCAT
GTGAGTGGTTAGCCATCAAGGGTACGTCAAGAGCGTGAAGAAAACTGACA
GTGGAAGCATGGAGCAAGGACACCACCGCTCCTTCATCCTGCGCGCCGAA
AACCTGGTCGAGCGTAATGCGTGGGTTGACGCCCTCCGCACGGAAGTGCC
AACACTACAAATGGACATCACCTCCTCGTTGTCAGCGACTCCGGCGACCT
CCTCCGCAGCGACGCCACTTGGAACTCCGTCGAGCAGCGGAAAGCGATCG
AGCAGCAAGTTCGGTGGAATACGTTCGGAGCGTAGGCGTCGCGGGGGCAG
TCAGGAGAGACTACGAACTCAGAGCGAACATCATGTGAGTGGTTACTTGG
GGCCAAAGCTACTTGGGCTCTCTTTCAAGACGTTTCCAAGGCGTTGGGCT
CGAGGAGGAGGACTTTTGCGATTTTTCCGCGACGCCAACCAGTGCGGTAA
GATGATCGAGCAGCGTCTGCGAATGTTTGACTTTTGTGTGCCCCTGTGCG
ACGTGACGCGGCTTCAGCTGCGGCTCGAAGCTTTCGACGGAGGCGCTGGG
GTGGTGGGTGATCGCGCCTTAAATGGGGACCGGCAAGGGCGCCAGGGAGA
CAGTCCTGGTACTCGAAAAGCAGAAGCACGTCGCTCTATGGATAAGAAAC
ATAAAGACTTGGGGCCAAAGCTACTTGGGCTCTCTTTCAAGACGTTTCCA
AGGCGTTGGGCTCGAGGAGGAGGACTTTTGCGATTTTTCCGCGACGCCAA
CCAGTGCGGTAAGATGATCGAGCAGCGTCTGCGAATGTTTGACTTTTGTG
TGCCCCTGTGCGACGTGACGCGGCTTCAGCTGCGGCTCGAAGCTTTCGAC
GGAGGCGCTGGGGTGGTGGGTGATCGCGCCTTAAATGGGGACCGGCAAGG
GCGCCAGGGAGACAGTCCTGGTACTCGAAAAGCAGAAGCACGTCGCTCTA
TGGATAAGAAACATAAAGGACTGGTACCCAAACAGTTCCCACACTATCGG
AGCGGATGGAACCCCCATGCCCAGCAGCATCAGCGAGACGGCGTTCCCCT
CGGTGAATACCGTCGACTCAGGGGTGGACGACATGGTACCCGCTTCGGGC
ATTCACCTCGACTCGACGTTGGACGACATGGTGCCCGCTATCGGTACGCA
CCCAGACCACGTTAGGACTGGTACCCAAACAGTTCCCACACTATCGGAGC
GGATGGAACCCCCATGCCCAGCAGCATCAGCGAGACGGCGTTCCCCTCGG
TGAATACCGTCGACTCAGGGGTGGACGACATGGTACCCGCTTCGGGCATT
CACCTCGACTCGACGTTGGACGACATGGTGCCCGCTATCGGTACGCACCC
AGACCACGTTAG
back to top