mRNA_H-elongata_contig140292.2800.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140292.2800.1
Unique NamemRNA_H-elongata_contig140292.2800.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140292.2800.1 vs. uniprot
Match: A0A6H5K0L5_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0L5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.600e-38
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 GYFSLELVYDPKAPRSYPSGGPFQYLGLTLPSTPATVAYNVDAAGGSMVPHWFGTKDFVEATSPSGTTIRVKEGKR 228
            GYFSLELVYDPKAP  Y +GGPFQYLGLTL ST AT+AY VDAAGG++VPHWFGTKDFVEATSPSGTT+RVKEGKR
Sbjct:  155 GYFSLELVYDPKAPPGYSTGGPFQYLGLTLSSTLATIAYKVDAAGGTVVPHWFGTKDFVEATSPSGTTVRVKEGKR 230
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BLAST of mRNA_H-elongata_contig140292.2800.1 vs. uniprot
Match: A0A7S0U7W2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U7W2_HEMAN)

HSP 1 Score: 66.2 bits (160), Expect = 3.140e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 GYFSLELVYDPKAPRSYPSGGPFQYLGLTLPSTPATVAYNVDAAGGSMVPHWFGTKDFVEATSPSGTTIRVKEGK 225
            G+FSLE+    + PR +  G   Q+L L LP +   +   V+ AGGS+VP WFGT DFVE  SPSG   R+++ K
Sbjct:  165 GHFSLEIT---EGPRKFDIGTGLQHLNLVLPPSTDRIL-KVEDAGGSVVPRWFGTSDFVEVQSPSGYVARIQQAK 235
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BLAST of mRNA_H-elongata_contig140292.2800.1 vs. uniprot
Match: A0A7S0W5Z1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W5Z1_9CRYP)

HSP 1 Score: 63.5 bits (153), Expect = 3.430e-10
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:    1 GYFSLELVYDPKAPRSYPSGGPFQYLGLTLPSTPATVAYNVDAAGGSMVPHWFGTKDFVEATSPSGTTIRVKEGK 225
            G+FSLE+    + PR    G   Q+L L LP +   +   V+ AGGS+VP WFGT DF+E  SPSG   R+++ K
Sbjct:  157 GHFSLEIT---EGPRKADIGTGLQHLDLVLPPSTDRIL-KVEDAGGSVVPRWFGTADFIEVQSPSGYVARIRQAK 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140292.2800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0L5_9PHAE1.600e-3885.53VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S0U7W2_HEMAN3.140e-1145.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0W5Z1_9CRYP3.430e-1044.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140292contigH-elongata_contig140292:28..950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D7FU48
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLactoylglutathione lyase
Ec32 orthologEc-25_000670.1
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.789975-CDS-H-elongata_contig140292:27..1231622929833.789975-CDS-H-elongata_contig140292:27..123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140292 28..123 -
1691679176.344571-CDS-H-elongata_contig140292:27..1231691679176.344571-CDS-H-elongata_contig140292:27..123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140292 28..123 -
1622929833.8152606-CDS-H-elongata_contig140292:818..9501622929833.8152606-CDS-H-elongata_contig140292:818..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140292 819..950 -
1691679176.3552952-CDS-H-elongata_contig140292:818..9501691679176.3552952-CDS-H-elongata_contig140292:818..950Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140292 819..950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140292.2800.1prot_H-elongata_contig140292.2800.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140292 28..950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140292.2800.1

>prot_H-elongata_contig140292.2800.1 ID=prot_H-elongata_contig140292.2800.1|Name=mRNA_H-elongata_contig140292.2800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
GYFSLELVYDPKAPRSYPSGGPFQYLGLTLPSTPATVAYNVDAAGGSMVP
HWFGTKDFVEATSPSGTTIRVKEGKR
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mRNA from alignment at H-elongata_contig140292:28..950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140292.2800.1 ID=mRNA_H-elongata_contig140292.2800.1|Name=mRNA_H-elongata_contig140292.2800.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=923bp|location=Sequence derived from alignment at H-elongata_contig140292:28..950- (Himanthalia elongata Himel1 dioecious)
GGGTATTTCTCCCTTGAGCTTGTGTACGACCCGAAGGCGCCCCGAAGTTA
TCCTTCGGGGGGTCCTTTCCAGTACCTCGGTCTGACTCTTCCCTCGACTC
CTGCCACGGTCGCCTACAACGTGGATGCGGCGGTGAGTGCTGGCTTTATC
CCACTAGGCTCTATTTCCTGTACCCGGGATGGGACGATTTAATGCTATCT
ATTTAATGCTATTTAATGCTATTTAATGCTATCTATTTAATGCTATCTAT
TTAATGCTATTTAATGCTATTTAATGCTATTTAATGCTATTTAATGCTAT
CTAATGCTATTTAATGCTATTTAATGCTATCTATTTAATGCTATCTGTGG
CTCAACGCCGTCGGTGCCTGGAAAGCTCTTGACGCCGGGTGTTTACCGCT
GACTCTGATTCCCCCTCTAATCTAGAGAAAATGTACGCAGTAGAGCTTGT
GCATCCGCCACGGCATCAATCAAGCGGATTTCCTCGCTCCAATGCACACA
GAGCTAACTCTAGCTGAAGGGAATTGGCTGACGCTCGTATCGTATGTTCT
TTTGCCAACCCCCCCCCCACGTCACTCTTAACCCAGCTTTTGCCTTACCC
GAGTGTGGAGGTCACATATGCAACACGCCGCTGTAAAAATCCCTCGCGTT
ACAATTGCAAAAAATATCGCGAGGCGCGCCTTCCCCTTATTCCCCTTATA
CAATACTGAACTGGTAAGTTGTGCTATTGTGTCTTCGCTTCCTCCGCCGT
GTACGCCCACGCCTACGGCTACGGCCTCGCTCGCTCGCTCTGGGGATCGC
CCTTTCCCTCTATATATTCCTCCTTAGGGTGGATCCATGGTACCGCACTG
GTTCGGGACGAAGGACTTCGTGGAGGCGACGTCGCCCAGCGGCACCACCA
TCCGTGTGAAGGAGGGCAAGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig140292:28..950-

>mRNA_H-elongata_contig140292.2800.1 ID=mRNA_H-elongata_contig140292.2800.1|Name=mRNA_H-elongata_contig140292.2800.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig140292:28..950- (Himanthalia elongata Himel1 dioecious)
GGGTATTTCTCCCTTGAGCTTGTGTACGACCCGAAGGCGCCCCGAAGTTA
TCCTTCGGGGGGTCCTTTCCAGTACCTCGGTCTGACTCTTCCCTCGACTC
CTGCCACGGTCGCCTACAACGTGGATGCGGCGGGGTATTTCTCCCTTGAG
CTTGTGTACGACCCGAAGGCGCCCCGAAGTTATCCTTCGGGGGGTCCTTT
CCAGTACCTCGGTCTGACTCTTCCCTCGACTCCTGCCACGGTCGCCTACA
ACGTGGATGCGGCGGGTGGATCCATGGTACCGCACTGGTTCGGGACGAAG
GACTTCGTGGAGGCGACGTCGCCCAGCGGCACCACCATCCGTGTGAAGGA
GGGCAAGCGCGGTGGATCCATGGTACCGCACTGGTTCGGGACGAAGGACT
TCGTGGAGGCGACGTCGCCCAGCGGCACCACCATCCGTGTGAAGGAGGGC
AAGCGC
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