mRNA_H-elongata_contig140291.2799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140291.2799.1
Unique NamemRNA_H-elongata_contig140291.2799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140291.2799.1 vs. uniprot
Match: D7FHB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB3_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.140e-83
Identity = 121/209 (57.89%), Postives = 147/209 (70.33%), Query Frame = 1 
Query:    1 ETAVWWVYLVYLSTLAPWGIMEVHDAIDATRKPVHDVRNRLLVSTLLILGSTAFAVWYVVWAARTGEVTESATMLMGVGLNSWHWIRVLRGWYSFSLLMDVRPAWEKFFTEMTRVGQIGNRTRKFNFRDQESVAES--PPGMVKASTSGFMPAGWYLTLDEMEVNDSVIDNDSRGGDRALFGSNYRFIRGVILWRMVWVQGVEWPSPTP 621
            E   WWVYLVYL+TLAPWGIM+VHD ID  R+ ++DVRNRLL+ + L LGS      YV WAA+ G  TESATML+GV LN+WHW+RV RGWYS+ LL  +R  WEKFF  MT VG+      +    +  +V E+  P   V+         GW+ +L+EMEVNDSVIDNDS+GGDRALFG NY  +RGVILWRMVW+QGVE PSP+P
Sbjct:    9 ENGEWWVYLVYLTTLAPWGIMQVHDPIDEARRSIYDVRNRLLMGSFLTLGSAIVGFTYVGWAAKVGNNTESATMLVGVALNTWHWVRVSRGWYSYVLLTSMRDVWEKFFDNMTAVGRFEIVVGRVPRMEDVAVIENGGPSTPVEGGAPAIEHRGWHPSLEEMEVNDSVIDNDSQGGDRALFGGNYTLVRGVILWRMVWLQGVERPSPSP 217
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BLAST of mRNA_H-elongata_contig140291.2799.1 vs. uniprot
Match: A0A6H5JJT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.060e-38
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 WWVYLVYLSTLAPWGIMEVHDAIDATRKPVHDVRNRLLVSTLLILGSTAFAVWYVVWAARTGEVTESATMLMGVGLNSWHWIRVLRGWYS 282
            WWVY VYLSTL PWGIM+VHDAID  R+ + DVRNRL++ T L L S     WYV WAA  GE TESATML+GV LN WHW+RV RGWYS
Sbjct:   13 WWVYFVYLSTLTPWGIMQVHDAIDQERRAIRDVRNRLMLGTGLTLASAIVGFWYVAWAASVGEATESATMLVGVVLNFWHWVRVTRGWYS 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140291.2799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHB3_ECTSI1.140e-8357.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJT9_9PHAE2.060e-3867.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140291contigH-elongata_contig140291:153..863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004090.1
Exons2
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.701917-CDS-H-elongata_contig140291:152..3201622929833.701917-CDS-H-elongata_contig140291:152..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140291 153..320 -
1691679176.3245294-CDS-H-elongata_contig140291:152..3201691679176.3245294-CDS-H-elongata_contig140291:152..320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140291 153..320 -
1622929833.73478-CDS-H-elongata_contig140291:410..8631622929833.73478-CDS-H-elongata_contig140291:410..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140291 411..863 -
1691679176.3338642-CDS-H-elongata_contig140291:410..8631691679176.3338642-CDS-H-elongata_contig140291:410..863Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140291 411..863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140291.2799.1prot_H-elongata_contig140291.2799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140291 153..863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140291.2799.1

>prot_H-elongata_contig140291.2799.1 ID=prot_H-elongata_contig140291.2799.1|Name=mRNA_H-elongata_contig140291.2799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
ETAVWWVYLVYLSTLAPWGIMEVHDAIDATRKPVHDVRNRLLVSTLLILG
STAFAVWYVVWAARTGEVTESATMLMGVGLNSWHWIRVLRGWYSFSLLMD
VRPAWEKFFTEMTRVGQIGNRTRKFNFRDQESVAESPPGMVKASTSGFMP
AGWYLTLDEMEVNDSVIDNDSRGGDRALFGSNYRFIRGVILWRMVWVQGV
EWPSPTP
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mRNA from alignment at H-elongata_contig140291:153..863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140291.2799.1 ID=mRNA_H-elongata_contig140291.2799.1|Name=mRNA_H-elongata_contig140291.2799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=711bp|location=Sequence derived from alignment at H-elongata_contig140291:153..863- (Himanthalia elongata Himel1 dioecious)
GAAACCGCAGTATGGTGGGTCTATCTCGTGTACCTCAGCACGCTTGCGCC
GTGGGGCATTATGGAGGTTCACGACGCGATCGATGCGACCCGCAAGCCCG
TGCACGATGTAAGGAACCGCCTTCTTGTTTCAACCTTGTTGATCCTGGGC
TCGACAGCTTTCGCTGTGTGGTACGTTGTTTGGGCCGCAAGAACGGGAGA
GGTGACGGAATCCGCGACCATGCTAATGGGTGTAGGCTTGAATTCCTGGC
ATTGGATCAGGGTCTTGCGTGGATGGTATTCCTTCTCTTTACTGATGGAT
GTACGCCCCGCGTGGGAAAAGTTTTTTACCGAGATGACCAGAGTAGGTCA
GATTGGGAATCGCACGCGCAAATTCAACTTCCGCGATCAGGAGAGTGTTG
CGGAATCACCCCCGGGAATGGTCAAAGCCTCGACTTCTGGCTTTATGCCA
GCCGTCGTAGAGTCACCATTTCCACATCGTCATCGTATGACCCTATCGAA
CGGTTTCGATACCCAAGCACGCCGTAATTCCGCCATCTCGGAGGGTTGGT
ACCTGACGCTGGACGAGATGGAGGTAAACGACAGCGTCATCGACAACGAC
AGCAGGGGAGGCGATAGAGCGCTCTTCGGATCCAACTATAGGTTTATTCG
TGGCGTCATTCTGTGGCGTATGGTGTGGGTTCAAGGCGTGGAGTGGCCAT
CGCCAACCCCA
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Coding sequence (CDS) from alignment at H-elongata_contig140291:153..863-

>mRNA_H-elongata_contig140291.2799.1 ID=mRNA_H-elongata_contig140291.2799.1|Name=mRNA_H-elongata_contig140291.2799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig140291:153..863- (Himanthalia elongata Himel1 dioecious)
GAAACCGCAGTATGGTGGGTCTATCTCGTGTACCTCAGCACGCTTGCGCC
GTGGGGCATTATGGAGGTTCACGACGCGATCGATGCGACCCGCAAGCCCG
TGCACGATGTAAGGAACCGCCTTCTTGTTTCAACCTTGTTGATCCTGGGC
TCGACAGCTTTCGCTGTGTGGTACGTTGTTTGGGCCGCAAGAACGGGAGA
GGTGACGGAATCCGCGACCATGCTAATGGGTGTAGGCTTGAATTCCTGGC
ATTGGATCAGGGTCTTGCGTGGATGGTATTCCTTCTCTTTACTGATGGAT
GTACGCCCCGCGTGGGAAAAGTTTTTTACCGAGATGACCAGAGTAGGTCA
GATTGGGAATCGCACGCGCAAATTCAACTTCCGCGATCAGGAGAGTGTTG
CGGAATCACCCCCGGGAATGGTCAAAGCCTCGACTTCTGGCTTTATGCCA
GCCGAAACCGCAGTATGGTGGGTCTATCTCGTGTACCTCAGCACGCTTGC
GCCGTGGGGCATTATGGAGGTTCACGACGCGATCGATGCGACCCGCAAGC
CCGTGCACGATGTAAGGAACCGCCTTCTTGTTTCAACCTTGTTGATCCTG
GGCTCGACAGCTTTCGCTGTGTGGTACGTTGTTTGGGCCGCAAGAACGGG
AGAGGTGACGGAATCCGCGACCATGCTAATGGGTGTAGGCTTGAATTCCT
GGCATTGGATCAGGGTCTTGCGTGGATGGTATTCCTTCTCTTTACTGATG
GATGTACGCCCCGCGTGGGAAAAGTTTTTTACCGAGATGACCAGAGTAGG
TCAGATTGGGAATCGCACGCGCAAATTCAACTTCCGCGATCAGGAGAGTG
TTGCGGAATCACCCCCGGGAATGGTCAAAGCCTCGACTTCTGGCTTTATG
CCAGCCGGTTGGTACCTGACGCTGGACGAGATGGAGGTAAACGACAGCGT
CATCGACAACGACAGCAGGGGAGGCGATAGAGCGCTCTTCGGATCCAACT
ATAGGTTTATTCGTGGCGTCATTCTGTGGCGTATGGTGTGGGTTCAAGGC
GTGGAGTGGCCATCGCCAACCCCAGGTTGGTACCTGACGCTGGACGAGAT
GGAGGTAAACGACAGCGTCATCGACAACGACAGCAGGGGAGGCGATAGAG
CGCTCTTCGGATCCAACTATAGGTTTATTCGTGGCGTCATTCTGTGGCGT
ATGGTGTGGGTTCAAGGCGTGGAGTGGCCATCGCCAACCCCA
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