mRNA_H-elongata_contig14000.2788.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14000.2788.1
Unique NamemRNA_H-elongata_contig14000.2788.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 2.420e-96
Identity = 164/285 (57.54%), Postives = 205/285 (71.93%), Query Frame = 3 
Query:   21 GSAAPVVPNWCTNGMSGYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTM---PPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPG-SAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCIIADYVPTPSPV-----TAAPVVPSNCSNGMPGYQDGFICCKEA 848
            G++ PV P+ C+NG+ G  D DVCCL  CGQCGG GCG+IAGT G+  CC  TI+E       + G      PC++A +TPSP+NPAF GT +P APSTCSNGIAG Q+GA CC E CG+CGG GCG++PGTGGS NCC ST+L   ++CG   EAPC+I+GYTPAPA V G + APY +S CSNG+ GYQD   CCA +CGQCGG GCGS+PGT G+S CCS+ +   G  C+ +  +PC+I +Y  TP+PV     +AAPVVPSNCSNG+PGYQ+  ICC E+
Sbjct:  282 GASDPVAPSTCSNGIPGVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEE------SGGVFCGEAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCG---EAPCIIEGYTPAPAVVGGGTTAPYGTSTCSNGILGYQDGPACCAANCGQCGGGGCGSVPGTAGASACCSSDVELAGNLCSATGVSPCVIDNY--TPAPVVPDYGSAAPVVPSNCSNGLPGYQNNDICCLES 555
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.340e-41
Identity = 76/142 (53.52%), Postives = 96/142 (67.61%), Query Frame = 3 
Query:   42 PNWCTNGMSGYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTM---PPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNII 458
            P+ C+NG+ G  D +VCCL  CGQCGG GCG+IAGT G+  CC  TI+E       + G      PC++  +TPSP+NPA  GT +P APSTCSNGI G Q+G  CC E CG+CGG GCG++PGTGGS NCC S +L   ++
Sbjct:    3 PSTCSNGIPGVSDGEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEE------SGGVFCGEAPCVMEGFTPSPLNPALDGTAAPVAPSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDILAAGVV 138
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.020e-39
Identity = 116/334 (34.73%), Postives = 145/334 (43.41%), Query Frame = 3 
Query:   51 CTNGMSGYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVI---DGYTPAPAGVPGSAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCIIADYVP---------------TPSPVTAAPVVPSNCSNGMPGYQDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSGVYCVDVTDAPCILDETESPT 998
            C  G+ G Q  DVCC   CG CGG GC    G  GS ACC   +R SG+ C        PC+                        C  GI G+Q    CC+ +C  CGG GC    G  G   CC   V  +   C    EAPC++   +  TPAP   P  AA      C  G+ G Q ++VCCA SCG CGG GC    G  G   CC   IR+   DC+++  APCI+    P               TP+P  AA      C  G+ G Q   +CC  +CG CGG GC    G  G  +CC  +I  + + C    +APCI+   E  T
Sbjct:  270 CDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDG--GSGACCGGGVRASGRYCSVTGEA--PCMTVP--------------------KCDGGIVGIQASDVCCSLSCESCGGSGCSGRDG--GEDECCGGGVRASGRDCSVTGEAPCIVTSPEPSTPAPTPAPTRAA----GTCDGGIVGVQASDVCCALSCGSCGGDGCSDRDG--GEDNCCGVEIRTANLDCSVTGEAPCIVTSPEPSTXXXXXXXXXXXXXTPAPSRAA----GTCEGGIVGVQASNVCCALSCGSCGGDGCSDRDG--GEDNCCGVEIRTANLDCSVTGEAPCIVTSPEPST 565
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 6.480e-28
Identity = 68/132 (51.52%), Postives = 78/132 (59.09%), Query Frame = 3 
Query:  783 VPSNCSNGMPGYQDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSGVYCVDVTDAPCILDETESPTAAPT--------PQKVGDANDFLNTTANAAVTRTPVPVGMLLPLVASTAALLGAWAFGGA 1154
            VPS CSNG+PGYQDG  CC   CGLCGG GCG V GT G++DCCPS I  S   C     APCI+  T +PT AP         P   G+ANDF+N T  A       P  ++LPL  +TAA LGA AFG A
Sbjct:    3 VPSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFINDTNAADPGMLREPASLVLPLATATAAFLGALAFGAA 134
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.060e-23
Identity = 71/163 (43.56%), Postives = 92/163 (56.44%), Query Frame = 3 
Query:   51 CTNGMSGYQDLD--VCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENC-GQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCV-IDG-YTPAPAGVP 524
            C+NG+ G +D    +CC   CG CGG GCG++ G  G D CCS  I      C   N    PC++         P FV        STC NG+AGVQ+G+ CCAE C G CGG GCGS+ GT G+ +CC++T+L   + C  GV APC+ ++G YT AP   P
Sbjct:  177 CSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLD-CCSEEIAVVNDLCSVTNEA--PCVMDP-------PDFVA-------STCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAP 322
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.190e-19
Identity = 73/192 (38.02%), Postives = 100/192 (52.08%), Query Frame = 3 
Query:  273 FVGTTSPFAPSTCSNGIAGVQNGA--ACCAENCGQCGGVGCGSLPGTGGS---SNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSNCSNGVAGYQD--ANVCCAESCGQ-CGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCIIADYVPTPSPVTAAPVVPSNCSNGMPGYQD 824
             VGT +P A + CSNG+ G+Q+ +  ACC E CG CGGVGC   P    S   ++CCA+ ++E+  +C   + APC+I            +AA    S C NG  G QD   +VCC   CG  CGG GCGSL G   +  CCS  I  +G  C+ + +APC++       S         + CSNG+ G +D
Sbjct:   19 LVGTMTP-AGAVCSNGLEGIQSTSLDACCVEECGLCGGVGC--TPANTSSLTSADCCATEIIESGTLCEVSMAAPCIIT-----------TAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQ-CCSNLIIESGAVCSDTVSAPCVVGAAEADNS---------TTCSNGIVGIED 186
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.740e-18
Identity = 90/321 (28.04%), Postives = 118/321 (36.76%), Query Frame = 3 
Query:   51 CTNGMSGYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSNCS------------NGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCII-------------------------------------ADYVPTPSPVTAAPVVPSNCSNGMPGYQDGFICCKEACGLCGG 866
            C+NG+SG +   VCC ++CG CGG GCGS  G    D CC++TI+E    C        PC+I E T               A  TCSNG+A    G  CC+  CG CGG GC    G  G   CC S +   N  C +   APCV+ G +                                   G      CC   CG CGG GCG + G G    CC++    +   C+++  +PC++                                       Y  T +  T+   V    +    G   G  CC   CG CGG
Sbjct:   24 CSNGLSGLEKGGVCCPVECGTCGGTGCGSRPGLTKYD-CCTSTIKEDNHLCSVTKEA--PCVIDEETE--------------ADPTCSNGVA---KGDICCSAGCGYCGGTGCAGRGGLSGDE-CCTSKIAAANKSCDD-QSAPCVMSGNSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCGGVAKGAYCCNAGCGTCGGTGCG-MRGDG----CCTSDAALS--LCSVTGMSPCLMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTTTTTDTTSGTSVADATATSCDGVSKGAYCCNAGCGTCGG 315
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BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A7R9YY20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY20_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 9.830e-15
Identity = 58/147 (39.46%), Postives = 75/147 (51.02%), Query Frame = 3 
Query:  303 STCSNGIAGVQNGAA--CCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCII 737
            S C NGI GV +     CCA +CGQCGG GC   PG  GS+NCC   +  ++I+C    +  C++    PA            +  C  GV      ++CCA SCG CGG GCGS PG  G S CC + + S+G  C+      CII
Sbjct:  251 SFCYNGIEGVSSSGVEVCCASSCGQCGGSGCWQFPG--GSANCCTGAIASSDIVCSEFTDVGCIM----PA------------TQWCEYGVI---SGDICCAGSCGTCGGTGCGSRPG--GWSSCCGSGVTSSGNVCSDYSDIACII 374
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.530e-14
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 3 
Query:  294 FAPSTCSNGIAGVQNGAACCAENC-GQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCV-IDG-YTPAPAGVP 524
            F  STC NGIAGVQ+G+ CCAE C G CGG GCGS+ GT G+ +CC+ST+L   + C  GV APC+ ++G YT AP   P
Sbjct:    6 FVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAP 85
[Close]
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A0G4GG59_VITBC (GH10 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GG59_VITBC)

HSP 1 Score: 73.2 bits (178), Expect = 1.980e-9
Identity = 93/328 (28.35%), Postives = 135/328 (41.16%), Query Frame = 3 
Query:   51 CTNGMSGYQD--LDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPST---CSNGIAGVQNGA-ACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNII-CGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSN--CSNGVAGY--QDANVCCAESCGQCGGVGCGSLPGTGGSSF--CCSTSIRSNGTDCAISQAAPCIIADYVPTPSPVTAAPVVPSNCSNGMPGY--QDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSG--VYCVDVTDAPCILDE 983
            CT  + G  D    VCC   C  C    C +         CC   +R  G  C  +N +  PC + E            +   FA S    C + + G+ +G  ACC  +CGQCGG+ CGSLPG  G++ CC++ +  +N   C    E PC++   T     V    AP       C   + G   +D  VCC    G  G + C +   T   +    CS+    NGT      A PC++ +  P  S +         C + + G   +   +CC   C  CGG GC   A +     CC  +I  +G  +YC  +  APC +D+
Sbjct:  464 CTR-LGGIADDRATVCCSAKCASCDRQTCET------DSECCPDMLRAHGTDC--SNASAVPCRMDE-----------ASKDAFAESAWEICQHKLGGLSDGEDACCPSDCGQCGGMDCGSLPG--GTAVCCSTGIHASNASSCDIDHEPPCLVTAATFF--SVKADVAPVYEREVLCRRHLDGSYDRDTGVCCKR--GALGSIDCSTNETTTAMAAMAACSSGSNGNGT-----PALPCVLTER-PDMS-IKDRWTKRRVCEDYIGGVFNEAREVCCPIECEECGGEGCSLRADSR-PDKCCSKEIRAAGSDLYCSKLEVAPCAVDD 757
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FZM1_ECTSI2.420e-9657.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA0_9PHAE3.340e-4153.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U7_ECTSI2.020e-3934.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZM0_ECTSI6.480e-2851.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7R2_9PHAE3.060e-2343.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LML5_ECTSI7.190e-1938.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNF5_9PHAE9.740e-1828.04MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7R9YY20_9STRA9.830e-1539.46Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
D8LML4_ECTSI6.530e-1456.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4GG59_VITBC1.980e-928.35GH10 domain-containing protein n=2 Tax=Vitrella br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14000contigH-elongata_contig14000:1516..7353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue4.5e-51
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
Ec32 orthologEc-25_003630.1
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_003620.1
Exons7
Model size2534
Cds size1131
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.6866894-UTR-H-elongata_contig14000:1515..15541622929832.6866894-UTR-H-elongata_contig14000:1515..1554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14000 1516..1554 +
1691679175.927711-UTR-H-elongata_contig14000:1515..15541691679175.927711-UTR-H-elongata_contig14000:1515..1554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14000 1516..1554 +
1622929832.7049406-UTR-H-elongata_contig14000:2157..21801622929832.7049406-UTR-H-elongata_contig14000:2157..2180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14000 2158..2180 +
1691679175.9410956-UTR-H-elongata_contig14000:2157..21801691679175.9410956-UTR-H-elongata_contig14000:2157..2180Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14000 2158..2180 +
1622929832.8382208-UTR-H-elongata_contig14000:6012..73531622929832.8382208-UTR-H-elongata_contig14000:6012..7353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14000 6013..7353 +
1691679176.0141027-UTR-H-elongata_contig14000:6012..73531691679176.0141027-UTR-H-elongata_contig14000:6012..7353Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14000 6013..7353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.7209613-CDS-H-elongata_contig14000:2180..23151622929832.7209613-CDS-H-elongata_contig14000:2180..2315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 2181..2315 +
1691679175.957504-CDS-H-elongata_contig14000:2180..23151691679175.957504-CDS-H-elongata_contig14000:2180..2315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 2181..2315 +
1622929832.7343316-CDS-H-elongata_contig14000:2905..30051622929832.7343316-CDS-H-elongata_contig14000:2905..3005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 2906..3005 +
1691679175.9674635-CDS-H-elongata_contig14000:2905..30051691679175.9674635-CDS-H-elongata_contig14000:2905..3005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 2906..3005 +
1622929832.7563853-CDS-H-elongata_contig14000:3804..40501622929832.7563853-CDS-H-elongata_contig14000:3804..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 3805..4050 +
1691679175.9767437-CDS-H-elongata_contig14000:3804..40501691679175.9767437-CDS-H-elongata_contig14000:3804..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 3805..4050 +
1622929832.7741246-CDS-H-elongata_contig14000:4334..45741622929832.7741246-CDS-H-elongata_contig14000:4334..4574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 4335..4574 +
1691679175.9849458-CDS-H-elongata_contig14000:4334..45741691679175.9849458-CDS-H-elongata_contig14000:4334..4574Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 4335..4574 +
1622929832.7913113-CDS-H-elongata_contig14000:5067..52651622929832.7913113-CDS-H-elongata_contig14000:5067..5265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 5068..5265 +
1691679175.9948149-CDS-H-elongata_contig14000:5067..52651691679175.9948149-CDS-H-elongata_contig14000:5067..5265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 5068..5265 +
1622929832.8133118-CDS-H-elongata_contig14000:5800..60121622929832.8133118-CDS-H-elongata_contig14000:5800..6012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 5801..6012 +
1691679176.0045836-CDS-H-elongata_contig14000:5800..60121691679176.0045836-CDS-H-elongata_contig14000:5800..6012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14000 5801..6012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14000.2788.1prot_H-elongata_contig14000.2788.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14000 2181..6012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14000.2788.1

>prot_H-elongata_contig14000.2788.1 ID=prot_H-elongata_contig14000.2788.1|Name=mRNA_H-elongata_contig14000.2788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
MSGYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWN
NGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAEN
CGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAP
AGVPGSAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGS
SFCCSTSIRSNGTDCAISQAAPCIIADYVPTPSPVTAAPVVPSNCSNGMP
GYQDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSGVYCVDVTD
APCILDETESPTAAPTPQKVGDANDFLNTTANAAVTRTPVPVGMLLPLVA
STAALLGAWAFGGALFSLSGFGTVRF*
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mRNA from alignment at H-elongata_contig14000:1516..7353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14000.2788.1 ID=mRNA_H-elongata_contig14000.2788.1|Name=mRNA_H-elongata_contig14000.2788.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5838bp|location=Sequence derived from alignment at H-elongata_contig14000:1516..7353+ (Himanthalia elongata Himel1 dioecious)
CCGCCGACACCTCCGACTACGGATCGGCTGCCCCCGTCGGTAAGTGCTCT
TGCTTCACCACCTTACTGCCTCTCTTTGGTGCTATTGCCGACACCATCCC
CCCTCCTACCCTTTATGTAACCTTTATTATCAACCGTGGTGTTTAGGATT
TGGAGCCATCTCGTTGTTGTTGGGCTAATTATTGCGCAAAATCGATTCTG
GGTGGGAAGTACTTACGTTTAGGGGAGCAAAGCCACCGCGAGGCTGATAA
GCACACGGATCTTCGTGGCTTGGGACGGGACGGTACGGTACACGATTAGA
GACATGACATATTGGTGTACTGTAGTGGTTTGGAATCGCCGGTGCGGTAC
AGTGAGGGACGGACGGGACGGGATGGTAGTAAATAAAACAGAATGGATTG
GTTTCGCGGTTCCTGTCCCGATCAATTTTTGAAGTGACGTCACACGGTAA
CGTGTACCGGTATCCCACGTATCCCACAATCTATATATTGTTTCATGTCT
TGTGTCTTGTCAAATAAAACGTAGAAAGGACAGCGCGGCAAAGGCCCGGG
CTAGAATCGCTCCCTGCGTATAAAACGTTTTCCGTCCGAACACTCACTCT
CTCTCTCTCGTGGCCCTCTTTGACCTTTTGGAATGCGGGCAGTGCCCAAC
TGGTGCACCAACGGCATGTCCGGATATCAGGACCTGGACGTGTGCTGCTT
GTTGGATTGCGGACAGTGCGGCGGGGCCGGCTGCGGTTCGATCGCTGGGA
CTCCTGGTAGTGATGCTTGTTGCTCCACGACCATCCGTGAAAGCGGTCAG
GTTAGAGTCTTCGGGGGTCTCTCTCGGAAAAATTGGAATGATATGAATGT
GCCCATTTGACCTCTAGGGAACTCAATCTGTTTTTTATTTTTACATTCTA
AATGTATAATAAAACTTGAAATCCAATTCCATAGGGATTAATATTAATAG
TGGGAATGGGATTTGTTCGTTCTCCACGGTGAACAAAAAGTCGCTCCTGG
ACAGGAGGGGGGAGCATAATCATACTGTAATTTAAAGTAATATTATTAGT
TCGAAGGGGTTTTCACACTCGTCGAACAATAGGGGCTGGAGGGGGTGCTA
CCCAAAGCGTCCCCGATTCGAGGCGTTCGCTTGTTTAATTCCTACCCATC
CCCTCTCATTTATCCCATCGGAAGATTGGATCCCTTGTTCCTGGTTGGCG
GGTTTTTATTTTTCCATCCCCGAATCGGGGATACTTAAGCAACCCCCCCC
CCCCACTCTTATCGAGGGATTGGGGAGGGGGGTGCTGTCTGTTTATTTTG
GTTTTGCCTTTCCCTAGACCCTCGGTGGTGCCCCAAACGTTTTTTCCGTT
ACTCGTTTATTGTCGTGATTATGCCGTCGGTTATTTATAGACCTGCGATT
GGAACAACGGGACCATGCCTCCATGCATTATCGCGGAATGGACGCCGTCG
CCGGTCAACCCTGCCTTCGTGGGTACAACATCTCCTTTCGGTGGGTCCAG
ACTTTCCGAGATTGTTACAGGAATGTATTGCCGTGTGAAGGGGATTTGAT
AACTGGATCCGGGATGGTGCTTCGCTGGAATCCCGAAAAAAAATGGTCGA
TGGTCTCCAGGCCGAATATACTGCTGCATGCGTATTTTCACGTGGCGGGA
GGAGATCGGATTATATGAGATCCTGCCGCGACCAAGCAAGCACCACGAAT
TTTTTACTTTTTTTTTGTGTAGAATGCTCACATTTTGAAGTAGTTCTATA
GAGATCAACGAGGGATAGCAATATCTTTGTTGATCGTAGTGTAACCAAGC
GAAACTAGATCTGTTTTTTTACATACTAAATTCAATATAAAAGTTTAAAT
CCAGTTCCGTAAGGGTTAATAGTAGTGTAACCAAGCGAAACTCGATCTGT
TTTTTTACACACTAAATTCAATATAAAACTTGAAATCCAGTTCTATAAGG
GTTAATAGTGGTAACCAAGCGAAACTGTTATTAACAGTGTAATAGTGTAC
CGTACCTTACCAGAGTTGGTTATTTTGTTAGAATGGGAGAACAGGAGTAG
CTAATCAAAGTTCGATCATTAGTTGTGATGAAGTGTAGGGAGGCGTGAAT
CAACCGGGGAAATGTATCGTATACTGAAGATAAGGTTTGATTGATGGCCA
ACCTTGCAATAGGTGGGATTAGCATTTCGAATTGTACTGTATTATATAGA
CAATCGGCAGAAATTAATATCATGTAAGTCCTCGCCCCTGTGGCCCCAAC
CGTCCCATGTCCCCGTCCCCTTTTTTCTCTATCCTCCAGCGCCATCCACG
TGCAGCAACGGTATCGCCGGGGTGCAGAACGGAGCCGCATGCTGCGCTGA
AAACTGTGGCCAGTGCGGAGGCGTCGGATGCGGGTCTCTGCCAGGCACCG
GCGGCTCTTCCAACTGTTGTGCTTCGACCGTCCTCGAGAACAACATAATC
TGCGGAAATGGCGTCGAGGCTCCCTGCGTCATCGACGGCTACACCCCAGC
CCCTGCCGGGGTGCCTGGCTCGGCCGCTCCCTACGGTAAACGTCTGGCCT
GGTCTGACTTGTCTGAAGAGAGGGTAGGGATTATGGCTCAGTTATGGTAT
GTTTTGTAGCGAATGATAATGCATATGTTTGAGCGGGAGAAGCGACCCTT
CGTCTCGGTCTTGACGTTTTTGGTCTTATCGCGGTCAAGGTTTGGTAGAG
GTAGAGGTAGCATTTGCTGCGAATTGAAAAATAGGGGCACTCAATGTCTT
ACATAAGTAATATAATGTGTCTCCCTTCTCTGAATGTGTCTCCCTTATCT
CTGTATATATTGAAACCAGTCTCGTCAAACTGCAGCAATGGGGTAGCCGG
CTACCAGGATGCGAATGTGTGCTGCGCCGAGAGTTGCGGACAGTGCGGTG
GCGTTGGCTGCGGTTCTTTGCCCGGCACCGGGGGTTCTTCCTTCTGCTGC
TCGACCAGCATCCGATCGAACGGGACGGACTGCGCCATCTCCCAAGCGGC
GCCCTGTATCATCGCCGACTATGTTCCTACTCCGTCGCCGGTCACCGCAG
CCCCCGTTGGTGAGGAGATAGGGTATGTTGTATGTTGTTACATAGCACCT
GGGAGGCGTTTTTTTGTGGACGGGGTAGTAATTGAGTGCGCAATGTATAG
ATGTAAATAACGTTTGTGTTTCGTTATCGAAGGGTTTAACCAGGGCATCC
AATTCACAGCTCCGGTCAAATATGCAATTATGCTAGAAACTTGTGTGGTG
TACGAATCCGTCCGAAAGCCGCTTGCACTTGTACTGTCTGTCCCCTCACG
GTACAGTAGGCTGCTGAGTCGAGTGGACTGGTTTCCAAACCCGCTTGCGA
GAGAAATACTCAGTTGTATATTATTGAGGGAGAGAGATCAAAATCGCGGA
AATTTGAAGAATTATAAATATTAAAGCGTTACTATAGAAAGCAGAATGTT
TTTAATTCCGGTTTATTCCGTTACTGTATTTCAATAATTTGTCATATCCC
AATACCTTCATTATTTTCCCGCTCGTTACTGGCCTCCGTGATGCAACTCC
AGTCCCGTCGAATTGCAGCAACGGGATGCCGGGGTACCAGGATGGTTTCA
TATGTTGTAAGGAAGCATGCGGTCTTTGTGGGGGAGTCGGGTGTGGAAGA
GTGGCCGGAACAAACGGGTCCACCGACTGCTGCCCTAGCGACATCGAAAA
GAGCGGCGTTTACTGCGTCGATGTAACCGATGCCCCCTGTATTCTCGACG
GTGAGGCAGCGGCGTTCTCGAGTGATGTACCTTCTTCGTGTCTCCTGTCG
GGCACGTCTATTAATAGTGGACCGCTTTGGTTTATCGCCCTGTAAAACAT
GTCGTTGTGCTTTGGCTAAAAATTGTACTGTTGTATACAATACCACTATT
TTGTAGTACATTTTGTACCATTCTTTACACTTCTACTAAACTATTTTGTA
GTACATATTGTACCAGATAGCATAATGTACCGCACACGTGGTAATTACTC
TCTTATGAAAATATGTTATCGTTGAGAAGAAAAAGAGAGAAAAAAGCCAA
GGCAAACCCACGTTTTTTTCGATAAAAAGGTCGCACAAGGAATTATTGTT
GAAAATATATATATATGTATTCTGGTAGATGTGTGTGGTGTACCTGCCAG
GCTTACGGCTGGAGAAACCCACTCACGCGTAGCATCGGTTACGAACAGTA
CCTAGCTCTCTTTTTTTATTTTGGAACCCATCATAGGCTTGCCGTTACAT
CCCCATCCCTCCGTCAACCGCCTCCATCTCTACAGAAACCGAAAGCCCCA
CAGCGGCGCCCACCCCCCAGAAGGTCGGTGATGCCAACGATTTCCTCAAC
ACCACCGCGAATGCAGCGGTCACCAGGACACCTGTGCCAGTGGGGATGCT
TTTGCCGTTGGTGGCCTCGACGGCGGCCCTGTTGGGCGCCTGGGCGTTCG
GGGGAGCGCTGTTTTCCCTCTCAGGGTTTGGCACCGTAAGGTTCTAGGTT
GCAGTTGGTGGAACGGGATACGATGTGATGAGACGAAGGGGGGCGGGCAG
AAGGAGATCTGAGCAGCTTAAGGTGCTGAAGTACACGCATGCTTCATATA
TTTGGTAGGTGAGAATTCGAAATACACCATTCTGGTGGAATTTATAGTAT
TTGGAGGCTTTTACGGAAGAGGGGAAAAGAGCGAGAGGGCTTTGGCTTTC
GGCTTGTTTTAATTTTGATTTTTACGTGGGTCTGGTGTGTAGTGGTGATG
ATGCAGCTCTCTATACGCGCGCCTATGACCCCGTGTTGTAACATCAAAAT
TAAGTCCGATGAGCACTGCAGGCTGGAGGGGGACACGAGCGGAATTTGTT
TTCCTTGCTTTGTAGTAATTCGTGTCTTGGGCTGTTTCGCTTCCTGTCTC
GAGGGGATGAAAGAAAACAGTCAAATTGATTACTTTGCCTTAAGCTTCTT
TGGAAGCTCTCTCCGTTAGAAAGAAGGTTTCACTTGATTGGAAGGCTTTC
GCTTGCTTTGAAGTCTGCCAAAGGTACCACGGTGTTGTAGTGGTCTGTCT
AGTGTGCAGTTCTCCCGGCCCGTTAGGGTACATGCCCTACCCCCGCCAGA
CTGAGCTCGGCTTGGGTGGAAGACACACTTTCAGGGTAAATCTGGCTTGT
GGTGGATGGTGTTTTTTTTGCCTGTTTACGGAGCGAATTGAACATTTTCA
TAATTTTCGAAAAATAGTAAAATATTGGTTTGAAATCGCCAAATCATATT
TGGGCACGTTGTTGCTTTTGAGGATGGCGGTCTCGGTGATGTATTTGATT
CAATTTTCCGTGAGCATAACAAAGGCGCGTGGGCCTCAGGTGCTGGGTTC
GATTGCACTCGAGCCAGGAAGCTTGGATCGTAAGGCTACTCTGACGTGGG
GTTCATTCAGTATATTCCATCCATCAATGAATAATTGTTGCTCTCAATGA
ATAATTGTTGTTCAGAATGATGTTGCTTAATGTGTCTTGTGACTAGGAAG
TCTTCCCTGCAGAACAAAAGTTTTTAAATGCTCAAAAGAATACAGGAAAT
ATGAAAGATTTGAATGCTGCTTCTTATTTCCAATTTGGAGTGCTAGACCT
TGGAAGGCGACGGGGGGGGGAGAGACGGGGGGAGCATACAAGTATTGCAT
GTCTTTAGACCATTGACCGCACGTCCTTGGGAGGACGGGACTAGGGGCTG
GTGGGCGTATATGCCCTGACTGATTGGTTTCTCTTTTTGTCCCGATGTAC
CTAATATTTACGATGTATATTTTTGTATTCCTCAGTCATGACATGTACCA
GCGCGCTACTTAGCGATGGTTTTCAATTATATCCACTG
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Coding sequence (CDS) from alignment at H-elongata_contig14000:1516..7353+

>mRNA_H-elongata_contig14000.2788.1 ID=mRNA_H-elongata_contig14000.2788.1|Name=mRNA_H-elongata_contig14000.2788.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2262bp|location=Sequence derived from alignment at H-elongata_contig14000:1516..7353+ (Himanthalia elongata Himel1 dioecious)
ATGTCCGGATATCAGGACCTGGACGTGTGCTGCTTGTTGGATTGCGGACA
GTGCGGCGGGGCCGGCTGCGGTTCGATCGCTGGGACTCCTGGTAGTGATG
CTTGTTGCTCCACGACCATCCGTGAAAGCGGTCAGATGTCCGGATATCAG
GACCTGGACGTGTGCTGCTTGTTGGATTGCGGACAGTGCGGCGGGGCCGG
CTGCGGTTCGATCGCTGGGACTCCTGGTAGTGATGCTTGTTGCTCCACGA
CCATCCGTGAAAGCGGTCAGACCTGCGATTGGAACAACGGGACCATGCCT
CCATGCATTATCGCGGAATGGACGCCGTCGCCGGTCAACCCTGCCTTCGT
GGGTACAACATCTCCTTTCGACCTGCGATTGGAACAACGGGACCATGCCT
CCATGCATTATCGCGGAATGGACGCCGTCGCCGGTCAACCCTGCCTTCGT
GGGTACAACATCTCCTTTCGCGCCATCCACGTGCAGCAACGGTATCGCCG
GGGTGCAGAACGGAGCCGCATGCTGCGCTGAAAACTGTGGCCAGTGCGGA
GGCGTCGGATGCGGGTCTCTGCCAGGCACCGGCGGCTCTTCCAACTGTTG
TGCTTCGACCGTCCTCGAGAACAACATAATCTGCGGAAATGGCGTCGAGG
CTCCCTGCGTCATCGACGGCTACACCCCAGCCCCTGCCGGGGTGCCTGGC
TCGGCCGCTCCCTACGCGCCATCCACGTGCAGCAACGGTATCGCCGGGGT
GCAGAACGGAGCCGCATGCTGCGCTGAAAACTGTGGCCAGTGCGGAGGCG
TCGGATGCGGGTCTCTGCCAGGCACCGGCGGCTCTTCCAACTGTTGTGCT
TCGACCGTCCTCGAGAACAACATAATCTGCGGAAATGGCGTCGAGGCTCC
CTGCGTCATCGACGGCTACACCCCAGCCCCTGCCGGGGTGCCTGGCTCGG
CCGCTCCCTACGTCTCGTCAAACTGCAGCAATGGGGTAGCCGGCTACCAG
GATGCGAATGTGTGCTGCGCCGAGAGTTGCGGACAGTGCGGTGGCGTTGG
CTGCGGTTCTTTGCCCGGCACCGGGGGTTCTTCCTTCTGCTGCTCGACCA
GCATCCGATCGAACGGGACGGACTGCGCCATCTCCCAAGCGGCGCCCTGT
ATCATCGCCGACTATGTTCCTACTCCGTCGCCGGTCACCGCAGCCCCCGT
TGTCTCGTCAAACTGCAGCAATGGGGTAGCCGGCTACCAGGATGCGAATG
TGTGCTGCGCCGAGAGTTGCGGACAGTGCGGTGGCGTTGGCTGCGGTTCT
TTGCCCGGCACCGGGGGTTCTTCCTTCTGCTGCTCGACCAGCATCCGATC
GAACGGGACGGACTGCGCCATCTCCCAAGCGGCGCCCTGTATCATCGCCG
ACTATGTTCCTACTCCGTCGCCGGTCACCGCAGCCCCCGTTGTCCCGTCG
AATTGCAGCAACGGGATGCCGGGGTACCAGGATGGTTTCATATGTTGTAA
GGAAGCATGCGGTCTTTGTGGGGGAGTCGGGTGTGGAAGAGTGGCCGGAA
CAAACGGGTCCACCGACTGCTGCCCTAGCGACATCGAAAAGAGCGGCGTT
TACTGCGTCGATGTAACCGATGCCCCCTGTATTCTCGACGTCCCGTCGAA
TTGCAGCAACGGGATGCCGGGGTACCAGGATGGTTTCATATGTTGTAAGG
AAGCATGCGGTCTTTGTGGGGGAGTCGGGTGTGGAAGAGTGGCCGGAACA
AACGGGTCCACCGACTGCTGCCCTAGCGACATCGAAAAGAGCGGCGTTTA
CTGCGTCGATGTAACCGATGCCCCCTGTATTCTCGACGAAACCGAAAGCC
CCACAGCGGCGCCCACCCCCCAGAAGGTCGGTGATGCCAACGATTTCCTC
AACACCACCGCGAATGCAGCGGTCACCAGGACACCTGTGCCAGTGGGGAT
GCTTTTGCCGTTGGTGGCCTCGACGGCGGCCCTGTTGGGCGCCTGGGCGT
TCGGGGGAGCGCTGTTTTCCCTCTCAGGGTTTGGCACCGTAAGGTTCTAG
AAACCGAAAGCCCCACAGCGGCGCCCACCCCCCAGAAGGTCGGTGATGCC
AACGATTTCCTCAACACCACCGCGAATGCAGCGGTCACCAGGACACCTGT
GCCAGTGGGGATGCTTTTGCCGTTGGTGGCCTCGACGGCGGCCCTGTTGG
GCGCCTGGGCGTTCGGGGGAGCGCTGTTTTCCCTCTCAGGGTTTGGCACC
GTAAGGTTCTAG
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