mRNA_H-elongata_contig139973.2785.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: A0A6H5KQQ6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ6_9PHAE) HSP 1 Score: 234 bits (596), Expect = 8.370e-75 Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 1
Query: 10 VVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTH 456
+VS++NSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTH
Sbjct: 1 MVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTH 149
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI) HSP 1 Score: 243 bits (619), Expect = 1.530e-71 Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 1
Query: 1 HEDVVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGDCL 468
H+D+VS++NSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHG L
Sbjct: 181 HDDMVSKMNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGSRL 336
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: A0A835Z8J6_9STRA (Coatomer subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J6_9STRA) HSP 1 Score: 234 bits (597), Expect = 1.450e-68 Identity = 144/155 (92.90%), Postives = 151/155 (97.42%), Query Frame = 1
Query: 4 EDVVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGDCL 468
+ +V+RVN+DLFGGTDA+VKYVLEGHDRGVNWASFHPTLPLV+SGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQ FRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYD+H CL
Sbjct: 181 DTMVARVNTDLFGGTDAIVKYVLEGHDRGVNWASFHPTLPLVVSGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQNFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDSHAACL 335
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: A0A7S2V4C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4C4_9STRA) HSP 1 Score: 224 bits (572), Expect = 3.770e-66 Identity = 141/154 (91.56%), Postives = 148/154 (96.10%), Query Frame = 1
Query: 7 DVVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGDCL 468
++V+RVN+DLFGG DAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEV TM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIS+R+GVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYD H + L
Sbjct: 183 NMVARVNADLFGGNDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVDTMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISKRLGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDVHDNRL 336
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: F0YGR3_AURAN (Coatomer subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR3_AURAN) HSP 1 Score: 223 bits (568), Expect = 1.250e-64 Identity = 140/149 (93.96%), Postives = 145/149 (97.32%), Query Frame = 1
Query: 10 VVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTH 456
VVSRVN+DLFGG DAVVKYVLEGHDRGVNWASFHPTLPL+ISGADDRQVKLWRMNETKAWEV TM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIS+R+GVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAY +H
Sbjct: 185 VVSRVNADLFGGNDAVVKYVLEGHDRGVNWASFHPTLPLIISGADDRQVKLWRMNETKAWEVDTMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISKRLGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYASH 333
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: A0A8J2X1H8_9STRA (Coatomer subunit alpha n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1H8_9STRA) HSP 1 Score: 221 bits (563), Expect = 6.150e-64 Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 1
Query: 10 VVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGDCL 468
VVSRVN+DLFGG DA+VKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEV TM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIS+R+GVQTFRRENDRFWILAAHP QNLLAAGHDSGMIVFKLERERPA+ +H D L
Sbjct: 201 VVSRVNADLFGGNDAIVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVDTMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISKRLGVQTFRRENDRFWILAAHPVQNLLAAGHDSGMIVFKLERERPAFGSHLDTL 353
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: F0YHJ1_AURAN (Coatomer subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHJ1_AURAN) HSP 1 Score: 219 bits (558), Expect = 2.850e-63 Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 1
Query: 10 VVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTH 456
VVSRVN+DLFGG DA+VKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEV TM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIS+R+GVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPA+ ++
Sbjct: 175 VVSRVNADLFGGNDAIVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVDTMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISKRLGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAFASY 323
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: UPI0010AB01D5 (coatomer subunit alpha-1-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AB01D5) HSP 1 Score: 203 bits (517), Expect = 3.420e-63 Identity = 126/152 (82.89%), Postives = 141/152 (92.76%), Query Frame = 1
Query: 13 VSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGDCL 468
+S++N+D FGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVKLWRMN+TKAWEV T+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD ++R G+QTFRRE+DRFWIL+AHPE NLLAAGHDSGMIVFKLERERPA+ GD +
Sbjct: 43 LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATKRTGLQTFRREHDRFWILSAHPEMNLLAAGHDSGMIVFKLERERPAFSVSGDSM 194
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: A0A7S2RES0_9STRA (Coatomer subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES0_9STRA) HSP 1 Score: 219 bits (557), Expect = 4.030e-63 Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1
Query: 4 EDVVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHG 459
+ VVSRVN+DLFG DA+VKYVLEGHDRGVNWASFHPTLPLV+SGADDRQVKLWRMNETKAWEV T+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIS+RMG+QTFRRENDRFWILAAHPEQNLLAAGHD+GMIVFKLERERPAYD G
Sbjct: 183 DTVVSRVNADLFGSADALVKYVLEGHDRGVNWASFHPTLPLVVSGADDRQVKLWRMNETKAWEVDTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISRRMGIQTFRRENDRFWILAAHPEQNLLAAGHDTGMIVFKLERERPAYDICG 334
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Match: A0A5B7BTD6_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BTD6_DAVIN) HSP 1 Score: 201 bits (510), Expect = 6.270e-63 Identity = 124/152 (81.58%), Postives = 140/152 (92.11%), Query Frame = 1
Query: 13 VSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRQVKLWRMNETKAWEVHTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDISQRMGVQTFRRENDRFWILAAHPEQNLLAAGHDSGMIVFKLERERPAYDTHGDCL 468
+S++N+D FGG DAVVKYVLEGHDRGVNWASFHPTLPL++SGADDRQVK+WRMN+TKAWEV T+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD ++R G+QTFRRE+DRFW+LA+HPE NLLAAGHDSGMIVFKLERE PA+ GD L
Sbjct: 5 LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWEVDTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSTKRTGLQTFRREHDRFWVLASHPEMNLLAAGHDSGMIVFKLEREHPAFSVSGDSL 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139973.2785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139973.2785.1 >prot_H-elongata_contig139973.2785.1 ID=prot_H-elongata_contig139973.2785.1|Name=mRNA_H-elongata_contig139973.2785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp HEDVVSRVNSDLFGGTDAVVKYVLEGHDRGVNWASFHPTLPLVISGADDRback to top mRNA from alignment at H-elongata_contig139973:411..1615- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139973.2785.1 ID=mRNA_H-elongata_contig139973.2785.1|Name=mRNA_H-elongata_contig139973.2785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1205bp|location=Sequence derived from alignment at H-elongata_contig139973:411..1615- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139973:411..1615- >mRNA_H-elongata_contig139973.2785.1 ID=mRNA_H-elongata_contig139973.2785.1|Name=mRNA_H-elongata_contig139973.2785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig139973:411..1615- (Himanthalia elongata Himel1 dioecious)back to top |