mRNA_H-elongata_contig139783.2768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139783.2768.1
Unique NamemRNA_H-elongata_contig139783.2768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: D7FXP5_ECTSI (Aldose 1-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP5_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.030e-31
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:    3 HRIDIDTPEGFGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            HRID DT EGFGVSF TYGATLLSVR+GD+ G IEEVTLQH+TLD+VVAG A+YG+TVGRVCNRI GA F
Sbjct:   71 HRIDFDTTEGFGVSFTTYGATLLSVRSGDKDGAIEEVTLQHDTLDEVVAGDAYYGSTVGRVCNRIVGASF 140
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BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: A0A6H5KFI7_9PHAE (Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI7_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.920e-29
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:    3 HRIDIDTPEGFGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            +RID+DT EGFGVSF TYGATLLSVR+GDR G IEEVTLQH+TL+ VVAG A+YG+TVGRVCNRI GA F
Sbjct:   22 YRIDLDTTEGFGVSFTTYGATLLSVRSGDRDGAIEEVTLQHDTLEGVVAGDAYYGSTVGRVCNRIVGASF 91
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BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: A0A7V3H9L8_9PROT (Aldose 1-epimerase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7V3H9L8_9PROT)

HSP 1 Score: 68.2 bits (165), Expect = 8.940e-12
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:    6 RIDIDTPEGFGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            +  +    G      +YGATL+++   DR G++E + L  +TLD  +AGT ++GATVGR  NRIAGA+F
Sbjct:   36 KFTLSNANGLSAEIMSYGATLMALHTPDRRGRLENIVLGFDTLDRYLAGTPYFGATVGRYANRIAGARF 104
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BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: A0A7C6FNT1_9FIRM (Aldose 1-epimerase n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A7C6FNT1_9FIRM)

HSP 1 Score: 67.4 bits (163), Expect = 1.610e-11
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:    6 RIDIDTPE---GFGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            RI+  T E   G+ VS   YGA++ S++  DR GKIE+V L  +TL+     TA+ GAT+GRVCNRI GA +
Sbjct:   16 RINCYTMENRHGYSVSIINYGASIQSIKVPDRCGKIEDVVLGFDTLEGYQNNTAYIGATIGRVCNRIDGASY 87
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BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: A0A8J3EUY2_9ACTN (Aldose 1-epimerase n=1 Tax=Egicoccus halophilus TaxID=1670830 RepID=A0A8J3EUY2_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 3.010e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:   39 VSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            V+ + YGATL++VRA DRSG++ +V L H+ +   V+G  F GATVGRV NRI GA F
Sbjct:   27 VAVSDYGATLVAVRAPDRSGRLADVVLGHDHVSGYVSGDGFLGATVGRVANRIGGASF 84
[Close]
BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: A0A7C4ZGQ2_9PROT (Aldose 1-epimerase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C4ZGQ2_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 3.040e-11
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:    6 RIDIDTPEGFGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            R  +    G      +YGATL+++R  DRSG+ E + L  + L+  +AGT ++GATVGR  NRIAGA+F
Sbjct:   20 RFVLRNAHGITADLMSYGATLMALRTPDRSGRCENIVLGFDALEPYLAGTPYFGATVGRYANRIAGARF 88
[Close]
BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: A0A814VYD0_9BILA (Aldose 1-epimerase n=9 Tax=Adineta steineri TaxID=433720 RepID=A0A814VYD0_9BILA)

HSP 1 Score: 66.2 bits (160), Expect = 4.130e-11
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:    6 RIDIDTPEGFGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            +  + TP+GF VS   YGA + S+R  D+  +I E+TL ++TL+  V    F+GATVGRV NRI   +F
Sbjct:   22 KYTLSTPDGFEVSLIDYGAIIQSIRQPDKQNQIAEITLGYDTLEGYVDDQCFFGATVGRVTNRIKNGRF 90
[Close]
BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: A0A142YCZ4_9PLAN (Aldose 1-epimerase n=1 Tax=Planctomyces sp. SH-PL62 TaxID=1636152 RepID=A0A142YCZ4_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 6.170e-11
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 3 
Query:   39 VSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            V  ATYGAT++S+ A DR GK+++VTL  +TL+  +    ++GATVGRV NRIA  KF
Sbjct:   63 VKVATYGATIVSIEAPDRDGKVDDVTLGFDTLEGYLGEHPYFGATVGRVANRIAKGKF 120
[Close]
BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: UPI0005EEC084 (galactose mutarotase n=1 Tax=Falsirhodobacter sp. alg1 TaxID=1472418 RepID=UPI0005EEC084)

HSP 1 Score: 65.5 bits (158), Expect = 7.830e-11
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 3 
Query:   27 EGFGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKFA 215
            +G  V+  T+GA + S++  DR+G++EEV L H++L   +A  +F+GATVGR  NRIAG++FA
Sbjct:   26 DGIRVAIITFGAAIQSLQVPDRAGRMEEVVLGHDSLQPYLAKRSFFGATVGRYANRIAGSRFA 88
[Close]
BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Match: UPI00027682E3 (aldose 1-epimerase-like isoform X1 n=2 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI00027682E3)

HSP 1 Score: 65.5 bits (158), Expect = 8.070e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:   33 FGVSFATYGATLLSVRAGDRSGKIEEVTLQHETLDDVVAGTAFYGATVGRVCNRIAGAKF 212
            F V    YGA ++SV   D++GKI++V L ++T+D+ +  T+++GATVGRV NRI GA+F
Sbjct:   36 FAVKITDYGARIISVLLPDKNGKIDDVVLGYDTIDEYLNDTSYFGATVGRVANRIGGAQF 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139783.2768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXP5_ECTSI6.030e-3180.00Aldose 1-epimerase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KFI7_9PHAE1.920e-2978.57Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A7V3H9L8_9PROT8.940e-1243.48Aldose 1-epimerase n=1 Tax=Proteobacteria bacteriu... [more]
A0A7C6FNT1_9FIRM1.610e-1148.61Aldose 1-epimerase n=1 Tax=Clostridiales bacterium... [more]
A0A8J3EUY2_9ACTN3.010e-1155.17Aldose 1-epimerase n=1 Tax=Egicoccus halophilus Ta... [more]
A0A7C4ZGQ2_9PROT3.040e-1144.93Aldose 1-epimerase n=1 Tax=Proteobacteria bacteriu... [more]
A0A814VYD0_9BILA4.130e-1144.93Aldose 1-epimerase n=9 Tax=Adineta steineri TaxID=... [more]
A0A142YCZ4_9PLAN6.170e-1153.45Aldose 1-epimerase n=1 Tax=Planctomyces sp. SH-PL6... [more]
UPI0005EEC0847.830e-1147.62galactose mutarotase n=1 Tax=Falsirhodobacter sp. ... [more]
UPI00027682E38.070e-1148.33aldose 1-epimerase-like isoform X1 n=2 Tax=Solanum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139783contigH-elongata_contig139783:160..1494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size216
Cds size177
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139783.2768.1prot_H-elongata_contig139783.2768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139783 198..1494 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.6213448-UTR-H-elongata_contig139783:159..1971622929830.6213448-UTR-H-elongata_contig139783:159..197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139783 160..197 -
1691679175.2403889-UTR-H-elongata_contig139783:159..1971691679175.2403889-UTR-H-elongata_contig139783:159..197Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139783 160..197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.6312196-CDS-H-elongata_contig139783:197..2641622929830.6312196-CDS-H-elongata_contig139783:197..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139783 198..264 -
1691679175.248308-CDS-H-elongata_contig139783:197..2641691679175.248308-CDS-H-elongata_contig139783:197..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139783 198..264 -
1622929830.6409123-CDS-H-elongata_contig139783:1384..14941622929830.6409123-CDS-H-elongata_contig139783:1384..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139783 1385..1494 -
1691679175.261583-CDS-H-elongata_contig139783:1384..14941691679175.261583-CDS-H-elongata_contig139783:1384..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139783 1385..1494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139783.2768.1

>prot_H-elongata_contig139783.2768.1 ID=prot_H-elongata_contig139783.2768.1|Name=mRNA_H-elongata_contig139783.2768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
CIGSTSIPRRASGSALPPTGRRCSLFALGTDRERSRRLRCSTKPWMMSWR
ALPSMGLL*
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mRNA from alignment at H-elongata_contig139783:160..1494-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139783.2768.1 ID=mRNA_H-elongata_contig139783.2768.1|Name=mRNA_H-elongata_contig139783.2768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1335bp|location=Sequence derived from alignment at H-elongata_contig139783:160..1494- (Himanthalia elongata Himel1 dioecious)
TGCATCGGATCGACATCGATACCCCGGAGGGCTTCGGGGTCAGCTTTGCC
ACCTACGGGGCGACGCTGCTCTCTGTTCGCGCTGGGGACAGATCGGGAAA
GATCGAGGAGGTAAGTAAGAAGAGTACATGACAGTATGTTCGTGAGACTA
GGAACAGATTATGAGATGAGGAATGAAAAATCCCCCATCTCTTATTTTAT
TATCCTTTTTAAATCTCGCGAACATAGAAGAACCACACTTAGTTCAAACT
TTTCCCCATTCCTCATCTCATTATCTGTTCCTAGTCTCACGAACATACTG
TTACATGTGGTATGTGTGTGTGTGTGTGTGTTTGTGTATTCATTAAATTG
CCCATAACCGTGCAATCCGGCTCTGTCATGCTAGCTCTTCTAGGCTACTC
TCGCATTGATCCTCCCAGTGGGGGATTCATGTGTATTTATAAAATTACAA
ATAATTTTGTGTAAGGGTGAAAAAGACGCGCGAGAAATGCGATTTCTAAC
TCTGTACCACATGTAATTTATAAATCAGTACCAGTATATTATACGAATTA
TATTAGTATTTTTAAAAACTTTAACTTATTCCAAGGTCCAGAACATCCAC
ACCTTTTTAGCACATATTTTGTAATTTATGATGTAAAGTAATAAATTCCC
GACAAACTTATTACGATTTATCATGTGTGAAGATTTTGTACTCAAGGGTA
GTATTGCACCCCTCATGGCGCTAAGAAGGCGTGGGTGTTCGGAGGGGGTT
GGAATGAGTGTGATTCAAAGCTTGAATTAGCATTTGTTTTTCTTTTGTCA
CTCAAGAGGTGTACATTTTAAGATATATGTACCTTCTTATTGTATGTACC
TTCTTAATGTAGTGGTTTATTTTTAAAACATTATTCGTTTTCCCCAATAA
TAGTAAATTGATTCATCGGGTCAACGGTGTATTTAATGTCGAGAGTCCCA
TCATTATCCCGTACACTTACAAAATATAAGTTATTTGGGAACGGCAAACG
TTTGTACCTTTTTGACGTTATACTACGTATTTATCTTGATTTCTCAAAAG
ACGCAACGGCGCCCTGTCAGGGCGGGCGTTAACGGGGTTACAAAAATTAA
AATTTCCAGCCGATTTAAATTAAAATCGGCTGGAATTTAAACTTTTGTAA
CTCCGTTAATACCCGCCCTCATGGGCAGGGAAATTATGTACCTTTTTTAA
CGCCTTGTTGGGTACCTTGTTTTCTCTCAGGTTACGTTGCAGCACGAAAC
CTTGGATGATGTCGTGGCGGGCACTGCCTTCTATGGGGCTACTGTAGGTC
GTGTGTGCAACCGAATCGCAGGGGCCAAGTTTGCA
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Coding sequence (CDS) from alignment at H-elongata_contig139783:160..1494-

>mRNA_H-elongata_contig139783.2768.1 ID=mRNA_H-elongata_contig139783.2768.1|Name=mRNA_H-elongata_contig139783.2768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig139783:160..1494- (Himanthalia elongata Himel1 dioecious)
TGCATCGGATCGACATCGATACCCCGGAGGGCTTCGGGGTCAGCTTTGCC
ACCTACGGGGCGACGCTGCTCTCTGTTCGCGCTGGGGACAGATCGGGAAA
GATCGAGGAGTGCATCGGATCGACATCGATACCCCGGAGGGCTTCGGGGT
CAGCTTTGCCACCTACGGGGCGACGCTGCTCTCTGTTCGCGCTGGGGACA
GATCGGGAAAGATCGAGGAGGTTACGTTGCAGCACGAAACCTTGGATGAT
GTCGTGGCGGGCACTGCCTTCTATGGGGCTACTGTAGGTTACGTTGCAGC
ACGAAACCTTGGATGATGTCGTGGCGGGCACTGCCTTCTATGGGGCTACT
GTAG
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