mRNA_H-elongata_contig139775.2767.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139775.2767.1
Unique NamemRNA_H-elongata_contig139775.2767.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139775.2767.1 vs. uniprot
Match: A0A6H5KR75_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KR75_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-17
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 MAVEKGLPPVWLGLDLSTQSLTLVVLPDRTSERHVYLDSVIYARDLPQYQTEHGM 165
            M  E  LPP+WLG+DLSTQSLTLVVL D  +  HVYLDSV+Y  +LPQYQTEHGM
Sbjct:    1 MISEDPLPPLWLGVDLSTQSLTLVVLDDDPAADHVYLDSVVYDTELPQYQTEHGM 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139775.2767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KR75_9PHAE3.710e-1770.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139775contigH-elongata_contig139775:1339..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7FW01
EggNOG free text desc.xylulokinase activity
EggNOG OGsCOG1070@1,KOG2531@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.588678-CDS-H-elongata_contig139775:1338..15031622929830.588678-CDS-H-elongata_contig139775:1338..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139775 1339..1503 +
1691679175.228562-CDS-H-elongata_contig139775:1338..15031691679175.228562-CDS-H-elongata_contig139775:1338..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139775 1339..1503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139775.2767.1prot_H-elongata_contig139775.2767.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139775 1339..1503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139775.2767.1

>prot_H-elongata_contig139775.2767.1 ID=prot_H-elongata_contig139775.2767.1|Name=mRNA_H-elongata_contig139775.2767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MAVEKGLPPVWLGLDLSTQSLTLVVLPDRTSERHVYLDSVIYARDLPQYQ
TEHGM
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mRNA from alignment at H-elongata_contig139775:1339..1503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139775.2767.1 ID=mRNA_H-elongata_contig139775.2767.1|Name=mRNA_H-elongata_contig139775.2767.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig139775:1339..1503+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTAGAGAAAGGATTGCCTCCTGTGTGGCTTGGCCTAGATCTCAG
CACGCAATCCCTGACGCTTGTCGTTCTCCCGGATAGGACTTCAGAACGTC
ACGTCTACCTCGATTCCGTGATTTACGCAAGAGATCTTCCTCAGTACCAA
ACGGAGCACGGTATG
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Coding sequence (CDS) from alignment at H-elongata_contig139775:1339..1503+

>mRNA_H-elongata_contig139775.2767.1 ID=mRNA_H-elongata_contig139775.2767.1|Name=mRNA_H-elongata_contig139775.2767.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig139775:1339..1503+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTAGAGAAAGGATTGCCTCCTGTGTGGCTTGGCCTAGATCTCAG
CACGCAATCCCTGACGCTTGTCGTTCTCCCGGATAGGACTTCAGAACGTC
ACGTCTACCTCGATTCCGTGATTTACGCAAGAGATCTTCCTCAGTACCAA
ACGGAGCACGGTATGATGGCTGTAGAGAAAGGATTGCCTCCTGTGTGGCT
TGGCCTAGATCTCAGCACGCAATCCCTGACGCTTGTCGTTCTCCCGGATA
GGACTTCAGAACGTCACGTCTACCTCGATTCCGTGATTTACGCAAGAGAT
CTTCCTCAGTACCAAACGGAGCACGGTATG
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