mRNA_H-elongata_contig13973.2763.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13973.2763.1
Unique NamemRNA_H-elongata_contig13973.2763.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: A0A6H5KUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA4_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.030e-51
Identity = 98/122 (80.33%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:    1 ILALRPMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGA--LWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRFAHSPVPSAI 360
            ILA RPMWRNFFENSATVQADHR LALTTT AALGMFWYARRGA  G   LWAALP A R AT+ TAGLV AQASLG+TTLL CAPL LAA+HQAGALTVLASS+W AHS+RFAH P PSA+
Sbjct:  356 ILAFRPMWRNFFENSATVQADHRALALTTTGAALGMFWYARRGAGGGTGTLWAALPAAPRAATTATAGLVTAQASLGITTLLQCAPLPLAASHQAGALTVLASSMWAAHSLRFAHVP-PSAV 476
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: D7G2P2_ECTSI (COX15 homolog, cytochrome c oxidase assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P2_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 2.560e-51
Identity = 97/122 (79.51%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:    1 ILALRPMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAG--ALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRFAHSPVPSAI 360
            ILA RPMWRNFFENSATVQADHR LAL+TT AALGMFWYARRGA  G  ALWAALP A R AT+ TAGLV AQASLG+TTLL CAPL LAA+HQAGALTVLASS+W AHS+RFA  P PSA+
Sbjct:  239 ILAFRPMWRNFFENSATVQADHRALALSTTGAALGMFWYARRGAGGGTGALWAALPAAPRAATTATAGLVTAQASLGITTLLQCAPLPLAASHQAGALTVLASSMWAAHSLRFARVP-PSAV 359
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: A0A835YUA1_9STRA (COX15-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.290e-29
Identity = 66/116 (56.90%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:    1 ILALRPMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRFAHSPV 348
            IL + P+WRNFFEN+ATVQA HR LA+T   AA+G F  ARRG   GALW ALP  +R+A S    +   Q +LGV+TLL C PL LAAAHQAGAL +L   +W+AH++RFA + V
Sbjct:  247 ILEMEPLWRNFFENTATVQAVHRALAMTALGAAVGTFVIARRGQM-GALWVALPAGARSAQSFVTAVALGQVTLGVSTLLLCVPLPLAAAHQAGALALLGGGVWSAHALRFAAARV 361
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: A0A835Z6N7_9STRA (COX15-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6N7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.980e-26
Identity = 63/112 (56.25%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:    1 ILALRPMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRFA 336
            IL ++P+WRNFFEN+ATVQA HR LA TT  A       ARRG A GALW+ALP  +R A    A +   Q +LGV TLL   PL LAAAHQAGAL +L +S+W+ H++RFA
Sbjct:  239 ILNMQPLWRNFFENTATVQASHRTLAFTTLGAVAATLLAARRGGA-GALWSALPAEARRAQLAMATVATGQVTLGVATLLLYVPLPLAAAHQAGALALLGTSVWSVHALRFA 349
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: A0A7S1U911_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U911_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.010e-24
Identity = 59/113 (52.21%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    7 ALRPMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGA-LWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRFAHS 342
            +L+P +RNFFEN+  VQ DHRVLA++T   A     YAR   A G  LW  LPP++R A + TA + AAQ  LG++TLL   P+ LAAAHQAG+L VL+SS+W   S+RFA++
Sbjct:  101 SLQPWYRNFFENTPLVQLDHRVLAVSTAAGAXXXXXYARAATAGGKPLWGYLPPSARRAVAATAVVAAAQVGLGISTLLLYVPIGLAAAHQAGSLVVLSSSLWMLRSLRFANA 213
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: W7U5C0_9STRA (Cytochrome c oxidase assembly protein cox15-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5C0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.840e-21
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:   10 LRPMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRF 333
            + P WRNFFEN+A VQ DHRVLAL+T       F  ARRG     +W  LP  +RTA + T G+  AQ +LG++TLL   P+ LAAAHQAG+L +L+   W+ HS++F
Sbjct:  325 MEPKWRNFFENTALVQLDHRVLALSTAGLISATFLAARRGQ----VWRVLPAETRTALTATVGMAGAQVALGISTLLMYVPVPLAAAHQAGSLVLLSLLSWSVHSLKF 428
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: F0W1W5_9STRA (Cytochrome oxidase assembly protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1W5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.060e-20
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 ILALRPMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRFAHS 342
            +  LRP ++N FEN+A VQ DHRVLAL++  A   ++  ARR      +W  LP  +R A + + G++ +Q  LG+TTLL+C P+ L  AHQ GA+ +++SS+WT HS+ FA S
Sbjct:  331 VFDLRPFYKNIFENTALVQLDHRVLALSSLGAYSFVYALARRPQ----VWRQLPSQARGALNLSMGVIMSQVLLGITTLLNCVPIPLGIAHQTGAIVLMSSSLWTLHSLNFARS 440
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: S3BRD3_OPHP1 (Cytochrome c oxidase assembly protein cox15 n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3BRD3_OPHP1)

HSP 1 Score: 90.9 bits (224), Expect = 6.660e-19
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:   22 WRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMRFAHS 342
            WRN  EN + VQ DHR+LA+TT TA + +FWY+RRGA   AL   LP +++  T     LV  QA+LG+ TL++  P HLAA HQAG+L +L   +   H +R   S
Sbjct:  403 WRNMLENPSLVQLDHRILAMTTFTAIMALFWYSRRGAGVAAL---LPRSAKKGTMGVVHLVLLQATLGIATLIYMVPTHLAATHQAGSLALLTGVLVLGHRLRMPKS 506
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: UPI0015C305C2 (cytochrome c oxidase assembly protein subunit 15 n=1 Tax=Geosmithia morbida TaxID=1094350 RepID=UPI0015C305C2)

HSP 1 Score: 89.7 bits (221), Expect = 1.580e-18
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   22 WRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAH 321
            WRN  EN  TVQ DHR+LA+TT T+ L +F+YAR G  A    AALP  +R +T+    LV  QA+LG++TL++  P+HLAA HQAG++ VL  ++  AH
Sbjct:  372 WRNMLENPTTVQLDHRILAMTTFTSILALFFYARTGRLA----AALPRDARRSTTGLVHLVCLQATLGISTLIYLVPIHLAATHQAGSIAVLTGALVLAH 467
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BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Match: A0A1Y2C008_9FUNG (Cytochrome oxidase assembly n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C008_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 1.950e-18
Identity = 47/105 (44.76%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:   16 PMWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPASRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTAHSMR 330
            P+WRN  EN++ VQ +HR LA+TT+TA +G+++ +RR          LP +SR A +   G+ A Q SLG++TLL+  P+ LAAAHQ+G+L +L++S+W  H++R
Sbjct:  290 PLWRNMLENASAVQFNHRFLAMTTSTAVVGLWFASRRFT--------LPASSRLAVNALLGVTALQVSLGISTLLYLVPVPLAAAHQSGSLLLLSTSLWLLHTLR 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13973.2763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUA4_9PHAE2.030e-5180.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2P2_ECTSI2.560e-5179.51COX15 homolog, cytochrome c oxidase assembly prote... [more]
A0A835YUA1_9STRA1.290e-2956.90COX15-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835Z6N7_9STRA1.980e-2656.25COX15-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1U911_9STRA1.010e-2452.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7U5C0_9STRA1.840e-2150.00Cytochrome c oxidase assembly protein cox15-like p... [more]
F0W1W5_9STRA8.060e-2044.74Cytochrome oxidase assembly protein putative n=1 T... [more]
S3BRD3_OPHP16.660e-1946.73Cytochrome c oxidase assembly protein cox15 n=1 Ta... [more]
UPI0015C305C21.580e-1850.00cytochrome c oxidase assembly protein subunit 15 n... [more]
A0A1Y2C008_9FUNG1.950e-1844.76Cytochrome oxidase assembly n=1 Tax=Rhizoclosmatiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13973contigH-elongata_contig13973:570..1210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue6e-39
Seed eggNOG ortholog2880.D7G2P2
Preferred nameCOX15
KEGG rclassRC00769
KEGG koko:K02259
KEGG TC3.D.4.4
KEGG ReactionR07412
KEGG Pathwayko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714
KEGG ModuleM00154
GOsGO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006784,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009055,GO:0009058,GO:0009987,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016226,GO:0016491,GO:0016651,GO:0016653,GO:0016675,GO:0016676,GO:0018130,GO:0019438,GO:0019866,GO:0022607,GO:0022857,GO:0022890,GO:0022900,GO:0022904,GO:0031090,GO:0031163,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0033013,GO:0033014,GO:0034220,GO:0034641,GO:0042168,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0045333,GO:0046148,GO:0046160,GO:0046483,GO:0048037,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051536,GO:0051537,GO:0051540,GO:0055085,GO:0055114,GO:0071704,GO:0071840,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.Cytochrome C oxidase assembly protein
EggNOG OGsCOG1612@1,KOG2725@2759
Ec32 ortholog descriptionCOX15 homolog, cytochrome c oxidase assembly protein
Ec32 orthologEc-11_002950.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13973.2763.1prot_H-elongata_contig13973.2763.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13973 570..1192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.308869-CDS-H-elongata_contig13973:569..7161622929830.308869-CDS-H-elongata_contig13973:569..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 570..716 -
1691679175.0820901-CDS-H-elongata_contig13973:569..7161691679175.0820901-CDS-H-elongata_contig13973:569..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 570..716 -
1622929830.3246162-CDS-H-elongata_contig13973:997..11921622929830.3246162-CDS-H-elongata_contig13973:997..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 998..1192 -
1691679175.0940843-CDS-H-elongata_contig13973:997..11921691679175.0940843-CDS-H-elongata_contig13973:997..1192Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13973 998..1192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.3354053-UTR-H-elongata_contig13973:1192..12101622929830.3354053-UTR-H-elongata_contig13973:1192..1210Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13973 1193..1210 -
1691679175.1028934-UTR-H-elongata_contig13973:1192..12101691679175.1028934-UTR-H-elongata_contig13973:1192..1210Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13973 1193..1210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13973.2763.1

>prot_H-elongata_contig13973.2763.1 ID=prot_H-elongata_contig13973.2763.1|Name=mRNA_H-elongata_contig13973.2763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MWRNFFENSATVQADHRVLALTTTTAALGMFWYARRGAAAGALWAALPPA
SRTATSTTAGLVAAQASLGVTTLLHCAPLHLAAAHQAGALTVLASSIWTA
HSMRFAHSPVPSAI
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mRNA from alignment at H-elongata_contig13973:570..1210-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13973.2763.1 ID=mRNA_H-elongata_contig13973.2763.1|Name=mRNA_H-elongata_contig13973.2763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=641bp|location=Sequence derived from alignment at H-elongata_contig13973:570..1210- (Himanthalia elongata Himel1 dioecious)
ATTCTAGCCTTGCGACCGATGTGGAGAAATTTCTTCGAGAACTCTGCAAC
CGTGCAGGCGGATCACCGAGTCCTTGCGCTGACGACGACCACCGCTGCCC
TCGGAATGTTTTGGTACGCGCGGAGAGGTGCCGCCGCAGGGGCTTTGTGG
GCGGCTTTGCCCCCGGCGTCCAGGACCGCGACGTCTACCACTGCCGGCCT
TGTCGCGGCGCAGGTGAGCGCACGATGTTCACAACACTTCACTCTCTCCG
AGTCCCAGTGTTTCCTACGGTATCCACGAGTTATATGTCTCTTGCGCCCC
ACGATTTTGGTCTGTCGTCGTCAACCGCACGTGTGCTGGAGACGCGTTCC
GTAATAAGCGTTCGCATCTCCCCTCGCCCCGCGCACCTACCCTATTTTTT
ACCATCTCTGCTCCAAGCTTCAAGCCCAGAATGTATATAAATATGTATAT
ATACTGTAAATATGAACGCCCGTTTGTTTTATTCGTGTTTGCAGGCATCG
CTAGGGGTCACAACGCTCCTGCACTGTGCGCCCCTGCATCTGGCCGCGGC
GCACCAAGCCGGCGCTCTCACGGTCCTCGCCTCTTCCATATGGACGGCGC
ACTCGATGAGATTTGCCCACTCACCGGTGCCGTCCGCGATA
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Coding sequence (CDS) from alignment at H-elongata_contig13973:570..1210-

>mRNA_H-elongata_contig13973.2763.1 ID=mRNA_H-elongata_contig13973.2763.1|Name=mRNA_H-elongata_contig13973.2763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig13973:570..1210- (Himanthalia elongata Himel1 dioecious)
ATGTGGAGAAATTTCTTCGAGAACTCTGCAACCGTGCAGGCGGATCACCG
AGTCCTTGCGCTGACGACGACCACCGCTGCCCTCGGAATGTTTTGGTACG
CGCGGAGAGGTGCCGCCGCAGGGGCTTTGTGGGCGGCTTTGCCCCCGGCG
TCCAGGACCGCGACGTCTACCACTGCCGGCCTTGTCGCGGCGCAGATGTG
GAGAAATTTCTTCGAGAACTCTGCAACCGTGCAGGCGGATCACCGAGTCC
TTGCGCTGACGACGACCACCGCTGCCCTCGGAATGTTTTGGTACGCGCGG
AGAGGTGCCGCCGCAGGGGCTTTGTGGGCGGCTTTGCCCCCGGCGTCCAG
GACCGCGACGTCTACCACTGCCGGCCTTGTCGCGGCGCAGGCATCGCTAG
GGGTCACAACGCTCCTGCACTGTGCGCCCCTGCATCTGGCCGCGGCGCAC
CAAGCCGGCGCTCTCACGGTCCTCGCCTCTTCCATATGGACGGCGCACTC
GATGAGATTTGCCCACTCACCGGTGCCGTCCGCGATAGCATCGCTAGGGG
TCACAACGCTCCTGCACTGTGCGCCCCTGCATCTGGCCGCGGCGCACCAA
GCCGGCGCTCTCACGGTCCTCGCCTCTTCCATATGGACGGCGCACTCGAT
GAGATTTGCCCACTCACCGGTGCCGTCCGCGATA
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