mRNA_H-elongata_contig13962.2759.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A6H5K2Q3_9PHAE (GPN-loop GTPase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2Q3_9PHAE) HSP 1 Score: 428 bits (1101), Expect = 2.380e-148 Identity = 226/292 (77.40%), Postives = 242/292 (82.88%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDK-RRDGETPEHKVEAIAQEELADSDG-----GTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPD----SRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDV 847
DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELD FD++EYI+FDCPGQVELYSHVPVMRN+LDQLKSWNYNVCAVFLLDATFITDPAKF+SGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQ+GVHFGTAPF++ R GE G A+ G A A+R +ELQPRGRL +G ++ LP+LARLTEAIS VLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDD+
Sbjct: 56 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWNYNVCAVFLLDATFITDPAKFMSGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQRGVHFGTAPFNRGERGGEEDXXXXXXXXXXXXXXXXXXXXXXGEESADVGTGATTAQR-EELQPRGRLQVLGAQGGVEGAQRGPLPRLARLTEAISGVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDI 346
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A835YPS9_9STRA (GPN-loop GTPase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS9_9STRA) HSP 1 Score: 291 bits (744), Expect = 2.310e-94 Identity = 156/298 (52.35%), Postives = 192/298 (64.43%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYS----------------HVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDV 847
DLI+L D MEELELGPNGGLVYCMEYLLDN+DWLKDELDN+D++EYIVFDCPGQVELYS H+PVM+ +L+ + W Y VC V+ LDATF+ DPAKFISG LLSLSAMVQLELPH+NVLTKCDLAD EVE+FLD ++AAL SMH T +R GE GG +GA G A Q + ++ + LP+L RLT AI+ ++D+++MV F+P+DI D++ +ALVL HAD+I QYGE LEPK P D+
Sbjct: 55 DLITLADVMEELELGPNGGLVYCMEYLLDNVDWLKDELDNYDDDEYIVFDCPGQVELYSYEXXXXXXXXXXXXXXHIPVMKRLLEHFRYWGYTVCGVYALDATFMGDPAKFISGTLLSLSAMVQLELPHINVLTKCDLADMEEVEKFLDLDSAALASMH--------ELATRSSRQRLGGEQ-----------------GG-----QGAVGGAAASDAARQEGSHIAAPASSSAQQRALPRLERLTAAIAGIIDEFSMVGFIPMDISDDQSVALVLQHADHITQYGEGLEPKDPDDEA 322
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A7S2XYS1_9STRA (GPN-loop GTPase 3 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYS1_9STRA) HSP 1 Score: 266 bits (680), Expect = 1.560e-85 Identity = 142/281 (50.53%), Postives = 181/281 (64.41%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDD 844
DLIS++D MEEL GPNG LVYCMEYLL+NMDWL+DELD + ++EYI+FDCPGQVELYSH+PVMR+++D+LK W+YNVC VFL+D+ + DP K +SG L+SLSAMVQLELPH+NVLTKCDL D+ ++ F + E + ++H QA G G L R RNQ KLARLT+AI +V+DD+TMV+F+PLD+RDE+ I LVL HAD+++QYGEDLEPK+PKDD
Sbjct: 48 DLISVDDVMEELGYGPNGALVYCMEYLLENMDWLRDELDEYGDDEYIIFDCPGQVELYSHIPVMRDVVDRLKMWDYNVCGVFLVDSLVVGDPMKLLSGTLISLSAMVQLELPHVNVLTKCDLVDKEILDNFFE-EISVRQAVHNSQAVGG---------------------------------------------------------GTLLR------RNQ---KLARLTDAICSVVDDFTMVSFVPLDLRDEDSIGLVLAHADHVIQYGEDLEPKEPKDD 261
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A024U8U1_9STRA (GPN-loop GTPase 3 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024U8U1_9STRA) HSP 1 Score: 236 bits (603), Expect = 4.690e-74 Identity = 121/283 (42.76%), Postives = 166/283 (58.66%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYNVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDVS 850
DLISLED MEEL GPNGGLVYCMEYL+ N+DWL+D L + +++Y +FDCPGQ+ELYSH+PVM+++ L+ W++++C V+L+D+ FI+DP+KFISG L SLSAMVQLELPH+NVLTKCDL D E+E++LD + L+ E + N K L+ A+ NV++DY+MV F+P++I DEE I +VLHH D+ + YGED+EPK+PKDD++
Sbjct: 55 DLISLEDVMEELGYGPNGGLVYCMEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQEWSFSICGVYLIDSLFISDPSKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLL-------------------------------ETLT--------------------------------------------NATTNKWQPLSRAVCNVINDYSMVAFVPMNITDEESIEMVLHHIDHAINYGEDVEPKEPKDDMA 262
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A6U0IL03_9STRA (GPN-loop GTPase 3 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IL03_9STRA) HSP 1 Score: 239 bits (609), Expect = 5.250e-74 Identity = 129/276 (46.74%), Postives = 183/276 (66.30%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
DLIS++D MEEL LGPNGGL+YCMEYLL+N+DWL D L+ FD++EY++ DCPGQ+ELY+HVPVMR I+D +++ Y ++ +VF++DATF+ D KFISG+LLSLSAM+ LELPH+NVL+KCDL D+ V+ L+TE+A + +A++ F++ GE+ E + + + + +A + KR ++ R R K RLTEAIS++LDD++MV+F+PLDI DEE I LVL D+++QYGED E
Sbjct: 61 DLISVDDVMEELGLGPNGGLIYCMEYLLENLDWLLDNLNQFDDDEYLIVDCPGQIELYTHVPVMRRIIDAMRTAGYASDMVSVFIVDATFVADAPKFISGSLLSLSAMIALELPHVNVLSKCDLVDKERVDEILETESAIQLWEIEDRARRREELAVEAFER---GESMEPYLAGSSASKGFEPGEKLVKANDTPSKESQKRSAAIEHRRR---------------KRDRLTEAISSLLDDFSMVSFMPLDITDEESIDLVLMTVDHVIQYGEDSE 318
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: K0R8J1_THAOC (GPN-loop GTPase 3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8J1_THAOC) HSP 1 Score: 238 bits (606), Expect = 6.350e-74 Identity = 128/276 (46.38%), Postives = 179/276 (64.86%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
DLIS++D MEEL+LGPNGGLVYCMEYLL+NMDWL++ LDNFD++EY++ DCPGQ+ELY+H+PVM I+DQLK W Y + +VF++DATF+T+PAKFISG+LL+LSAM+ L+LPH+NVL+KCDL + + +ER L+ E+A + + G + F + R K A ++EE D++ R R ++ K RLT AI ++LDDY+MV F+PL+I DE+ I+ V+ D+ +QYGED E
Sbjct: 59 DLISVDDVMEELQLGPNGGLVYCMEYLLENMDWLQENLDNFDDDEYLILDCPGQIELYTHIPVMNKIIDQLKLWGYLDKMVSVFVVDATFVTEPAKFISGSLLALSAMISLQLPHVNVLSKCDLVEEASMERVLEMESALQL---WDVLGDGEGSALSMFHELRP------KKSARSEEE--------------------------------DKLVR--KRQERERKWNRLTVAICSLLDDYSMVGFIPLNINDEDSISHVMLTTDHAIQYGEDNE 291
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A7S2RLE6_9STRA (GPN-loop GTPase 3 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLE6_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.840e-73 Identity = 131/276 (47.46%), Postives = 180/276 (65.22%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNYN--VCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
DLIS++D MEEL LGPNGGL+YC+EYLL+NMDWL+DELD FD++EY++ DCPGQ+ELY+H+PVM+ I+DQL+ W Y+ V +VF++DATF+ D KFISG+LLSLSAM+ LELPH+NV++KCDL D +VER L TE+A + Y + + K +D +E + + + G + +K + D+R QK KL T++I NVLDD++MV+F+PL+I+DEE I VL H D +QYGED E
Sbjct: 63 DLISVDDVMEELGLGPNGGLLYCIEYLLENMDWLQDELDAFDDDEYLLLDCPGQIELYTHIPVMKRIVDQLRLWGYDGTVASVFVVDATFLCDAPKFISGSLLSLSAMLSLELPHVNVMSKCDLVDNEQVERVLGTESATQL---YELEEYNL--------KHQD-------LEDFKRVTILEKSGNASKEDKAWRRQV-------------------DARRQKQNKL---TKSICNVLDDFSMVSFIPLNIKDEESIDNVLMHVDQTIQYGEDTE 298
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A6U3ZEP1_9STRA (GPN-loop GTPase 3 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZEP1_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.790e-73 Identity = 129/283 (45.58%), Postives = 175/283 (61.84%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDD 844
DLIS++D MEEL LGPNG L+YCMEYLL+N+DWL+DELDNFD++EY++ DCPGQ+ELY+H+PVMR ++DQ++ W Y ++ +VF++DATF+ D KFISG+LLSLSAM+ +ELPH+NVL+KCDL + V+R LD +A + G K+ DG+ I++EE +L + R K RLTEAI +LDDYTMV+FLPL+I DE+ I VL D+ VQYGED+E + + D
Sbjct: 61 DLISVDDVMEELGLGPNGSLIYCMEYLLENLDWLQDELDNFDDDEYLILDCPGQIELYTHIPVMRRVIDQMRMWGYESSMMSVFVVDATFVCDAPKFISGSLLSLSAMIAMELPHVNVLSKCDLVEEERVDRILDVGSATELWNIEEYGSSVAIVGDEMAGKKDDGDE-------ISKEER-----------------------------QLIELRRK--------KRNRLTEAICTLLDDYTMVSFLPLNITDEDSIDHVLSVVDHTVQYGEDIECRGAEQD 299
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A448YVL8_9STRA (GPN-loop GTPase 3 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVL8_9STRA) HSP 1 Score: 234 bits (596), Expect = 1.980e-72 Identity = 131/280 (46.79%), Postives = 178/280 (63.57%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKEL-QPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQ 832
DLIS+E+ MEEL+LGPNGGLVYCMEYLL N+DWL+D LD+FD++EY++ DCPGQ+ELY+H+P+MRN++D+++ W Y + AVFLLDATF+ D +KF+SG+LLSLSAM+ LELPH NVLTKCDL EVE LD +A + Q +Q + T PF A + +G E+ + + RL+R R RLT++IS +LDDY+M++F+PL+IRDEE I +L D +QYGEDLE ++
Sbjct: 61 DLISVEEVMEELDLGPNGGLVYCMEYLLSNLDWLQDHLDSFDDDEYLILDCPGQLELYTHIPLMRNLIDRMRMWGYAHTMAAVFLLDATFVGDTSKFLSGSLLSLSAMIALELPHTNVLTKCDLLTDEEVEDILDHGSATQM-WDREQDRQSLIMPT-PFS---------------------------------VTAASSNQGDEVTEEQRRLERRRRHRQ---------RLTDSISQLLDDYSMISFIPLNIRDEESIDALLTCVDGSIQYGEDLEVRE 296
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Match: A0A7S2PBB3_9STRA (GPN-loop GTPase 3 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PBB3_9STRA) HSP 1 Score: 232 bits (592), Expect = 4.860e-72 Identity = 124/277 (44.77%), Postives = 178/277 (64.26%), Query Frame = 2
Query: 2 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYSHVPVMRNILDQLKSWNY--NVCAVFLLDATFITDPAKFISGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAA-LISMHYPQAQQGVHFGTAPFDKRRDGETPEHKVEAIAQEELADSDGGTPEAEKGAAAGLAKRGKELQPRGRLDRIGRPDSRNQKLPKLARLTEAISNVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLE 823
+LIS++D MEEL+LGPNG LVYCMEYLL+NMDWL+D LD++D++EY++ DCPGQ+ELY+H+PVM I+DQ++ W Y ++ +VF++DATF+TDPAKFISG+LL+LSAM+ ++LPH+NVL+KCDL + + ++R L+ E+A L M + + P++ H V A A + +A+ A Q+ K +RLTE+I ++LDDY+MV F+PL+I DE+ I VL D+ QYGEDLE
Sbjct: 37 ELISVDDVMEELQLGPNGSLVYCMEYLLENMDWLQDHLDSYDDDEYLIIDCPGQIELYTHIPVMNKIIDQMRMWGYGESMVSVFVVDATFVTDPAKFISGSLLALSAMIAMQLPHVNVLSKCDLVEEASMDRVLEMESAIQLWDMLGDHSSESASL--QPYN---------HLVPATNNSTTAAATNNDNKAQISA--------------------------QQRARKWSRLTESICSLLDDYSMVGFVPLNINDEDSITHVLATVDHATQYGEDLE 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13962.2759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13962.2759.1 >prot_H-elongata_contig13962.2759.1 ID=prot_H-elongata_contig13962.2759.1|Name=mRNA_H-elongata_contig13962.2759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp MEELELGPNGGLVYCMEYLLDNMDWLKDELDNFDEEEYIVFDCPGQVELYback to top mRNA from alignment at H-elongata_contig13962:4851..7965- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13962.2759.1 ID=mRNA_H-elongata_contig13962.2759.1|Name=mRNA_H-elongata_contig13962.2759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3115bp|location=Sequence derived from alignment at H-elongata_contig13962:4851..7965- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13962:4851..7965- >mRNA_H-elongata_contig13962.2759.1 ID=mRNA_H-elongata_contig13962.2759.1|Name=mRNA_H-elongata_contig13962.2759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig13962:4851..7965- (Himanthalia elongata Himel1 dioecious)back to top |