mRNA_H-elongata_contig1392.2731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1392.2731.1
Unique NamemRNA_H-elongata_contig1392.2731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1392.2731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1392contigH-elongata_contig1392:13237..14284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1392.2731.1prot_H-elongata_contig1392.2731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1392 13240..14284 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.16543-UTR-H-elongata_contig1392:13236..132391622929826.16543-UTR-H-elongata_contig1392:13236..13239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1392 13237..13239 -
1691679174.0280194-UTR-H-elongata_contig1392:13236..132391691679174.0280194-UTR-H-elongata_contig1392:13236..13239Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1392 13237..13239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.1893504-CDS-H-elongata_contig1392:13239..132641622929826.1893504-CDS-H-elongata_contig1392:13239..13264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1392 13240..13264 -
1691679174.0371609-CDS-H-elongata_contig1392:13239..132641691679174.0371609-CDS-H-elongata_contig1392:13239..13264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1392 13240..13264 -
1622929826.2012558-CDS-H-elongata_contig1392:14069..142841622929826.2012558-CDS-H-elongata_contig1392:14069..14284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1392 14070..14284 -
1691679174.0463314-CDS-H-elongata_contig1392:14069..142841691679174.0463314-CDS-H-elongata_contig1392:14069..14284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1392 14070..14284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1392.2731.1

>prot_H-elongata_contig1392.2731.1 ID=prot_H-elongata_contig1392.2731.1|Name=mRNA_H-elongata_contig1392.2731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MCLRTRTTYRNKIPQGALHLPETLSLLKQLRLHLLPLLHRRLVQLRGNTS
VTEQLRPSIIIAQRQRCFGARSISLDPFG*
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mRNA from alignment at H-elongata_contig1392:13237..14284-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1392.2731.1 ID=mRNA_H-elongata_contig1392.2731.1|Name=mRNA_H-elongata_contig1392.2731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig1392:13237..14284- (Himanthalia elongata Himel1 dioecious)
ATGTGCCTTCGAACACGTACAACTTACAGGAATAAAATTCCGCAGGGGGC
CTTACACCTGCCGGAAACATTGAGCCTTCTGAAACAGTTGCGTCTACATC
TACTACCCCTGCTACATCGGAGGCTAGTCCAACTGAGGGGCAACACGAGC
GTCACGGAGCAACTTCGACCATCGATTATAATAGCGCAAAGGCAGCGGTG
TTTTGGTGCTCGCAGGTGAAAATTTCATGCCCAATCGTTTCGGCACGACT
AGATCTGCGTATCGTATGTATATTGAAAAGGCCCAATCAACCGCCTGTAT
TATATTGAATTTTTCCTCTGCGCACTACATGTGCGATGTCTGTATTGTGT
AGGTACCAGCCTGCATCATCCAGGCGAAGCTCGTCCGCACATACCCACGC
ATGTCTAGATTAACGCTGTACACGGGAGGGAGTAGATCGGTTGGTGGCAA
CGGAAAGCTTTACGTGAATATTCGTTGAGCGTAATCGCGCCCCGCCGACA
TGTCTCGAAGATTCTTTAATATAATGATACAAACCAGACGGTGGTTCCTC
GGGAACATCGCAGGTGCTGGATTGTCCTGGCATCGATCGAGTACTTCTAT
ATTTTCTTTGAACCCGTCAATGAGCCCTACACCTCCCAAGTCTCCTTTCC
GCACAGTCTTCTAAGGGAGCCTTCCGAACGAAACGGTTTCCCCTCGAACC
TAGAGCCTAATCTCTCATCTAGGAGAAAAATGCAGCCTATTTTGGCTCGA
GTTTTTTTAATACTACGCTTTAATGTGCGGAGAAAATTATTGGAAGATAT
ATCTCTGACCCCACAATATTTGATAATTAAATCACGTCGATAGGTCGGAG
TACAGGATGGGAGATGGTTGTGCTTTTCCTGAAGAGGGAGGAGGAAACGG
GTGGGGTAGTTTTCGGGTAGTCTTTTGACAACAATTCCATGTAGAACCTA
ATGACCAATCACCTAATTTTACTCTTCGTCTGAGCTATAACGCCCTACCC
GCCCCCCCGTTTTTCGCCAGTATATCCTTAGATCCCTTTGGCTAGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig1392:13237..14284-

>mRNA_H-elongata_contig1392.2731.1 ID=mRNA_H-elongata_contig1392.2731.1|Name=mRNA_H-elongata_contig1392.2731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig1392:13237..14284- (Himanthalia elongata Himel1 dioecious)
ATGTGCCTTCGAACACGTACAACTTACAGGAATAAAATTCCGCAGGGGGC
CTTACACCTGCCGGAAACATTGAGCCTTCTGAAACAGTTGCGTCTACATC
TACTACCCCTGCTACATCGGAGGCTAGTCCAACTGAGGGGCAACACGAGC
GTCACGGAGCAACTTCGACCATCGATTATAATAGCGCAAAGGCAGCGGTG
TTTTGGTGCTCGCAGATGTGCCTTCGAACACGTACAACTTACAGGAATAA
AATTCCGCAGGGGGCCTTACACCTGCCGGAAACATTGAGCCTTCTGAAAC
AGTTGCGTCTACATCTACTACCCCTGCTACATCGGAGGCTAGTCCAACTG
AGGGGCAACACGAGCGTCACGGAGCAACTTCGACCATCGATTATAATAGC
GCAAAGGCAGCGGTGTTTTGGTGCTCGCAGTATATCCTTAGATCCCTTTG
GCTAGTATATCCTTAGATCCCTTTGGCTAG
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