mRNA_H-elongata_contig139169.2729.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139169.2729.1
Unique NamemRNA_H-elongata_contig139169.2729.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139169.2729.1 vs. uniprot
Match: D8LUA2_ECTSI (Tyrosine Decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA2_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.620e-9
Identity = 25/47 (53.19%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 RISSSGIAFFSSTKLKGQTCLQICLGSTLTNSRHVQELWNAISETAN 141
            RI +SG+AFFSSTKL+G+TCL++ +G   T  RH+++LW A+  TA+
Sbjct:  479 RIVASGLAFFSSTKLEGRTCLRVSVGGLATEMRHIRDLWGALGRTAD 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139169.2729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUA2_ECTSI6.620e-953.19Tyrosine Decarboxylase n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139169contigH-elongata_contig139169:217..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog2880.D8LUA2
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
EggNOG free text desc.decarboxylase
EggNOG OGsCOG0076@1,KOG0628@2759
EC4.1.1.105,4.1.1.28
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929826.0527155-CDS-H-elongata_contig139169:216..3781622929826.0527155-CDS-H-elongata_contig139169:216..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139169 217..378 +
1691679173.9894505-CDS-H-elongata_contig139169:216..3781691679173.9894505-CDS-H-elongata_contig139169:216..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139169 217..378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139169.2729.1prot_H-elongata_contig139169.2729.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139169 217..378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139169.2729.1

>prot_H-elongata_contig139169.2729.1 ID=prot_H-elongata_contig139169.2729.1|Name=mRNA_H-elongata_contig139169.2729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RISSSGIAFFSSTKLKGQTCLQICLGSTLTNSRHVQELWNAISETANDLV
EAT*
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mRNA from alignment at H-elongata_contig139169:217..378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139169.2729.1 ID=mRNA_H-elongata_contig139169.2729.1|Name=mRNA_H-elongata_contig139169.2729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig139169:217..378+ (Himanthalia elongata Himel1 dioecious)
CGGATTTCATCGTCGGGAATCGCTTTTTTCTCGTCCACCAAGCTCAAGGG
ACAGACATGCCTTCAGATATGCCTGGGATCTACGCTCACCAATTCCCGTC
ACGTCCAGGAGCTGTGGAACGCAATTAGTGAAACGGCCAATGATTTGGTC
GAAGCTACCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig139169:217..378+

>mRNA_H-elongata_contig139169.2729.1 ID=mRNA_H-elongata_contig139169.2729.1|Name=mRNA_H-elongata_contig139169.2729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig139169:217..378+ (Himanthalia elongata Himel1 dioecious)
CGGATTTCATCGTCGGGAATCGCTTTTTTCTCGTCCACCAAGCTCAAGGG
ACAGACATGCCTTCAGATATGCCTGGGATCTACGCTCACCAATTCCCGTC
ACGTCCAGGAGCTGTGGAACGCAATTAGTGAAACGGCCAATGATTTGGTC
GAAGCTACCTGACGGATTTCATCGTCGGGAATCGCTTTTTTCTCGTCCAC
CAAGCTCAAGGGACAGACATGCCTTCAGATATGCCTGGGATCTACGCTCA
CCAATTCCCGTCACGTCCAGGAGCTGTGGAACGCAATTAGTGAAACGGCC
AATGATTTGGTCGAAGCTACCTGA
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