mRNA_H-elongata_contig139161.2728.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139161.2728.1
Unique NamemRNA_H-elongata_contig139161.2728.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.860e-36
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 RGKLIITSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIREEERHRQPE 240
            RGKLI+ S   D NKYRDRADERRKG NPDYADKLNQMA+MDAETTKYLGGD+EHTHLVKGLDYALLVKIREEER +Q E
Sbjct:   92 RGKLIVASGVNDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIE 171          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A4D9CVF8_9STRA (RED_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.510e-20
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   16 ITSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
            +   A++   YRDRA+ERRKG NPDY D++ ++  MDAETTKYLGGD++HTHLVKGLDYALL ++R
Sbjct:  140 VAGGASEEGGYRDRAEERRKGVNPDYEDEIARLVHMDAETTKYLGGDVKHTHLVKGLDYALLQRVR 205          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7S3XKR5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKR5_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   46 YRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
            YRDRA ERR+G+NPDY D + +M  MD E +KYLGGD++HTHLV+GLDYALL K+R+E
Sbjct:  114 YRDRAAERRQGYNPDYDDDIEKMVQMDVEKSKYLGGDVKHTHLVRGLDYALLNKVRQE 171          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7S2W4J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4J1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.010e-17
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   43 KYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
            KYRDRA+ERRK  NPDY   + ++  +D E +KYLGGD+EHTHLVKGLDYALL K+R+E
Sbjct:   71 KYRDRANERRKEINPDYKTDVQKLLEVDIEKSKYLGGDVEHTHLVKGLDYALLSKVRDE 129          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A812YWK0_SYMMI (SMU2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YWK0_SYMMI)

HSP 1 Score: 80.9 bits (198), Expect = 3.290e-16
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   19 TSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
            TS  AD   YRDRA ERR   NPDY  +L  +A +D E TKYLGGD EHTHLVKGLDYALL K+R
Sbjct:   66 TSKKAD--NYRDRAQERRNDANPDYDAQLEAVANLDVEQTKYLGGDEEHTHLVKGLDYALLRKVR 128          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A397GNT5_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GNT5_9GLOM)

HSP 1 Score: 81.3 bits (199), Expect = 3.630e-16
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 RGKLIITSDAADL-NKYRDRADERRKGHNPDYADKLNQMATMDAET---------TKYLGGDIEHTHLVKGLDYALLVKIREE 219
            R + + TSDA    NKYRDRA ERRKG NPDY +    +  +++ET         +KYLGGD EHTHLVKGLDYALL K+R E
Sbjct:   74 RFRKLETSDAETTDNKYRDRAAERRKGANPDYQETEQILKALNSETLEAKLIYEQSKYLGGDTEHTHLVKGLDYALLAKVRNE 156          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7R9YBH1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBH1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 9.340e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   46 YRDRADERRKGHNPDYADKLNQMAT--MDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
            YRDRA ERR G NPDYA +L  +A   +DA  TKYLGGD+EHTHLVKGLD+ALL K+R
Sbjct:  113 YRDRAAERRAGLNPDYAGELEDLAAKKVDASMTKYLGGDVEHTHLVKGLDFALLHKVR 170          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A7R9Z3L9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z3L9_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 1.060e-15
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   43 KYRDRADERRKGHNPDYADKLNQMAT----------MDAETTKYLGGDIEHTHLVKGLDYALLVKIR 213
            KYRDRA+ERR+G NPDYA   NQ+A           +  E TKYLGGDIEHTHLVKGLD+ALL K R
Sbjct:   72 KYRDRAEERRRGINPDYAS-ANQLAAALPGDVDMNALSVEETKYLGGDIEHTHLVKGLDFALLQKER 137          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A1Y1YJX7_9FUNG (RED_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YJX7_9FUNG)

HSP 1 Score: 78.2 bits (191), Expect = 4.300e-15
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   34 DLNKYRDRADERRKGHNPDYADKLNQMATMDA--------ETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
            D  KYRDRA ERR+G NPDY +    +AT+          E +KYLGGD EHTHLVKGLDYALL K+R E
Sbjct:   91 DSEKYRDRARERRRGENPDYVETERILATLQTPEDPNLAYEKSKYLGGDAEHTHLVKGLDYALLEKVRRE 160          
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Match: A0A397VSA2_9GLOM (RED-like protein N-terminal region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VSA2_9GLOM)

HSP 1 Score: 78.2 bits (191), Expect = 4.400e-15
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   43 KYRDRADERRKGHNPDYADK------LNQMATMDA----ETTKYLGGDIEHTHLVKGLDYALLVKIREE 219
            KYRDRA ERRKG NPDY +       LN   T++A    E +KYLGGD EHTHLVKGLDYALL K+R E
Sbjct:   84 KYRDRAAERRKGANPDYQETEQILKALNNSETLEAKMIYEQSKYLGGDTEHTHLVKGLDYALLAKVRNE 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139161.2728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4J3_9PHAE4.860e-3685.00RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CVF8_9STRA5.510e-2063.64RED_N domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S3XKR5_HETAK1.350e-1867.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2W4J1_9STRA5.010e-1766.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812YWK0_SYMMI3.290e-1666.15SMU2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A397GNT5_9GLOM3.630e-1655.42Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A7R9YBH1_9STRA9.340e-1668.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9Z3L9_9CHLO1.060e-1562.69Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A1Y1YJX7_9FUNG4.300e-1558.57RED_N domain-containing protein n=1 Tax=Basidiobol... [more]
A0A397VSA2_9GLOM4.400e-1562.32RED-like protein N-terminal region-domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139161contigH-elongata_contig139161:1255..1494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.8
Seed ortholog evalue2.6e-12
Seed eggNOG ortholog78898.MVEG_05526T0
EggNOG free text desc.RED-like protein C-terminal region
EggNOG OGs1GTJ5@112252,38GR4@33154,3Q174@4751,KOG2498@1,KOG2498@2759
COG Functional cat.T
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRED-like, N-terminal
Ec32 orthologEc-04_002420.1
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.986626-CDS-H-elongata_contig139161:1254..14941622929825.986626-CDS-H-elongata_contig139161:1254..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139161 1255..1494 +
1691679173.9774406-CDS-H-elongata_contig139161:1254..14941691679173.9774406-CDS-H-elongata_contig139161:1254..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139161 1255..1494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139161.2728.1prot_H-elongata_contig139161.2728.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139161 1255..1494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139161.2728.1

>prot_H-elongata_contig139161.2728.1 ID=prot_H-elongata_contig139161.2728.1|Name=mRNA_H-elongata_contig139161.2728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RGKLIITSDAADLNKYRDRADERRKGHNPDYADKLNQMATMDAETTKYLG
GDIEHTHLVKGLDYALLVKIREEERHRQPE
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mRNA from alignment at H-elongata_contig139161:1255..1494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139161.2728.1 ID=mRNA_H-elongata_contig139161.2728.1|Name=mRNA_H-elongata_contig139161.2728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig139161:1255..1494+ (Himanthalia elongata Himel1 dioecious)
CGGGGAAAGCTCATCATCACCTCCGACGCTGCGGATTTAAACAAATACCG CGACCGCGCGGATGAGCGCCGCAAGGGCCACAATCCTGACTATGCGGACA AGTTGAACCAGATGGCAACAATGGACGCGGAGACGACCAAATACCTCGGA GGTGACATCGAACACACCCATTTGGTAAAGGGTCTGGACTACGCCCTCCT GGTGAAGATCAGGGAGGAGGAAAGACATCGGCAGCCTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig139161:1255..1494+

>mRNA_H-elongata_contig139161.2728.1 ID=mRNA_H-elongata_contig139161.2728.1|Name=mRNA_H-elongata_contig139161.2728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig139161:1255..1494+ (Himanthalia elongata Himel1 dioecious)
CGGGGAAAGCTCATCATCACCTCCGACGCTGCGGATTTAAACAAATACCG
CGACCGCGCGGATGAGCGCCGCAAGGGCCACAATCCTGACTATGCGGACA
AGTTGAACCAGATGGCAACAATGGACGCGGAGACGACCAAATACCTCGGA
GGTGACATCGAACACACCCATTTGGTAAAGGGTCTGGACTACGCCCTCCT
GGTGAAGATCAGGGAGGAGGAAAGACATCGGCAGCCTGAGCGGGGAAAGC
TCATCATCACCTCCGACGCTGCGGATTTAAACAAATACCGCGACCGCGCG
GATGAGCGCCGCAAGGGCCACAATCCTGACTATGCGGACAAGTTGAACCA
GATGGCAACAATGGACGCGGAGACGACCAAATACCTCGGAGGTGACATCG
AACACACCCATTTGGTAAAGGGTCTGGACTACGCCCTCCTGGTGAAGATC
AGGGAGGAGGAAAGACATCGGCAGCCTGAG
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