mRNA_H-elongata_contig139160.2727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139160.2727.1
Unique NamemRNA_H-elongata_contig139160.2727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 177 bits (449), Expect = 8.190e-47
Identity = 91/253 (35.97%), Postives = 152/253 (60.08%), Query Frame = 1
Query:   46 ALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVE 804
            A+   +  +W+KA E E+       V+++V RP+D+  +G+K V K K G DG+VEKYK RLVAQGF QVE + Y E ++P   + SIR+LLA AA  D E+   D + AFL  +++E++Y+++P  ++    AV RL K  YGL QA R W     +++  +GF + + D CVF K +D    + + V+V+D +  +     + +  ++LG  F++ D+G+  + +   +TRNR+ R +++ Q  Y+E ++E
Sbjct: 1001 AMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPI-IAVYVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILE 1252          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 169 bits (429), Expect = 3.810e-44
Identity = 99/270 (36.67%), Postives = 151/270 (55.93%), Query Frame = 1
Query:   10 TLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGA--VGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV---DGEAEVAVV-VHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
            T DI EPRN  +A  +     W+KA + E   +++N  ++ V  P DK  VG++ V K K   DG VEK+K RLVAQG+ Q E + Y E +SP     SIR LLA A   D E+   D   AFL  D+ +++Y++ PE YR       V +L K  YGL Q+ RCWN+T  S + + G++Q   D C++ K V   +G+    ++ +HV+DIL  + D   ++     +G  F ++D+G+  + +G  I R+R +R L I Q  Y+E ++
Sbjct:  827 TADINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVRTAFLQGDLTDEIYMKQPEGYRSKENPDHVCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVL 1096          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT)

HSP 1 Score: 166 bits (419), Expect = 7.710e-43
Identity = 91/267 (34.08%), Postives = 155/267 (58.05%), Query Frame = 1
Query:   10 TLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEY--RKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV-DGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
            T DI EP N  +A       +W++A + E   +++N  ++ V+ PK K  VG+K V K K  ++G V++YK RLVAQG+ Q E V Y+E +SP     +IR LLA + AK+ E+   D + AFL  +++E +Y+  P+ Y  ++    V +L K  YGL Q+ RCWNN   + + + G++Q ++DPC++ K + D    + + +HV+DIL  + D   +      +G  F + DMG+ ++ +G  I R+R+  ++ I Q  Y++ ++
Sbjct:  717 TADINEPINMDEAFSGEHSAEWKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEE-IYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSIHVDDILLFSNDSCMLSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMMISQSTYLQGIL 982          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 164 bits (414), Expect = 2.290e-42
Identity = 91/261 (34.87%), Postives = 149/261 (57.09%), Query Frame = 1
Query:   19 IQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
            + +P++  +A+   + + W+ A   E+   V   +Y +V RP+D+  VG K V + K G DG++EKYK R+VA+GF QVE V YT+ ++P    ASIR LLA AA  D E+   D + AFL  ++DE++++  P  ++     V +L K  YGL QA R W     ++  ++GF +   D  VF K  DG   + V V+++D+L        ++   A+LG  +++ D+G+AR  +   I R+R  R +++ Q  YVES++
Sbjct:  279 LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDGVLLI-VAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESIL 538          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 162 bits (409), Expect = 1.490e-41
Identity = 92/269 (34.20%), Postives = 148/269 (55.02%), Query Frame = 1
Query:    1 MHATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAA-IGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVE 804
            +H T  + EPR   +A  + EW +W++A + E+  +     Y     P  +  +G + V + K   DG++ +YK RLVAQGF Q   + Y E ++P   T S+R+LLA AA ++ EL  FD   A+L  D+DE++Y+  P  Y +    + RL K  YGL QAG  WN+     + A +GF++  +DPCV+ K    +    V +HV+D+ A A     MD   + L + + + D+G  R  +G  I+R+RK R L I Q  Y++++++
Sbjct:    6 LHGTETVHEPRTLSEAQAAPEWPEWKRAMDDEIAQLRKLGTYAPADLPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGSSPIVRLRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKK-SPKGLTIVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLD 273          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A0J7KG03_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KG03_LASNI)

HSP 1 Score: 160 bits (406), Expect = 3.690e-41
Identity = 96/260 (36.92%), Postives = 150/260 (57.69%), Query Frame = 1
Query:   16 DIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDS-YGLVQA-GRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYV 789
            D+ +P N  +AL SS+   W KA E E   +  N  +  V  PKDK A+ TK V K K    G++++YK RLV +G  Q+E + Y E YSP     SI+ L A A   D  +   D   A+L  DI++++Y++ PEE  K  G  G++ +   Y   +A GR WN  F   +  +GF++ + D CV+ K  D ++ V + V+V+D+L  A ++        +L QTF++KD+G+A+Y +G +ITR+RKAR++ +DQ  Y+
Sbjct:  625 DVTDPENLEEALNSSDSVTWIKAMEEERDFLAKNGTWTLVDLPKDKRALDTKWVFKTKRDVTGQIKRYKARLVVRGCSQIEGIDYNETYSPVVRYTSIQFLCALAVKHDLYMDQMDVTAAYLHGDIEQEIYVKPPEELVKS-GEKGKVWRPKVYIRTEASGRAWNKKFHDTLTDMGFKRSQADSCVYFKR-DNKSLVIIAVYVDDLLILASNEKVKTSLKKKLSQTFDMKDLGEAKYLLGMNITRDRKARKIWLDQSTYI 882          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI)

HSP 1 Score: 159 bits (403), Expect = 1.080e-40
Identity = 89/256 (34.77%), Postives = 153/256 (59.77%), Query Frame = 1
Query:   13 LDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKF-LGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQ 777
            L ++EP++ ++A+   + + W+++ + EM  +++N  ++ V +P+    V  K V K K    G +E++K RLVA+GF Q + V + E Y+P     ++R LL   AA+D EL   D + AFL  +++E++Y++ P+ Y +     V RL K  YGL QA R W+    +++  I F   ++D  +F  V+DGE  V VVV V+DIL  AK +  + +  A L + F+++D+G A Y++G  +TR+R+AR +K+ Q
Sbjct:  556 LGLKEPQSYQEAVGGEQSEIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQ 810          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.250e-40
Identity = 91/276 (32.97%), Postives = 148/276 (53.62%), Query Frame = 1
Query:    1 MHATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAVGRLNKDS---------YGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
            M AT ++  P+   +A    + D+W+KA   E+  ++ N  +K V +P  +  +G + V   K  + G+V +YK RLVA+G+ Q   + Y E YSP     S+R +LA   A+  E+   D + AFL  +++E++Y+E+PE  R+ L       +D          YGL QA R WN T    + + GFE    DPCV+ +  +GE E  V ++V+D+L  ++ KA +    A + + F +KD+G AR+ +G  I  + + R L I Q  Y ES++
Sbjct:   59 MAATEEV--PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESII 331          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 159 bits (401), Expect = 2.080e-40
Identity = 90/270 (33.33%), Postives = 145/270 (53.70%), Query Frame = 1
Query:    7 ATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEY--RKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV---DGEAEVAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
            A +D +EP    +AL S   + W+ A + E   +++N  +K V  P DK  VG+K V K K G DGK+++ K RLVAQG+ Q   + Y + ++P     SIR +LA     D EL   D + AFL  D++ED++++ PE +  R       +L K  YGL Q+ RCWN      +   GF +   DPC++ K +   D    + V V+V+D+L    +   +     +LG+ F ++D  +  + +G  + R+RK R L IDQ+ ++ S++
Sbjct:  769 AIVDEEEPTTIEEALSSPNAELWKDAIQNEYDSLIENETWKLVEMPPDKNLVGSKWVFKHKRGADGKIQRCKARLVAQGYSQKSGIDYNDVFAPVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGFINRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVL 1038          
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 157 bits (398), Expect = 5.260e-40
Identity = 93/270 (34.44%), Postives = 155/270 (57.41%), Query Frame = 1
Query:   10 TLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKDKLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEY--RKFLGAVGRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVV---DGEAE-VAVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMV 801
            T DI EP + ++A       +W++A + E   ++ N  ++ V  PK K  VG++ V K K   DG VE++K RLVAQG+ Q + + Y E +SP     SIR LLA A   D E+   D + AFL  ++DE ++++ PE Y  ++    V +LN+  YGL QA RCWN+   + + + G+ +   DPC++ K +   +G+ + V + ++V+DIL  + +   + +    L + F ++DMG+  Y +G  + RNR+AR L I+Q  Y+E ++
Sbjct:  808 TADINEPVHIQEAWTGDHSVEWKEATDSEYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVL 1077          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139160.2727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK8.190e-4735.97Integrase catalytic domain-containing protein (Fra... [more]
A0A7D9IUY0_PARCT3.810e-4436.67Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9HXK4_PARCT7.710e-4334.08Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1C7MSU6_GRIFR2.290e-4234.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V3W8_TRAPU1.490e-4134.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KG03_LASNI3.690e-4136.92Retrovirus-related pol polyprotein from transposon... [more]
A0A1Y1IVX6_KLENI1.080e-4034.77Integrase catalytic domain-containing protein (Fra... [more]
A0A6A3Q908_9STRA1.250e-4032.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A7M6DPI8_9CNID2.080e-4033.33Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A6S7HNY1_PARCT5.260e-4034.44Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139160contigH-elongata_contig139160:2..805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score162.9
Seed ortholog evalue2e-37
Seed eggNOG ortholog5111.M1VW57
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size804
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.8989844-CDS-H-elongata_contig139160:1..8051622929825.8989844-CDS-H-elongata_contig139160:1..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139160 2..805 -
1691679173.9656062-CDS-H-elongata_contig139160:1..8051691679173.9656062-CDS-H-elongata_contig139160:1..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139160 2..805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139160.2727.1prot_H-elongata_contig139160.2727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139160 2..805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139160.2727.1

>prot_H-elongata_contig139160.2727.1 ID=prot_H-elongata_contig139160.2727.1|Name=mRNA_H-elongata_contig139160.2727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
MHATLDIQEPRNRRQALESSEWDDWQKAEEIEMCGMVDNCVYKQVARPKD
KLAVGTKMVDKRKVGQDGKVEKYKCRLVAQGFWQVESVHYTEKYSPTPST
ASIRMLLATAAAKDGELRHFDAEQAFLTVDIDEDLYIEIPEEYRKFLGAV
GRLNKDSYGLVQAGRCWNNTFCSDMAAIGFEQGKTDPCVFRKVVDGEAEV
AVVVHVEDILAHAKDKATMDRFAAELGQTFNLKDMGDARYYMGCHITRNR
KARELKIDQHLYVESMVE
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mRNA from alignment at H-elongata_contig139160:2..805-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139160.2727.1 ID=mRNA_H-elongata_contig139160.2727.1|Name=mRNA_H-elongata_contig139160.2727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at H-elongata_contig139160:2..805- (Himanthalia elongata Himel1 dioecious)
ATGCACGCGACGCTGGATATACAGGAACCGAGGAATCGGCGACAGGCGTT GGAATCGTCGGAATGGGACGATTGGCAGAAAGCAGAGGAAATAGAGATGT GTGGCATGGTGGATAACTGCGTTTATAAGCAGGTGGCTCGACCGAAGGAT AAGCTTGCGGTTGGCACGAAAATGGTCGACAAACGAAAAGTCGGACAGGA CGGCAAGGTCGAGAAATACAAGTGCCGGCTTGTGGCTCAAGGGTTCTGGC AGGTAGAAAGTGTGCACTATACGGAGAAATACTCACCCACGCCATCGACC GCATCAATCCGGATGCTTTTGGCCACAGCAGCTGCCAAGGACGGTGAGCT GCGCCATTTCGACGCGGAGCAGGCATTCCTGACAGTGGACATCGATGAGG ACTTGTACATTGAGATCCCCGAGGAATACCGGAAGTTTCTGGGGGCAGTG GGACGACTGAACAAGGACAGTTACGGACTCGTACAAGCGGGGAGGTGCTG GAACAACACGTTTTGCAGTGATATGGCAGCGATTGGATTTGAGCAGGGAA AGACGGATCCGTGCGTGTTTCGTAAGGTCGTTGACGGCGAGGCAGAAGTG GCGGTGGTCGTTCACGTGGAAGATATTCTTGCTCACGCCAAAGACAAAGC GACTATGGATAGATTCGCGGCTGAGCTTGGACAAACGTTTAATTTGAAAG ACATGGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGGAACCGC AAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGT GGAA
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Coding sequence (CDS) from alignment at H-elongata_contig139160:2..805-

>mRNA_H-elongata_contig139160.2727.1 ID=mRNA_H-elongata_contig139160.2727.1|Name=mRNA_H-elongata_contig139160.2727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig139160:2..805- (Himanthalia elongata Himel1 dioecious)
ATGCACGCGACGCTGGATATACAGGAACCGAGGAATCGGCGACAGGCGTT
GGAATCGTCGGAATGGGACGATTGGCAGAAAGCAGAGGAAATAGAGATGT
GTGGCATGGTGGATAACTGCGTTTATAAGCAGGTGGCTCGACCGAAGGAT
AAGCTTGCGGTTGGCACGAAAATGGTCGACAAACGAAAAGTCGGACAGGA
CGGCAAGGTCGAGAAATACAAGTGCCGGCTTGTGGCTCAAGGGTTCTGGC
AGGTAGAAAGTGTGCACTATACGGAGAAATACTCACCCACGCCATCGACC
GCATCAATCCGGATGCTTTTGGCCACAGCAGCTGCCAAGGACGGTGAGCT
GCGCCATTTCGACGCGGAGCAGGCATTCCTGACAGTGGACATCGATGAGG
ACTTGTACATTGAGATCCCCGAGGAATACCGGAAGTTTCTGGGGGCAGTG
GGACGACTGAACAAGGACAGTTACGGACTCGTACAAGCGGGGAGGTGCTG
GAACAACACGTTTTGCAGTGATATGGCAGCGATTGGATTTGAGCAGGGAA
AGACGGATCCGTGCGTGTTTCGTAAGGTCGTTGACGGCGAGGCAGAAGTG
GCGGTGGTCGTTCACGTGGAAGATATTCTTGCTCACGCCAAAGACAAAGC
GACTATGGATAGATTCGCGGCTGAGCTTGGACAAACGTTTAATTTGAAAG
ACATGGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGGAACCGC
AAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGT
GGAAATGCACGCGACGCTGGATATACAGGAACCGAGGAATCGGCGACAGG
CGTTGGAATCGTCGGAATGGGACGATTGGCAGAAAGCAGAGGAAATAGAG
ATGTGTGGCATGGTGGATAACTGCGTTTATAAGCAGGTGGCTCGACCGAA
GGATAAGCTTGCGGTTGGCACGAAAATGGTCGACAAACGAAAAGTCGGAC
AGGACGGCAAGGTCGAGAAATACAAGTGCCGGCTTGTGGCTCAAGGGTTC
TGGCAGGTAGAAAGTGTGCACTATACGGAGAAATACTCACCCACGCCATC
GACCGCATCAATCCGGATGCTTTTGGCCACAGCAGCTGCCAAGGACGGTG
AGCTGCGCCATTTCGACGCGGAGCAGGCATTCCTGACAGTGGACATCGAT
GAGGACTTGTACATTGAGATCCCCGAGGAATACCGGAAGTTTCTGGGGGC
AGTGGGACGACTGAACAAGGACAGTTACGGACTCGTACAAGCGGGGAGGT
GCTGGAACAACACGTTTTGCAGTGATATGGCAGCGATTGGATTTGAGCAG
GGAAAGACGGATCCGTGCGTGTTTCGTAAGGTCGTTGACGGCGAGGCAGA
AGTGGCGGTGGTCGTTCACGTGGAAGATATTCTTGCTCACGCCAAAGACA
AAGCGACTATGGATAGATTCGCGGCTGAGCTTGGACAAACGTTTAATTTG
AAAGACATGGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGGAA
CCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGA
TGGTGGAA
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