mRNA_H-elongata_contig13914.2723.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13914.2723.1
Unique NamemRNA_H-elongata_contig13914.2723.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13914.2723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13914contigH-elongata_contig13914:5788..6195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.390545-CDS-H-elongata_contig13914:5787..61951622929825.390545-CDS-H-elongata_contig13914:5787..6195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13914 5788..6195 -
1691679173.8187854-CDS-H-elongata_contig13914:5787..61951691679173.8187854-CDS-H-elongata_contig13914:5787..6195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13914 5788..6195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13914.2723.1prot_H-elongata_contig13914.2723.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13914 5788..6195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13914.2723.1

>prot_H-elongata_contig13914.2723.1 ID=prot_H-elongata_contig13914.2723.1|Name=mRNA_H-elongata_contig13914.2723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MEPGGDPFKFMMEVDRLAADLNRLGDESVTEKRKCVITVSGLPTDYEMEC
RMLENNPVGLNRAEIERAVWNQYNRLFRQQENLKAMSASKGHITVNPGTG
VDRIHHPRFNRKCFNCGKGGHHARDCRMSEESGATD
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mRNA from alignment at H-elongata_contig13914:5788..6195-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13914.2723.1 ID=mRNA_H-elongata_contig13914.2723.1|Name=mRNA_H-elongata_contig13914.2723.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig13914:5788..6195- (Himanthalia elongata Himel1 dioecious)
ATGGAACCAGGTGGGGATCCATTCAAATTTATGATGGAAGTTGACAGGCT
AGCAGCTGATCTCAACCGATTGGGTGACGAATCCGTGACTGAAAAAAGAA
AATGCGTAATTACCGTATCTGGCCTCCCTACGGATTACGAGATGGAGTGC
CGCATGTTGGAAAACAACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCG
TGCCGTATGGAATCAGTACAACAGACTTTTCAGACAACAAGAGAATTTGA
AGGCTATGTCAGCATCGAAGGGCCACATCACGGTGAATCCCGGAACGGGG
GTGGACAGAATACACCACCCCAGATTTAACCGAAAGTGCTTCAATTGCGG
AAAGGGAGGCCACCACGCTCGAGACTGTAGGATGAGTGAGGAATCAGGGG
CCACCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig13914:5788..6195-

>mRNA_H-elongata_contig13914.2723.1 ID=mRNA_H-elongata_contig13914.2723.1|Name=mRNA_H-elongata_contig13914.2723.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig13914:5788..6195- (Himanthalia elongata Himel1 dioecious)
ATGGAACCAGGTGGGGATCCATTCAAATTTATGATGGAAGTTGACAGGCT
AGCAGCTGATCTCAACCGATTGGGTGACGAATCCGTGACTGAAAAAAGAA
AATGCGTAATTACCGTATCTGGCCTCCCTACGGATTACGAGATGGAGTGC
CGCATGTTGGAAAACAACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCG
TGCCGTATGGAATCAGTACAACAGACTTTTCAGACAACAAGAGAATTTGA
AGGCTATGTCAGCATCGAAGGGCCACATCACGGTGAATCCCGGAACGGGG
GTGGACAGAATACACCACCCCAGATTTAACCGAAAGTGCTTCAATTGCGG
AAAGGGAGGCCACCACGCTCGAGACTGTAGGATGAGTGAGGAATCAGGGG
CCACCGACATGGAACCAGGTGGGGATCCATTCAAATTTATGATGGAAGTT
GACAGGCTAGCAGCTGATCTCAACCGATTGGGTGACGAATCCGTGACTGA
AAAAAGAAAATGCGTAATTACCGTATCTGGCCTCCCTACGGATTACGAGA
TGGAGTGCCGCATGTTGGAAAACAACCCTGTTGGTCTTAACAGGGCTGAG
ATTGAGCGTGCCGTATGGAATCAGTACAACAGACTTTTCAGACAACAAGA
GAATTTGAAGGCTATGTCAGCATCGAAGGGCCACATCACGGTGAATCCCG
GAACGGGGGTGGACAGAATACACCACCCCAGATTTAACCGAAAGTGCTTC
AATTGCGGAAAGGGAGGCCACCACGCTCGAGACTGTAGGATGAGTGAGGA
ATCAGGGGCCACCGAC
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