mRNA_H-elongata_contig139071.2718.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 251 bits (640), Expect = 4.850e-73 Identity = 148/403 (36.72%), Postives = 231/403 (57.32%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
W +A++ E++G I G + + + P+G V+ R VFK K D+ G+I K K RLVA+GF+Q G+ Y E+ S T ASIR+V+ + E LD++ A+ L+ E+ ++LP + LNK++YG+ A + L +L GF++S +DPCV R ++ V+ +I ++VDD+L A TKR E V L P K+LGE ++L C +RDR AGT+ + Q YI ++ ERF + +TS IP+ S + ++ E EE +P+RE+VG LMW A TRP+ S A +A+ + P+ + W+AAQK L YL T +L + Y + +VDAD+ + + RRSVSG ++A +SWF QK ++++SE+EY+A+
Sbjct: 228 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAM 622
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 257 bits (657), Expect = 5.720e-73 Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
W++A+ E +G + G + V+ P+G+ + ++ F K +K+G+I +K RLVA+GF Q+ + Y SSS P+ ASI+++L + G DV AY L+ E++++LP D + +A+YG+ +G W + L E GF++ +ADPCVFR+++ +VV++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ C I RD AGTL + Q YI +M ERF V TS IP+ G L E EE + P RE +G++MW +T +RPD+SFA +A+ P HW A QK L YL TR+LGITY + G L+ +VDA Y D RRSVSG A + +S + Q + +++S+E+EY+A
Sbjct: 752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1142
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 257 bits (657), Expect = 9.780e-73 Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
W++A+ E +G + G + V+ P+G+ + ++ F K +K+G+I +K RLVA+GF Q+ + Y SSS P+ ASI+++L + G DV AY L+ E++++LP D + +A+YG+ +G W + L E GF++ +ADPCVFR+++ +VV++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ C I RD AGTL + Q YI +M ERF V TS IP+ G L E EE + P RE +G++MW +T +RPD+SFA +A+ P HW A QK L YL TR+LGITY + G L+ +VDA Y D RRSVSG A + +S + Q + +++S+E+EY+A
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1521
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 257 bits (657), Expect = 9.910e-73 Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
W++A+ E +G + G + V+ P+G+ + ++ F K +K+G+I +K RLVA+GF Q+ + Y SSS P+ ASI+++L + G DV AY L+ E++++LP D + +A+YG+ +G W + L E GF++ +ADPCVFR+++ +VV++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ C I RD AGTL + Q YI +M ERF V TS IP+ G L E EE + P RE +G++MW +T +RPD+SFA +A+ P HW A QK L YL TR+LGITY + G L+ +VDA Y D RRSVSG A + +S + Q + +++S+E+EY+A
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1541
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 257 bits (657), Expect = 1.000e-72 Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
W++A+ E +G + G + V+ P+G+ + ++ F K +K+G+I +K RLVA+GF Q+ + Y SSS P+ ASI+++L + G DV AY L+ E++++LP D + +A+YG+ +G W + L E GF++ +ADPCVFR+++ +VV++IV+YVDD+LVA + + D E+ + L FP K+LGE ++ C I RD AGTL + Q YI +M ERF V TS IP+ G L E EE + P RE +G++MW +T +RPD+SFA +A+ P HW A QK L YL TR+LGITY + G L+ +VDA Y D RRSVSG A + +S + Q + +++S+E+EY+A
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1684
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE) HSP 1 Score: 252 bits (644), Expect = 5.640e-72 Identity = 147/403 (36.48%), Postives = 233/403 (57.82%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLET----EIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
W +A++ E++G I G + + + P+G V+ R VFK K D+ G+I K K RLVA+GF+Q G+ Y E+ S T ASIR+V+ + E LD++ A++++ E++++LP + LNK++YG+ A + L +L GF++S +DPCV R ++ V+ +I ++VDD+L A TKR E V L P K+LGE ++L C +RDR AGT+ + Q YI ++ ERF + +TS IP+ S + ++ E EE +P+RE+VG LMW A TRP+ S A +A+ + P+ + W+AAQK L YL T +L + Y + +VDAD+ + + RRSVSG ++A +SWF QK ++++SE+EY+A+
Sbjct: 497 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAM 891
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 250 bits (639), Expect = 1.410e-71 Identity = 147/403 (36.48%), Postives = 231/403 (57.32%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLET----EIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
W +A++ E++G I G + + + P+G V+ R VFK K D+ G+I K K RLVA+GF+Q G+ Y E+ S T ASIR+V+ + E LD++ A++++ E++++LP + LNK++YG+ A + L +L GF++S +DPCV R ++ V+ +I ++VDD+L A TKR E V L P K+LGE ++L C +RDR AGT+ + Q YI ++ ERF + +TS IP+ S + ++ E EE +P+RE+VG LMW A TRP+ S A +A+ + P+ + W+AAQK L YL T L + Y + +VDAD+ + + RRSVSG ++A +SWF QK ++++SE EY+A+
Sbjct: 433 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAYLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEPEYIAI 827
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 236 bits (602), Expect = 1.350e-70 Identity = 141/399 (35.34%), Postives = 223/399 (55.89%), Query Frame = 1
Query: 13 IAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLETE----IYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
++ E++G I G + + + P G V+ R VFK D+ +I K K RLVA+GF+Q G+ Y E+ S T AS R+V+ + E D++ A++++E ++++LP V LNK++YG+ A + L EL+ GF++S +DPCV R ++ VV ++ ++VDD+L A T E V L P K LGE ++L C RDR AGT+ + Q YI ++ ERF V +TS IP+ S + ++ E E +P+RE+VG+LMW A TRPDIS A +A+ + P+ +HW+AAQK L YL T +L + + + +VDAD+ + ++ RRSVSG ++A + W + QK + ++SE+EY+A+
Sbjct: 1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSL-AEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDKSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAM 391
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR) HSP 1 Score: 247 bits (630), Expect = 1.540e-70 Identity = 148/405 (36.54%), Postives = 225/405 (55.56%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAY--RDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAG---GKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYV 1188
W A+ EM ++ VW +V P G +G + VFK K D G I++YK RLVA+GF Q +GI Y E+ S + S R+++ ++A +E Q+DV A+L E E+Y++ PE + + V LN+++YG+ A W + GF+ + D C+++++ G + +V+YVDD+L+A+ K + + L F +KD+GEASY + I RDRN G L L Q YI+ + ERF + S PSVA G S Q D E E M+ IPY VG+LM+A TRPDI++A L ++ NP HW+AA+K ++YL T+N + Y + ++ + D+DY C DTR+S SG M+A A+SW Q +TA ++ E+E+V
Sbjct: 448 WHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCS--PSVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMY--KRTDNLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQTLTATSTMEAEFV 847
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A438E9F8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E9F8_VITVI) HSP 1 Score: 238 bits (607), Expect = 8.370e-70 Identity = 149/405 (36.79%), Postives = 222/405 (54.81%), Query Frame = 1
Query: 1 WKRAIAREMKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAYRDFRKH--VGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSI--IPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
WK A+ EM GVW +VE P G +G + VFK K D GRI++YK RLV +G+ Q +GI ++E+ S + S R++L ++A E Q+DV ++L + +Y+E P + + K V LNK++YG+ A W + + GF+++ D C++ R+ G + +V+YVDD+L+AS + L + F +KDLGEASY L I RDR G L L Q YI + +RF + S +P V K SK+ Q D E EEMR IPY +VG+LM+A T PDI+F L ++ NPR HW+AA+ L YL T++L +TY + + + DAD+ C D ++S +G MMA +SW Q +T ++ E++YVA
Sbjct: 32 WKEAMDDEMNSMYMNGVWDLVELPHGCKPVGCKWVFKTKRDSSGRIERYKTRLVVKGYSQREGIDFKETFSPVSIKDSFRVILSIVAHFDLELHQMDVKTSFLNGDLDENVYMEQPTGFTEVGKEHLVCKLNKSIYGLKQASRQWYLKFDRIITQNGFKKNTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDSDLLIETKHMLSTHFDMKDLGEASYVLSIKIFRDRANGVLKLSQRTYIKKILKRFNMHNCSSTKVPIVKDDK-FSKAQCPQNDDEREEMRTIPYLSLVGSLMYAQVCTHPDIAFVVGMLGRYLSNPRIEHWKAAKNVLMYLQGTKDLMLTYRRTNI--LDVVGFCDADFVGCIDDKKSTTGYIFMMAGGVVSWKSVKQTLTTSSTMEAKYVA 432 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139071.2718.1 >prot_H-elongata_contig139071.2718.1 ID=prot_H-elongata_contig139071.2718.1|Name=mRNA_H-elongata_contig139071.2718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp MKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFback to top mRNA from alignment at H-elongata_contig139071:3..1211- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139071.2718.1 ID=mRNA_H-elongata_contig139071.2718.1|Name=mRNA_H-elongata_contig139071.2718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-elongata_contig139071:3..1211- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139071:3..1211- >mRNA_H-elongata_contig139071.2718.1 ID=mRNA_H-elongata_contig139071.2718.1|Name=mRNA_H-elongata_contig139071.2718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig139071:3..1211- (Himanthalia elongata Himel1 dioecious)back to top |