mRNA_H-elongata_contig13885.2707.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: D7G5L2_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L2_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.280e-45 Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGG---------------EDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQDRCSRPE 342
PVSRKGEP K+LCFEA +WKACVQETVELKLVFRQ+D FVKLLS++RWGQCTP+VL KLRSC+ + +DGIE+T+LLTHKADVL VNEERL +L+G+EVV++A++R +RP+
Sbjct: 133 PVSRKGEPEKKLCFEARSWKACVQETVELKLVFRQQDNSFVKLLSKVRWGQCTPEVLAKLRSCAENSITNANGXXXXXXXXXXXVDDGIEKTQLLTHKADVLKVNEERLGRLDGAEVVSKAENRGNRPD 261
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A4Y2TM18_ARAVE (ATP-dependent DNA helicase n=4 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TM18_ARAVE) HSP 1 Score: 80.5 bits (197), Expect = 1.370e-15 Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEG 297
PV++KG+ K CF++AAW+ + +EL +V RQ D F+ +L +R G+CT DV+ KL++ ++ R+ +DGI T+L THK DV +N L KL G
Sbjct: 54 PVAKKGQN-KTFCFQSAAWRNSIDVNIELHMVKRQDDKNFINILQDVRRGRCTRDVIEKLKATNSHRID-KDGIMATKLSTHKDDVEIINNSHLEKLPG 150
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A4Y2H9K2_ARAVE (ATP-dependent DNA helicase PIF1 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H9K2_ARAVE) HSP 1 Score: 80.5 bits (197), Expect = 2.690e-15 Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEG 297
PV++KG+ K CF++AAW+ + +EL +V RQ D F+ +L +R G+CT DV+ KL++ ++ R+ +DGI T+L THK DV +N L KL G
Sbjct: 337 PVAKKGQN-KTFCFQSAAWRNSIDVNIELHMVKRQDDKNFINILQDVRRGRCTRDVIEKLKATNSHRID-KDGIMATKLSTHKDDVEIINNSHLEKLPG 433
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A6F9DPF2_9ASCI (ATP-dependent DNA helicase PIF1 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPF2_9ASCI) HSP 1 Score: 80.1 bits (196), Expect = 3.670e-15 Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
PVS KG+ K+LCF++ W CV+ ELK+V+RQ D +F+++L IR G+C ++ L++ + RL +D I T+L TH+ +V N + L +LE VV AQD
Sbjct: 334 PVS-KGKGKKKLCFQSLCWPRCVEYLWELKVVYRQSDKQFIRILQDIRIGKCDSTAMSVLKATRHNRLE-KDNIVATKLCTHRENVDQTNSDELERLESKPVVFEAQD 439
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A1S3IUL6_LINUN (ATP-dependent DNA helicase PIF1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IUL6_LINUN) HSP 1 Score: 80.1 bits (196), Expect = 3.670e-15 Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
P KG+ K CF++ AW C+ +EL+ V RQ D +FV++L +R G+C P+ + K ++K + +DGI+ TRL THK DV +N+ L +L+G ++ D
Sbjct: 340 PPVTKGQEKKNFCFQSRAWHKCISVNMELRQVMRQSDKKFVEILQEVRQGRC-PEFVEKTLHATSKHVLDKDGIQATRLCTHKEDVGHINQMHLDRLKGEVYAYQSSD 446
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: UPI0009E4E696 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4E696) HSP 1 Score: 79.7 bits (195), Expect = 5.010e-15 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
P K K+ CF+A +W C+ T+ELK VFRQ+D F+ +L +R G C+ +++KL N+ + +GI T+L THK +V +NE L++L G + V +A D
Sbjct: 332 PPVTKQPGTKKFCFQAESWSDCIDTTIELKHVFRQKDPLFISILQNVRVGSCSEVLVSKLTKTKNQTIE-HNGILATKLCTHKENVNQINEIHLSRLSGDKKVFQASD 438
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: UPI000C040CA8 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C040CA8) HSP 1 Score: 79.0 bits (193), Expect = 9.350e-15 Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
PV+++ P K+ CF+A +W CV T+ELK VFRQ+D F+ +L +R G C+ ++++L + N+ + E GI T+L THK +V +N+ L +L G + V A D
Sbjct: 337 PVTKQPGP-KKFCFQAESWNECVDTTIELKHVFRQKDPLFISILQNVRVGSCSDALVSRLTATKNQIIEKE-GILATKLCTHKENVNQINDIHLTRLPGEKKVFEATD 442
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A6P7VQ33_IXOSC (ATP-dependent DNA helicase PIF1 n=5 Tax=Ixodes TaxID=6944 RepID=A0A6P7VQ33_IXOSC) HSP 1 Score: 78.2 bits (191), Expect = 1.730e-14 Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQDRCSRP 339
P+SRKG+P CF+ AAW+ CVQ ++EL+ V RQRD +FV+LL +R G+C P+ + ++ + + TRL TH DV +N+ R L E V A D P
Sbjct: 328 PISRKGDPAPVFCFQTAAWRQCVQVSLELRQVHRQRDPKFVELLQEVRHGRC-PEWVEEILERTADNCLNTGSVVATRLSTHNDDVDFMNKHRYDALPSQEHVFVATDSAGAP 439
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: UPI000A2A95A0 (ATP-dependent DNA helicase PIF1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A95A0) HSP 1 Score: 77.8 bits (190), Expect = 2.370e-14 Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 28 KRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
K+ CF+A +W C+ T+EL VFRQ+D F+ +L IR G C + +KL N + +DG+ T+L THK DV +N+ L+K+ G + +A D
Sbjct: 344 KKFCFQAESWFKCINRTIELTHVFRQKDPMFISILQNIRVGSCCDKITSKLTQTRNNTIE-KDGVLATKLCTHKEDVDQINQIHLSKITGKSQIYQAND 441
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A8D0DZ18_9SAUR (ATP-dependent DNA helicase PIF1 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DZ18_9SAUR) HSP 1 Score: 77.0 bits (188), Expect = 4.430e-14 Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1
Query: 1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
PVS+ E K CF+A +WK C+ +EL +V RQ D EF+ LL+ +R G+CT +V +L + R+ E GI TRL THK DV N RL +L G + +A D
Sbjct: 349 PVSKATEQPK-FCFQAQSWKKCIHLNMELTIVQRQTDREFISLLNALRQGRCTEEVTRQLTQTATHRVERE-GILATRLCTHKDDVELTNSRRLQELPGEQRCFKAVD 454 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13885.2707.1 >prot_H-elongata_contig13885.2707.1 ID=prot_H-elongata_contig13885.2707.1|Name=mRNA_H-elongata_contig13885.2707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGback to top mRNA from alignment at H-elongata_contig13885:3988..5773+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13885.2707.1 ID=mRNA_H-elongata_contig13885.2707.1|Name=mRNA_H-elongata_contig13885.2707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1786bp|location=Sequence derived from alignment at H-elongata_contig13885:3988..5773+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13885:3988..5773+ >mRNA_H-elongata_contig13885.2707.1 ID=mRNA_H-elongata_contig13885.2707.1|Name=mRNA_H-elongata_contig13885.2707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig13885:3988..5773+ (Himanthalia elongata Himel1 dioecious)back to top |