mRNA_H-elongata_contig13885.2707.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13885.2707.1
Unique NamemRNA_H-elongata_contig13885.2707.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: D7G5L2_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L2_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.280e-45
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGG---------------EDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQDRCSRPE 342
            PVSRKGEP K+LCFEA +WKACVQETVELKLVFRQ+D  FVKLLS++RWGQCTP+VL KLRSC+   +                 +DGIE+T+LLTHKADVL VNEERL +L+G+EVV++A++R +RP+
Sbjct:  133 PVSRKGEPEKKLCFEARSWKACVQETVELKLVFRQQDNSFVKLLSKVRWGQCTPEVLAKLRSCAENSITNANGXXXXXXXXXXXVDDGIEKTQLLTHKADVLKVNEERLGRLDGAEVVSKAENRGNRPD 261          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A4Y2TM18_ARAVE (ATP-dependent DNA helicase n=4 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TM18_ARAVE)

HSP 1 Score: 80.5 bits (197), Expect = 1.370e-15
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEG 297
            PV++KG+  K  CF++AAW+  +   +EL +V RQ D  F+ +L  +R G+CT DV+ KL++ ++ R+  +DGI  T+L THK DV  +N   L KL G
Sbjct:   54 PVAKKGQN-KTFCFQSAAWRNSIDVNIELHMVKRQDDKNFINILQDVRRGRCTRDVIEKLKATNSHRID-KDGIMATKLSTHKDDVEIINNSHLEKLPG 150          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A4Y2H9K2_ARAVE (ATP-dependent DNA helicase PIF1 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H9K2_ARAVE)

HSP 1 Score: 80.5 bits (197), Expect = 2.690e-15
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEG 297
            PV++KG+  K  CF++AAW+  +   +EL +V RQ D  F+ +L  +R G+CT DV+ KL++ ++ R+  +DGI  T+L THK DV  +N   L KL G
Sbjct:  337 PVAKKGQN-KTFCFQSAAWRNSIDVNIELHMVKRQDDKNFINILQDVRRGRCTRDVIEKLKATNSHRID-KDGIMATKLSTHKDDVEIINNSHLEKLPG 433          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A6F9DPF2_9ASCI (ATP-dependent DNA helicase PIF1 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPF2_9ASCI)

HSP 1 Score: 80.1 bits (196), Expect = 3.670e-15
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
            PVS KG+  K+LCF++  W  CV+   ELK+V+RQ D +F+++L  IR G+C    ++ L++  + RL  +D I  T+L TH+ +V   N + L +LE   VV  AQD
Sbjct:  334 PVS-KGKGKKKLCFQSLCWPRCVEYLWELKVVYRQSDKQFIRILQDIRIGKCDSTAMSVLKATRHNRLE-KDNIVATKLCTHRENVDQTNSDELERLESKPVVFEAQD 439          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A1S3IUL6_LINUN (ATP-dependent DNA helicase PIF1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IUL6_LINUN)

HSP 1 Score: 80.1 bits (196), Expect = 3.670e-15
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
            P   KG+  K  CF++ AW  C+   +EL+ V RQ D +FV++L  +R G+C P+ + K    ++K +  +DGI+ TRL THK DV  +N+  L +L+G     ++ D
Sbjct:  340 PPVTKGQEKKNFCFQSRAWHKCISVNMELRQVMRQSDKKFVEILQEVRQGRC-PEFVEKTLHATSKHVLDKDGIQATRLCTHKEDVGHINQMHLDRLKGEVYAYQSSD 446          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: UPI0009E4E696 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4E696)

HSP 1 Score: 79.7 bits (195), Expect = 5.010e-15
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
            P   K    K+ CF+A +W  C+  T+ELK VFRQ+D  F+ +L  +R G C+  +++KL    N+ +   +GI  T+L THK +V  +NE  L++L G + V +A D
Sbjct:  332 PPVTKQPGTKKFCFQAESWSDCIDTTIELKHVFRQKDPLFISILQNVRVGSCSEVLVSKLTKTKNQTIE-HNGILATKLCTHKENVNQINEIHLSRLSGDKKVFQASD 438          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: UPI000C040CA8 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C040CA8)

HSP 1 Score: 79.0 bits (193), Expect = 9.350e-15
Identity = 42/108 (38.89%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
            PV+++  P K+ CF+A +W  CV  T+ELK VFRQ+D  F+ +L  +R G C+  ++++L +  N+ +  E GI  T+L THK +V  +N+  L +L G + V  A D
Sbjct:  337 PVTKQPGP-KKFCFQAESWNECVDTTIELKHVFRQKDPLFISILQNVRVGSCSDALVSRLTATKNQIIEKE-GILATKLCTHKENVNQINDIHLTRLPGEKKVFEATD 442          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A6P7VQ33_IXOSC (ATP-dependent DNA helicase PIF1 n=5 Tax=Ixodes TaxID=6944 RepID=A0A6P7VQ33_IXOSC)

HSP 1 Score: 78.2 bits (191), Expect = 1.730e-14
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQDRCSRP 339
            P+SRKG+P    CF+ AAW+ CVQ ++EL+ V RQRD +FV+LL  +R G+C P+ + ++   +         +  TRL TH  DV  +N+ R   L   E V  A D    P
Sbjct:  328 PISRKGDPAPVFCFQTAAWRQCVQVSLELRQVHRQRDPKFVELLQEVRHGRC-PEWVEEILERTADNCLNTGSVVATRLSTHNDDVDFMNKHRYDALPSQEHVFVATDSAGAP 439          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: UPI000A2A95A0 (ATP-dependent DNA helicase PIF1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A95A0)

HSP 1 Score: 77.8 bits (190), Expect = 2.370e-14
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   28 KRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
            K+ CF+A +W  C+  T+EL  VFRQ+D  F+ +L  IR G C   + +KL    N  +  +DG+  T+L THK DV  +N+  L+K+ G   + +A D
Sbjct:  344 KKFCFQAESWFKCINRTIELTHVFRQKDPMFISILQNIRVGSCCDKITSKLTQTRNNTIE-KDGVLATKLCTHKEDVDQINQIHLSKITGKSQIYQAND 441          
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Match: A0A8D0DZ18_9SAUR (ATP-dependent DNA helicase PIF1 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DZ18_9SAUR)

HSP 1 Score: 77.0 bits (188), Expect = 4.430e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWGQCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGSEVVARAQD 324
            PVS+  E  K  CF+A +WK C+   +EL +V RQ D EF+ LL+ +R G+CT +V  +L   +  R+  E GI  TRL THK DV   N  RL +L G +   +A D
Sbjct:  349 PVSKATEQPK-FCFQAQSWKKCIHLNMELTIVQRQTDREFISLLNALRQGRCTEEVTRQLTQTATHRVERE-GILATRLCTHKDDVELTNSRRLQELPGEQRCFKAVD 454          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13885.2707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5L2_ECTSI1.280e-4562.79ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A4Y2TM18_ARAVE1.370e-1542.42ATP-dependent DNA helicase n=4 Tax=Araneus ventric... [more]
A0A4Y2H9K2_ARAVE2.690e-1542.42ATP-dependent DNA helicase PIF1 n=2 Tax=Araneus ve... [more]
A0A6F9DPF2_9ASCI3.670e-1540.74ATP-dependent DNA helicase PIF1 n=1 Tax=Phallusia ... [more]
A0A1S3IUL6_LINUN3.670e-1537.04ATP-dependent DNA helicase PIF1 n=1 Tax=Lingula un... [more]
UPI0009E4E6965.010e-1537.96ATP-dependent DNA helicase PIF1-like n=1 Tax=Orbic... [more]
UPI000C040CA89.350e-1538.89ATP-dependent DNA helicase PIF1-like n=1 Tax=Stylo... [more]
A0A6P7VQ33_IXOSC1.730e-1438.94ATP-dependent DNA helicase PIF1 n=5 Tax=Ixodes Tax... [more]
UPI000A2A95A02.370e-1438.38ATP-dependent DNA helicase PIF1 n=1 Tax=Exaiptasia... [more]
A0A8D0DZ18_9SAUR4.430e-1442.59ATP-dependent DNA helicase PIF1 n=1 Tax=Salvator m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13885contigH-elongata_contig13885:3988..5773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.3e-38
Seed eggNOG ortholog2880.D7G5L2
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA helicase
Ec32 orthologEc-16_002340.1
Exons4
Model size352
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13885.2707.1prot_H-elongata_contig13885.2707.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13885 3988..5771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929823.987567-CDS-H-elongata_contig13885:3987..40591622929823.987567-CDS-H-elongata_contig13885:3987..4059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 3988..4059 +
1691679173.228325-CDS-H-elongata_contig13885:3987..40591691679173.228325-CDS-H-elongata_contig13885:3987..4059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 3988..4059 +
1622929824.005201-CDS-H-elongata_contig13885:4621..46751622929824.005201-CDS-H-elongata_contig13885:4621..4675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 4622..4675 +
1691679173.2506008-CDS-H-elongata_contig13885:4621..46751691679173.2506008-CDS-H-elongata_contig13885:4621..4675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 4622..4675 +
1622929824.0235734-CDS-H-elongata_contig13885:4988..51381622929824.0235734-CDS-H-elongata_contig13885:4988..5138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 4989..5138 +
1691679173.274261-CDS-H-elongata_contig13885:4988..51381691679173.274261-CDS-H-elongata_contig13885:4988..5138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 4989..5138 +
1622929824.039301-CDS-H-elongata_contig13885:5699..57711622929824.039301-CDS-H-elongata_contig13885:5699..5771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 5700..5771 +
1691679173.2822123-CDS-H-elongata_contig13885:5699..57711691679173.2822123-CDS-H-elongata_contig13885:5699..5771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13885 5700..5771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13885.2707.1

>prot_H-elongata_contig13885.2707.1 ID=prot_H-elongata_contig13885.2707.1|Name=mRNA_H-elongata_contig13885.2707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
PVSRKGEPVKRLCFEAAAWKACVQETVELKLVFRQRDVEFVKLLSRIRWG
QCTPDVLTKLRSCSNKRLGGEDGIEETRLLTHKADVLGVNEERLAKLEGS
EVVARAQDRCSRPEYR
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mRNA from alignment at H-elongata_contig13885:3988..5773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13885.2707.1 ID=mRNA_H-elongata_contig13885.2707.1|Name=mRNA_H-elongata_contig13885.2707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1786bp|location=Sequence derived from alignment at H-elongata_contig13885:3988..5773+ (Himanthalia elongata Himel1 dioecious)
CCCGTCTCGCGAAAAGGAGAGCCGGTGAAAAGGCTGTGCTTCGAAGCAGC GGCATGGAAGGCGTGTGTTCAGGTGGGAATTTTGACATCAGCTTATGTGA GAATTCAATCAATCAAAAATAATTGTTCCCTCCTTTCCCCTTTCCACGCA AACCTATCGTAACGTCACATAACGTACCGTTGGATGTACCGAGATACGGA AGCATCGTATTGGCTCCTCTATTCTCTTGCGCACGACGAAATCGGACGGG AAACAGTCGGGACTAAAAAAAACCCAGGGATGTAGCAAAGCAACACGCGC TCCTGGTTCGGACGGTCTCACGACGATGTCGCATATCGCATGTGACAGGT GCCGCAGAACGGGGAGGCCCTATAGAATCGATACACACGCATGTATAGGA AGAGCAGTGGAGCTAGCAACGTGCAACAATGGAGAGGGTTGGGGGTTCGT CGCGGGGAGAGAGTTCGCCGGAGGGAGATAATTGGCCGTTTCCCCCATTC GCGACTCGCTTGCTCGCCCCCCCCATCCCCTCCCCTCCCCTCCTTTCCTC GCCCTTGTCGAAACGCCACCGTTTTCGGGGTTCCCTAAAAACCTTTCGGT GATTTTGCTCTTGTTTTGTCTTTGCGGAGGGCAGGAGACGGTGGAACTGA AGCTGGTGTTCCGCCAACGCGACGTGGAATTCGTCAAGGTAAGATATATG TGCGTCGGGCGTAATCGTGTTCAGCGTCCCTCGAAACCTCTCATTTTTTT TCTCTCAGTCTTGGCCTCCGCGCTTTTTCTTCCTTTCTCTTTCGAGTACC GCGCTTTGACTGTACAAGCGCCTTATATATCTATGGCCAATGTGATCAGC TTCAGGGCATATTGTTGATAGTATAAAACGGCCAAGCAATATCTGCATAC GGGGCGTTTGCGTGCCAAGATGAGTAATACTGAATGGTTTGCCTGCTACG CTGCTGCTACAACATGCCGAAAAAACAAAAACAAAACAAAAACGCTCGAA GCTGCTTAGCCGGATCCGGTGGGGGCAGTGCACGCCGGACGTTCTGACGA AGCTGAGGAGCTGCAGCAACAAGCGTCTCGGTGGAGAGGACGGCATCGAG GAGACGCGATTGCTGACGCACAAGGCGGACGTTCTTGGGGTCAACGAAGA GGTGTGTGTGTGTGTGTGTGTGTGTTTATTTTTAAAATAAACATTGAACT TATTCCAACCCTCTGAACATCCACACCTTCTTAGCACCATGAGAGGTGCA GTCCAGGGGACCAACTATCGTCAGGTTCGAATGTGTACAATACTACCCTT GAGTGCAAAATCTTCACACAAGGTAAGTCGTATTTCCCAAAAGTAAGTTC GTCGGGTCATGTAGGAGTGGACTTGTATAAGAAGGGAAGTTGCGCGGGAG AGATGGAGGGGGGGGGGATAGGGATTATGTGATCTGTGGGGTTCATTGGT ACGTGATCTATGAAATTATTGAAGGGAAGGGACTAAAGTGAACTAAAGGG CAGGAAGTAAAATATGAGGTACAAGAATAAGTGTGTATGTGTGTGTGGCT GAATTCATTAAATTGCTAATTTTACTATATTATTCTTAGTGCGAACTACA GAAAAGAGCATTTTGTACATTCTGGGGGCAAGTTTTATTGTTATGGGTTT ATTTTGTACTGTACTGTGTAAGGTATTAATGCATCCCCGCTGCACCCGTG AACGAATCACAGCGCTTGGCGAAGCTCGAAGGGTCTGAGGTGGTCGCGAG GGCACAGGACAGGTGCAGCCGACCGGAATACAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig13885:3988..5773+

>mRNA_H-elongata_contig13885.2707.1 ID=mRNA_H-elongata_contig13885.2707.1|Name=mRNA_H-elongata_contig13885.2707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig13885:3988..5773+ (Himanthalia elongata Himel1 dioecious)
CCCGTCTCGCGAAAAGGAGAGCCGGTGAAAAGGCTGTGCTTCGAAGCAGC
GGCATGGAAGGCGTGTGTTCAGCCCGTCTCGCGAAAAGGAGAGCCGGTGA
AAAGGCTGTGCTTCGAAGCAGCGGCATGGAAGGCGTGTGTTCAGGAGACG
GTGGAACTGAAGCTGGTGTTCCGCCAACGCGACGTGGAATTCGTCAAGGA
GACGGTGGAACTGAAGCTGGTGTTCCGCCAACGCGACGTGGAATTCGTCA
AGCTGCTTAGCCGGATCCGGTGGGGGCAGTGCACGCCGGACGTTCTGACG
AAGCTGAGGAGCTGCAGCAACAAGCGTCTCGGTGGAGAGGACGGCATCGA
GGAGACGCGATTGCTGACGCACAAGGCGGACGTTCTTGGGGTCAACGAAG
AGCTGCTTAGCCGGATCCGGTGGGGGCAGTGCACGCCGGACGTTCTGACG
AAGCTGAGGAGCTGCAGCAACAAGCGTCTCGGTGGAGAGGACGGCATCGA
GGAGACGCGATTGCTGACGCACAAGGCGGACGTTCTTGGGGTCAACGAAG
AGCGCTTGGCGAAGCTCGAAGGGTCTGAGGTGGTCGCGAGGGCACAGGAC
AGGTGCAGCCGACCGGAATACAGGCGCTTGGCGAAGCTCGAAGGGTCTGA
GGTGGTCGCGAGGGCACAGGACAGGTGCAGCCGACCGGAATACAGG
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