mRNA_H-elongata_contig138629.2699.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138629.2699.1
Unique NamemRNA_H-elongata_contig138629.2699.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138629.2699.1 vs. uniprot
Match: D8LIP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP6_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 4.820e-46
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 LSWLLNVATVVLYIDWEWFGVQDALFKDPNYWAVAAFGVIGVLMRDVAWKFYHRWWHPKLHHLLVEMEKGHLKDIDLPEMLRNSYSLDDVVQVQTT 288
            +SWLLN++  V  IDWEWFGVQ ALFKDPNYWAV  FGVIGVLMRDVAWK YHRWW+PKLHH+LVEMEKGHL+DIDLP  LR SYSL  VVQ  T+
Sbjct:    1 MSWLLNISVYVSTIDWEWFGVQTALFKDPNYWAVTMFGVIGVLMRDVAWKGYHRWWNPKLHHVLVEMEKGHLEDIDLPRSLRRSYSLHQVVQEDTS 96
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BLAST of mRNA_H-elongata_contig138629.2699.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-12
Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:   19 VATVVLYIDWEWFGVQDALFKDPNYWAVAAFGVIGVLMRDVAWKFYHRWWHPKLHHLLVEMEKGH-----LKDIDLPEM 240
            V  ++  +D+++F V   L  +P +WAV       V MRD++WKFYHRWW PKLHHL++E+E        L D   PE+
Sbjct: 1391 VLNILHKVDFDFFMVFFHLMVNPTFWAVVTLCFTAVAMRDLSWKFYHRWWQPKLHHLILEVEASRGDPVILTDSGTPEV 1469
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BLAST of mRNA_H-elongata_contig138629.2699.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.740e-12
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   19 VATVVLYIDWEWFGVQDALFKDPNYWAVAAFGVIGVLMRDVAWKFYHRWWHPKLHHLLVEME 204
            V  ++  +D+++F V   L  +P +WAV       V MRD++WKFYHRWW PKLHHL++E+E
Sbjct: 1253 VLNILHKVDFDFFMVFFHLIVNPTFWAVVTLCFTAVAMRDLSWKFYHRWWQPKLHHLILEVE 1314
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BLAST of mRNA_H-elongata_contig138629.2699.1 vs. uniprot
Match: D7G0C0_ECTSI (PhoLip_ATPase_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-10
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:   40 IDWEWFGVQDALFKDPNYWAVAAFGVIGVLMRDVAWKFYHRWWHPKLHHLLVEMEKGHLKDID--LPEMLRNSYS 258
            I+W++ GV  AL +   YWAV  + ++ V+ RD A KF+HRWW P+LHHL++E +K  + + +  +PE  R++ S
Sbjct:   61 INWDYHGVFYALLQSKPYWAVMIWCLVVVVGRDWASKFHHRWWRPRLHHLMLESDKRAMNEREKAVPEQGRSNNS 135
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BLAST of mRNA_H-elongata_contig138629.2699.1 vs. uniprot
Match: A0A139AZW9_GONPJ (Phospholipid-transporting ATPase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AZW9_GONPJ)

HSP 1 Score: 50.4 bits (119), Expect = 4.800e-5
Identity = 21/58 (36.21%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:   49 EWFGVQDALFKDPNYWAVAAFGVIGVLMRDVAWKFYHRWWHPKLHHLLVEMEKGHLKD 222
            E  G    L+    +W       + VL+RD AWKFY R WHP+ +H++ E++K ++ D
Sbjct: 1132 ELLGTAGPLYSSAVFWWTIILLPVLVLLRDFAWKFYKRTWHPESYHIIQEIQKYNIPD 1189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138629.2699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIP6_ECTSI4.820e-4677.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU18_ECTSI1.270e-1241.77Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A6H5KPG5_9PHAE1.740e-1246.77P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
D7G0C0_ECTSI1.310e-1041.33PhoLip_ATPase_C domain-containing protein n=1 Tax=... [more]
A0A139AZW9_GONPJ4.800e-536.21Phospholipid-transporting ATPase n=1 Tax=Gonapodya... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138629contigH-elongata_contig138629:24..1315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D7FU18
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_003180.1
Exons3
Model size288
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138629.2699.1prot_H-elongata_contig138629.2699.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138629 24..1315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.9293797-CDS-H-elongata_contig138629:23..1471622929822.9293797-CDS-H-elongata_contig138629:23..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138629 24..147 -
1691679172.6941087-CDS-H-elongata_contig138629:23..1471691679172.6941087-CDS-H-elongata_contig138629:23..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138629 24..147 -
1622929822.945813-CDS-H-elongata_contig138629:376..4801622929822.945813-CDS-H-elongata_contig138629:376..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138629 377..480 -
1691679172.7148585-CDS-H-elongata_contig138629:376..4801691679172.7148585-CDS-H-elongata_contig138629:376..480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138629 377..480 -
1622929822.9616218-CDS-H-elongata_contig138629:1255..13151622929822.9616218-CDS-H-elongata_contig138629:1255..1315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138629 1256..1315 -
1691679172.7250593-CDS-H-elongata_contig138629:1255..13151691679172.7250593-CDS-H-elongata_contig138629:1255..1315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138629 1256..1315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138629.2699.1

>prot_H-elongata_contig138629.2699.1 ID=prot_H-elongata_contig138629.2699.1|Name=mRNA_H-elongata_contig138629.2699.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
LSWLLNVATVVLYIDWEWFGVQDALFKDPNYWAVAAFGVIGVLMRDVAWK
FYHRWWHPKLHHLLVEMEKGHLKDIDLPEMLRNSYSLDDVVQVQTT
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mRNA from alignment at H-elongata_contig138629:24..1315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138629.2699.1 ID=mRNA_H-elongata_contig138629.2699.1|Name=mRNA_H-elongata_contig138629.2699.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-elongata_contig138629:24..1315- (Himanthalia elongata Himel1 dioecious)
TTGTCTTGGCTTCTCAACGTGGCTACGGTCGTCCTGTACATTGACTGGGA
GTGGTTCGGGGTAAGGAAGTGCATATTATTATTATGGCTATGATTATGAC
AACGATTATGATTATGACAATGATCATGATTATTATGCTTTTACTATTAT
GATTATTATTATGATTAATGTTATCATTATTATGATCATTATGGTTATGA
TTATTTTATTTAAAATACTTCAGGCTCATTCTAACTCTCCGAACATCCAA
TGTTATGATTATTATGCTTATTATTATGCTTATTATGGTTATGATTATTA
TTATGATTATTATGGTTATGATGATTATTATTATTATGATTGTTATGTTT
ATTATTATTATTATTGTTATGATTATTATTATGATTAATGTTATGATTAT
TATGGTTATTATTATGATTATTATTATGGTTACTATTTTGCTTACTATTA
TGATTATTATTATGATTAATGTTATGATTATTATAATTAATGTTATGATA
ATTATGCTTACTATTATGCTTAATATTATTATTATGATTATGATGATGAT
TATTATTATGATTAATGTTATGATTATTATGGCTATTATGATTCTGGTTA
TTATGCTCATTATTACGATTAATGCTGTGATTTCTTATGATTCTTATGGT
TATTATGATTATTATTAAAAACACATGAACTCATTAGAACCCTCCGAACA
TCCACGTCTTCTTTGCATCATTAGAGGTGAGGTGTAGTCCAGGGAACCAA
CTATTGTCAGGTTCGAATGGGGACATTTTATTGTGTGGCACGATACGACA
CGATACGACACGATGCATTCATTATCACGTGGTAGGTTCAAGACGCGCTG
TTCAAGGATCCCAACTACTGGGCAGTCGCGGCTTTCGGTGTTATCGGGGT
GCTCATGCGCGACGTCGCCTGGAAGTTTTACCACCGCTGGTGCGTGTTTA
TGTCGGGGTGACCCAACATTGCGATCAGTGCTGAATCCTAGGGGCAAATA
CTTCATCCTATACGCCCGAGGCCTCCAGGTTTGGTATAAAGGAGGTGTGG
GAGGTCGGATTCGATTTTCAGATTTTTTAGGAAGAAGCTAGATGGACGGT
TGCAATATTCGAGGGGGCTGTGGTTCAGCTTCCCCCCCTCCCCCCCCCTC
CCATCTCTCTTTCTCCAGGTGGCACCCTAAGCTTCATCACCTCCTGGTGG
AGATGGAAAAGGGACACTTGAAAGACATCGATCTGCCAGAGATGCTACGA
AATAGCTACTCTCTGGACGATGTCGTACAGGTACAGACAACT
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Coding sequence (CDS) from alignment at H-elongata_contig138629:24..1315-

>mRNA_H-elongata_contig138629.2699.1 ID=mRNA_H-elongata_contig138629.2699.1|Name=mRNA_H-elongata_contig138629.2699.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig138629:24..1315- (Himanthalia elongata Himel1 dioecious)
TTGTCTTGGCTTCTCAACGTGGCTACGGTCGTCCTGTACATTGACTGGGA
GTGGTTCGGGTTGTCTTGGCTTCTCAACGTGGCTACGGTCGTCCTGTACA
TTGACTGGGAGTGGTTCGGGGTTCAAGACGCGCTGTTCAAGGATCCCAAC
TACTGGGCAGTCGCGGCTTTCGGTGTTATCGGGGTGCTCATGCGCGACGT
CGCCTGGAAGTTTTACCACCGCTGGTTCAAGACGCGCTGTTCAAGGATCC
CAACTACTGGGCAGTCGCGGCTTTCGGTGTTATCGGGGTGCTCATGCGCG
ACGTCGCCTGGAAGTTTTACCACCGCTGGTGGCACCCTAAGCTTCATCAC
CTCCTGGTGGAGATGGAAAAGGGACACTTGAAAGACATCGATCTGCCAGA
GATGCTACGAAATAGCTACTCTCTGGACGATGTCGTACAGGTACAGACAA
CTGTGGCACCCTAAGCTTCATCACCTCCTGGTGGAGATGGAAAAGGGACA
CTTGAAAGACATCGATCTGCCAGAGATGCTACGAAATAGCTACTCTCTGG
ACGATGTCGTACAGGTACAGACAACT
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