mRNA_H-elongata_contig138592.2696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138592.2696.1
Unique NamemRNA_H-elongata_contig138592.2696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138592.2696.1 vs. uniprot
Match: D7G4S5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S5_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.860e-23
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 RAYRIVLNNKVQAADFYSAVGGMTSLLVGLSRR------SAVGAPKAVSPWSLMAQGIAAGTVGFAMAAATGVPVYKPLELLGMRGFQPEDQGAG 267
            R YRI LN  VQ  DFY A+GG+ SL++GLS R      +  G  + VSPWSLMAQGIAAG+VGF +  A G+P+ +PLELL  RGF+ +    G
Sbjct:  105 RTYRIALNKGVQTVDFYGAIGGVMSLVLGLSTRRIGGGQAKAGIARVVSPWSLMAQGIAAGSVGFVLGKAVGLPMERPLELLNARGFEADRDVGG 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138592.2696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4S5_ECTSI4.860e-2352.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138592contigH-elongata_contig138592:842..1655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.6416423-CDS-H-elongata_contig138592:841..9011622929822.6416423-CDS-H-elongata_contig138592:841..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138592 842..901 -
1691679172.592507-CDS-H-elongata_contig138592:841..9011691679172.592507-CDS-H-elongata_contig138592:841..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138592 842..901 -
1622929822.6539378-CDS-H-elongata_contig138592:1442..16551622929822.6539378-CDS-H-elongata_contig138592:1442..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138592 1443..1655 -
1691679172.6031568-CDS-H-elongata_contig138592:1442..16551691679172.6031568-CDS-H-elongata_contig138592:1442..1655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138592 1443..1655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138592.2696.1prot_H-elongata_contig138592.2696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138592 842..1655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138592.2696.1

>prot_H-elongata_contig138592.2696.1 ID=prot_H-elongata_contig138592.2696.1|Name=mRNA_H-elongata_contig138592.2696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
RAYRIVLNNKVQAADFYSAVGGMTSLLVGLSRRSAVGAPKAVSPWSLMAQ
GIAAGTVGFAMAAATGVPVYKPLELLGMRGFQPEDQGAGE*
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mRNA from alignment at H-elongata_contig138592:842..1655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138592.2696.1 ID=mRNA_H-elongata_contig138592.2696.1|Name=mRNA_H-elongata_contig138592.2696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=814bp|location=Sequence derived from alignment at H-elongata_contig138592:842..1655- (Himanthalia elongata Himel1 dioecious)
AGAGCCTACCGAATCGTCCTTAACAACAAGGTCCAGGCGGCGGACTTCTA
CAGCGCCGTCGGGGGAATGACATCCCTCTTGGTAGGGCTTTCTAGGCGTT
CGGCAGTCGGGGCTCCAAAGGCGGTGTCCCCGTGGTCGCTTATGGCACAG
GGGATCGCGGCGGGCACCGTGGGGTTCGCGATGGCGGCGGCTACGGGTGT
TCCTGTTTACAAGGTGGGAGGAGTTACGGTTTTCGTCTCTTTCAACGGTG
TAGCGTTACGGCCTTCGATTCACTTCGCTTATACACTTCGCGCGTGCGCT
AAAATAGGTGCACAAGGCACGTGCTTTGCGCAAGCGTTCATGCTTCGTTT
TGTCCCGTAGTCGTGCTGTATGCTCTCCGGTGGATTTCGCCCATTCACCC
GCCCTTTCGTAGCGGGAATGTACACTTGCTCCCCTAGACAGGTGTTAGAC
TGGTTAACCTTTTACTCGGAAAGGGTATGAAGACGTGCGTTTTAATGACT
GCTGGTATACTGCGACGAATTCGTTTGATCGGAAAGCCTTGGCCAGCCCC
GACGCACGATGCGACTCGGTCCCCCTATGCAATCCTAAACGTAATCCGCG
AGCCCTGCCCTAGCGCGAGCTTTATCGATCGAGCAACGTGTATCCCACCA
ACCGAGAAGCGCGTGTCTCGAACAAATGAAAGCAAGTGCCGAGAGCGCCT
TTAACACACATTTTCCTCCCTTCTTCCACCAACCTTCTGCTGCGACACCG
ACAGCCCTTGGAACTCCTGGGAATGCGGGGATTCCAGCCCGAAGATCAGG
GCGCCGGCGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig138592:842..1655-

>mRNA_H-elongata_contig138592.2696.1 ID=mRNA_H-elongata_contig138592.2696.1|Name=mRNA_H-elongata_contig138592.2696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig138592:842..1655- (Himanthalia elongata Himel1 dioecious)
AGAGCCTACCGAATCGTCCTTAACAACAAGGTCCAGGCGGCGGACTTCTA
CAGCGCCGTCGGGGGAATGACATCCCTCTTGGTAGGGCTTTCTAGGCGTT
CGGCAGTCGGGGCTCCAAAGGCGGTGTCCCCGTGGTCGCTTATGGCACAG
GGGATCGCGGCGGGCACCGTGGGGTTCGCGATGGCGGCGGCTACGGGTGT
TCCTGTTTACAAGAGAGCCTACCGAATCGTCCTTAACAACAAGGTCCAGG
CGGCGGACTTCTACAGCGCCGTCGGGGGAATGACATCCCTCTTGGTAGGG
CTTTCTAGGCGTTCGGCAGTCGGGGCTCCAAAGGCGGTGTCCCCGTGGTC
GCTTATGGCACAGGGGATCGCGGCGGGCACCGTGGGGTTCGCGATGGCGG
CGGCTACGGGTGTTCCTGTTTACAAGCCCTTGGAACTCCTGGGAATGCGG
GGATTCCAGCCCGAAGATCAGGGCGCCGGCGAATAACCCTTGGAACTCCT
GGGAATGCGGGGATTCCAGCCCGAAGATCAGGGCGCCGGCGAATAA
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