mRNA_H-elongata_contig138575.2695.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138575.2695.1
Unique NamemRNA_H-elongata_contig138575.2695.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: R7UJ35_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJ35_CAPTE)

HSP 1 Score: 68.2 bits (165), Expect = 1.340e-13
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 SEDSLGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESM 204
            S+D L WWA     YP VA +AR  L V ASS  +ER+FS+GG +VT KR  L+   V  ++FL ++M
Sbjct:    1 SQDPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLGGNIVTNKRTKLTSSNVDSLIFLAKNM 68          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: E2BLX1_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BLX1_HARSA)

HSP 1 Score: 65.1 bits (157), Expect = 2.330e-12
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    7 DSLGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESM 204
            D L WW   +  +P +A LAR  L + A+  +SERVFSVGG +VT KR  L  D V  I+F H+++
Sbjct:    1 DPLMWWKANASQFPTLAPLARHYLNIAATETSSERVFSVGGNIVTNKRTNLLADNVRQIIFCHDNL 66          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 64.3 bits (155), Expect = 2.180e-11
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    7 DSLGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESM 204
            D   WW K   ++PH++ +AR+ L + A+S  SER+FSV G +VTKKR  L  + V  +VFL++++
Sbjct:   67 DVFEWWRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPENVDMLVFLNKNL 132          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.730e-11
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   13 LGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESMKHDLW 219
            L WW +  R YP++  LA+  L+V A+SA SERVFSV  L+ TKKR  L  D V  +VFL E+     W
Sbjct:   95 LQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLIEW 163          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: UPI00148A67FC (zinc finger BED domain-containing protein 1-like n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A67FC)

HSP 1 Score: 65.9 bits (159), Expect = 7.560e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   13 LGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESMKH 210
            L WW K S  +P ++ LA++ L + ASS +SERVFS+GG +V+KKR  LS   V   +FL+++MK+
Sbjct:  601 LEWWKKNSLFFPRISILAKKFLAIPASSVSSERVFSLGGQIVSKKRCRLSHSNVDLFIFLNKNMKY 666          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: A0A7S3PUA6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUA6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.670e-11
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   13 LGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESMKHDLW 219
            L WW +  R YP++  LA+  L+V A+SA SERVFSV  L+ TKKR  L  D V  +VFL E+     W
Sbjct:  162 LQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLIEW 230          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: UPI000B907786 (uncharacterized protein LOC110854843 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B907786)

HSP 1 Score: 65.5 bits (158), Expect = 8.180e-11
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 SEDSLGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHES 201
            SED L WW K    +P++A LA+  L++Q +SA SER FS  GL+VT +R  L   +V  I+F+H++
Sbjct:  250 SEDVLDWWRKNEYGFPNLANLAKRFLSIQVTSAPSERAFSTAGLVVTSRRSSLHPLKVKKILFVHDN 316          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: A0A226DDY8_FOLCA (Zinc finger BED domain-containing protein 1 n=4 Tax=Folsomia candida TaxID=158441 RepID=A0A226DDY8_FOLCA)

HSP 1 Score: 65.5 bits (158), Expect = 1.030e-10
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 SEDSLGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHES 201
            SED L WW K    +P++A LA+  L++Q +SA SER FS  GL+VT +R  L   +V  I+F+H++
Sbjct:  586 SEDVLDWWRKNEYGFPNLANLAKRFLSIQVTSAPSERAFSTAGLVVTSRRSSLHPLKVKKILFVHDN 652          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: UPI0014461CE7 (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI0014461CE7)

HSP 1 Score: 62.4 bits (150), Expect = 2.210e-10
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 EDSLGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESM 204
            E+ L WW +  RVYP ++ LA++ L++ A+SA SERVFS GG +VT  R  L  + V  +VFL +++
Sbjct:   99 ENPLDWWREHQRVYPRLSKLAKKYLSIPATSAPSERVFSTGGNIVTCLRSSLKPESVDRLVFLAKNL 165          
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Match: UPI00148A2F2A (zinc finger BED domain-containing protein 4-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A2F2A)

HSP 1 Score: 64.3 bits (155), Expect = 2.310e-10
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 1
Query:   13 LGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKRDGLSGDRVADIVFLHESMKH 210
            L WW K S  +P ++ LA+  L + ASS +SERVFS+GG +++KKR  LS   V   +FL+++MK+
Sbjct:  282 LEWWKKNSLFFPRISILAKNFLAIPASSVSSERVFSLGGQILSKKRCRLSHSNVDLFIFLNKNMKY 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138575.2695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7UJ35_CAPTE1.340e-1347.06Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
E2BLX1_HARSA2.330e-1245.45Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A1X7SR93_AMPQE2.180e-1142.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A7S3PTX0_9STRA2.730e-1147.83Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
UPI00148A67FC7.560e-1146.97zinc finger BED domain-containing protein 1-like n... [more]
A0A7S3PUA6_9STRA7.670e-1147.83Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
UPI000B9077868.180e-1144.78uncharacterized protein LOC110854843 n=1 Tax=Folso... [more]
A0A226DDY8_FOLCA1.030e-1044.78Zinc finger BED domain-containing protein 1 n=4 Ta... [more]
UPI0014461CE72.210e-1044.78zinc finger BED domain-containing protein DAYSLEEP... [more]
UPI00148A2F2A2.310e-1045.45zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138575contigH-elongata_contig138575:1163..1384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog7029.ACYPI26298-PA
Preferred nameZBED1
EggNOG free text desc.Zinc finger, BED-type containing 1
EggNOG OGs39X45@33154,3BJIV@33208,3E423@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.601658-CDS-H-elongata_contig138575:1162..13841622929822.601658-CDS-H-elongata_contig138575:1162..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138575 1163..1384 +
1691679172.5821047-CDS-H-elongata_contig138575:1162..13841691679172.5821047-CDS-H-elongata_contig138575:1162..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138575 1163..1384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138575.2695.1prot_H-elongata_contig138575.2695.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138575 1163..1384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138575.2695.1

>prot_H-elongata_contig138575.2695.1 ID=prot_H-elongata_contig138575.2695.1|Name=mRNA_H-elongata_contig138575.2695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
SEDSLGWWAKTSRVYPHVATLARECLTVQASSATSERVFSVGGLLVTKKR
DGLSGDRVADIVFLHESMKHDLW*
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mRNA from alignment at H-elongata_contig138575:1163..1384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138575.2695.1 ID=mRNA_H-elongata_contig138575.2695.1|Name=mRNA_H-elongata_contig138575.2695.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig138575:1163..1384+ (Himanthalia elongata Himel1 dioecious)
TCAGAGGACTCTCTAGGGTGGTGGGCAAAGACCTCCCGAGTGTATCCCCA TGTGGCCACGCTAGCTCGAGAATGTCTTACAGTTCAAGCTTCATCTGCTA CGTCGGAACGAGTTTTCTCTGTAGGCGGACTCCTAGTCACAAAGAAGCGA GACGGTCTGTCTGGAGATCGGGTAGCAGACATTGTTTTCCTTCACGAGAG CATGAAACACGACCTCTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig138575:1163..1384+

>mRNA_H-elongata_contig138575.2695.1 ID=mRNA_H-elongata_contig138575.2695.1|Name=mRNA_H-elongata_contig138575.2695.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig138575:1163..1384+ (Himanthalia elongata Himel1 dioecious)
TCAGAGGACTCTCTAGGGTGGTGGGCAAAGACCTCCCGAGTGTATCCCCA
TGTGGCCACGCTAGCTCGAGAATGTCTTACAGTTCAAGCTTCATCTGCTA
CGTCGGAACGAGTTTTCTCTGTAGGCGGACTCCTAGTCACAAAGAAGCGA
GACGGTCTGTCTGGAGATCGGGTAGCAGACATTGTTTTCCTTCACGAGAG
CATGAAACACGACCTCTGGTAGTCAGAGGACTCTCTAGGGTGGTGGGCAA
AGACCTCCCGAGTGTATCCCCATGTGGCCACGCTAGCTCGAGAATGTCTT
ACAGTTCAAGCTTCATCTGCTACGTCGGAACGAGTTTTCTCTGTAGGCGG
ACTCCTAGTCACAAAGAAGCGAGACGGTCTGTCTGGAGATCGGGTAGCAG
ACATTGTTTTCCTTCACGAGAGCATGAAACACGACCTCTGGTAG
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