mRNA_H-elongata_contig13856.2693.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13856.2693.1
Unique NamemRNA_H-elongata_contig13856.2693.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: D7FJ55_ECTSI (Snurportin-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ55_ECTSI)

HSP 1 Score: 503 bits (1296), Expect = 2.060e-165
Identity = 265/411 (64.48%), Postives = 298/411 (72.51%), Query Frame = 3 
Query:  309 GGETGMSQKAMKRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLG---GYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRV-GGIPGAMAKP----SRGAGANISTADHPAGNRLT-----------APTALGALDRGPR-------KCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGA----------SLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRGGNLNVNDIDA 1433
            GG  G +Q+A++RRDHWANQLCTPEWMLTVPSDLNGAGS VGAGWYVM RPEGKRVLVIS+KGETVARQM G I +RFSSNLPGGS              GYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRF+WVRTKLLEADGPLD V+SRN YRIKPTPYHECDRQGLAHAY+SPVPFIKDGLLF+LK A YQLGPTPLVLLWKD +V RYLG+++ QAVVL+V G   GA ++     SRG   +  +ADH    R             A T  G   RG         K PL+T DGV +GEV  EGS    PQAK  +LLRF L+GAEEEL+++                   +L+G+V GLRFDKRCS  RPMAD+WSKVLFQSRLRR G +++ DIDA
Sbjct:  187 GGSGGAAQRAIRRRDHWANQLCTPEWMLTVPSDLNGAGSTVGAGWYVMTRPEGKRVLVISAKGETVARQMCGAITHRFSSNLPGGSXXXXXXXXXXXXXXGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFYWVRTKLLEADGPLDTVTSRNAYRIKPTPYHECDRQGLAHAYASPVPFIKDGLLFYLKTAHYQLGPTPLVLLWKDASVARYLGIQSDQAVVLKVVGDRSGAESEEERELSRGGETDAGSADHSNSPRTVSLLDGPHKGAFAATGTGGDQRGXXXXXXXAAKYPLITADGVCVGEVGPEGSPTYVPQAKANDLLRFKLTGAEEELLDQSAXXXXXXXXXXXXXXXXXALRGSVQGLRFDKRCSKLRPMADTWSKVLFQSRLRRNGGVSIEDIDA 597
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: A0A835ZF81_9STRA (Snurportin-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF81_9STRA)

HSP 1 Score: 290 bits (741), Expect = 4.650e-86
Identity = 172/374 (45.99%), Postives = 213/374 (56.95%), Query Frame = 3 
Query:  330 QKAMKRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGAN-----ISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRG-GNLNVNDIDA 1433
            +K ++RRD+W+ Q   PEW+L VP DLNGAGS  G GW+VM RPEGKRV++I+++G T+AR M+G I + + S L  G    R+G     G  +LDCVFHELDQTF+V+DMM W  Y LYDC ++FR +W+RTKL EA   +  VS  N YRI+P P ++C  QGLA AY  PVP+I+DGLLF  KA  Y LG TPLVLLWKD   TRY G+ A                 P    G N     ++TAD P       P  L                       EY  + G     K G+LLRF +S AE   VE  G       SL   V GL FDKRCS  RPMADSWSK +FQS +R G G +++ DI A
Sbjct:   91 EKLVRRRDYWSRQFACPEWILDVPEDLNGAGSTEGEGWFVMPRPEGKRVMLIAAEGRTIARTMNGAITHSWHSTLWSGGAHSRKGP----GCTVLDCVFHELDQTFYVIDMMCWSDYSLYDCTSEFRQYWIRTKLAEAQ--VCDVSEWNQYRIRPVPCYDCHPQGLAAAYGDPVPYIRDGLLFVCKAGHYSLGTTPLVLLWKDEATTRYDGIHAT----------------PDPFTGENSLLYPLATADDP-------PVVLQH-------------------STEYSAALG---HLKEGDLLRFFVSSAELA-VESDG-------SLVPVVQGLVFDKRCSPVRPMADSWSKAVFQSAVRTGRGVISIGDIAA 405
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: K3W9X0_GLOUD (Snurportin-1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9X0_GLOUD)

HSP 1 Score: 267 bits (683), Expect = 1.120e-77
Identity = 154/375 (41.07%), Postives = 204/375 (54.40%), Query Frame = 3 
Query:  303 NHGGETGMSQKAMK-----RRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAK--PGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRGG 1406
            N GG+T   +K  +     RR+H+A QL  PEWM+ +P DLNG GS  GAGWYV+ RPEGKR LVI++ G TVAR  SG+I+ RF S LP GS    +  +    YCILDC+FHE D TF+VLD+M WKGY LY+C T+FR +W+R KL E+   +  VS  N YR  P P +E D  G+  AYS   PF+KDGLLF++K A Y+LG +PLVL+WKD N +RY     +  +VLR+ G                        N+ T                  T +G++     +   S    Q +   G+L +F+      +   +P             V GL+FDKRCS  R +ADSW+K+LFQ   R GG
Sbjct:   84 NGGGDTQSKRKTREERVKQRREHFAKQLMVPEWMIDIPRDLNGKGSETGAGWYVLPRPEGKRCLVIANNGITVARIPSGSILKRFPSALPSGS---HKTNASTESYCILDCIFHEHDSTFYVLDVMCWKGYLLYNCTTEFRLYWLRDKLSEST--ISTVSPANPYRFMPIPCYESDEHGICEAYSGTFPFLKDGLLFYMKVAHYELGLSPLVLVWKDANTSRYFVYTEKPNIVLRLDGA-----------------------NQFT------------------TLEGITF----FTADSDFVKQHELSEGDLAKFSFDHGYIDDDNKP------------CVAGLQFDKRCSPQRALADSWTKILFQYNARSGG 396
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: A0A5D6XWR1_9STRA (Snurportin-1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWR1_9STRA)

HSP 1 Score: 256 bits (654), Expect = 3.150e-73
Identity = 146/357 (40.90%), Postives = 195/357 (54.62%), Query Frame = 3 
Query:  342 KRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGA--EEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRGG 1406
            +RR+H+A QL  PEWM+ VP DLNG GS +GAGWYV+ RPEGKR LV+++ G TVAR  SG+I+ +F S LP GS    +  S    YCILDC+FHE D TF+VLD+M WKGY LY+C T+FR +W+R KL E+   +   +  N +R  P P +E D  G+  AYS+  PF+KDGLLF+LKAA Y+LG +PL L+WKD N +RY     + ++VLR                                      LD         T +G++L   + E       +   G+L +F+      + E V R              + GL FDKRCS  R +ADSW+K+LFQ   R  G
Sbjct:  125 RRREHFARQLMVPEWMVDVPRDLNGKGSELGAGWYVLPRPEGKRCLVVANSGLTVARIPSGSILKKFPSALPSGS---HKTNSSTEAYCILDCIFHEHDSTFYVLDVMCWKGYLLYNCTTEFRLYWLRDKLSES--AISTATPANPFRFLPVPCYESDEHGIMEAYSTTFPFLKDGLLFYLKAAHYELGLSPLALVWKDANTSRYFVYTEKPSIVLR--------------------------------------LDDASN---FTTLEGITLFSADPEFLQ--QHELSEGDLAKFSFEHGYIDGEQVPR--------------LTGLTFDKRCSPQRALADSWTKILFQYNARSSG 419
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: W2PNQ8_PHYPN (Snurportin-1 n=10 Tax=Phytophthora TaxID=4783 RepID=W2PNQ8_PHYPN)

HSP 1 Score: 248 bits (632), Expect = 1.080e-70
Identity = 134/359 (37.33%), Postives = 199/359 (55.43%), Query Frame = 3 
Query:  330 QKAMKRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRGG 1406
            ++  +RR+H++ QL TPEW++ +P DLNG GS +G GWYV+ RPEGKR LV+++ G T+AR  SG+I+ +F S LP GS    +      GYCILDC+F E ++TF+VLD+M WKGY LY+C T+FR +W+R KL  ++G   + +  N +R  P P +E D++G+  AYS+  PF+KDGLLF++KA  Y++G +PL L+WKD N +R+    A+ ++VLR  G                   D+                        +T +G++L     +       +   G+L  F+    E +  + P             + GL F KRCS  R + DSW+K+LFQ   R GG
Sbjct:   74 ERVKQRREHFSKQLMTPEWLIDIPKDLNGNGSLLGEGWYVLPRPEGKRCLVVANGGNTIARIPSGSILKKFPSALPCGSHKTNKSND---GYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKL--SEGATGMTAPANPFRFLPVPSYESDQEGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDANTSRFFVYSAKPSIVLRFEG-------------------DN----------------------EFVTLEGIALFTANQDFIQ--EHELNEGDLASFSFEQTEVDESQTP------------HLTGLTFVKRCSPQRALPDSWTKILFQYNARSGG 372
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: M4BKZ6_HYAAE (Snurportin-1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKZ6_HYAAE)

HSP 1 Score: 247 bits (631), Expect = 2.110e-70
Identity = 134/359 (37.33%), Postives = 196/359 (54.60%), Query Frame = 3 
Query:  330 QKAMKRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRGG 1406
            ++  +RR+H++ QL TPEW++ VP DLNG+ S +G GWYV+ RPEGKR LV+++ G TV R  SG ++ +F S LP GS    +      GYCILDC+F E ++TF+VLD+M WKGY LY+C T+FR +W+R KL  ++G    V+S N +R  P P +E D  G+  AYS+  PF+KDGLLF++KA  Y++G +PL L+WKD+N +R+    A+ +++LR+ G                                         +    T +G+ L   E +       +   G+L  F+    E +  + P             + GL F KRCS  R + DSW+K+LFQ   R GG
Sbjct:   86 ERVKQRREHFSRQLMTPEWLIDVPKDLNGSSSALGEGWYVLPRPEGKRCLVVANGGMTVVRIPSGNVLKKFPSALPNGSHKTNKSSD---GYCILDCIFQEQNETFYVLDVMCWKGYLLYNCTTEFRLYWMRDKL--SEGVTATVASANPFRFLPVPCYESDSTGIMTAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDSNTSRFFVYSAKPSIILRLEG-----------------------------------------EKEFATLEGIVLFTAEEDFVQ--QHELSDGDLASFSFEQHEVDENQAP------------RLTGLTFVKRCSPQRALPDSWTKILFQYNARSGG 384
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: A0A6A3SJ83_9STRA (Snurportin-1 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SJ83_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.390e-70
Identity = 141/355 (39.72%), Postives = 192/355 (54.08%), Query Frame = 3 
Query:  342 KRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRGG 1406
            +RR+H+A QL TPEW++ VP DLNG+GS +G GWYV+ RPEGKR LV+++ G TVAR  SG I+ +F S LP GS    +      GYCILDCVF E D TF+VLD+M WKGY LY+C T+FR +W+R KL  ++G    V+  N +R  P P +E D  G+  AYS+  PF+KDGLLF++KA  Y++G +PL L+WKD   +R+ G  A+ ++VLR+ G                        N                     T +G+ L   + +       +   G+L  F     E E+ E     L G          + F KRCS  R + DSW+K+LFQ   R GG
Sbjct:   72 QRREHFAKQLMTPEWLIDVPKDLNGSGSALGEGWYVLPRPEGKRCLVVANGGSTVARIPSGGILKKFPSALPCGSHKTNKSSD---GYCILDCVFQEQDATFYVLDVMCWKGYLLYNCTTEFRLYWMRDKL--SEGATATVTPANPFRFLPIPCYESDPAGIMAAYSTTYPFLKDGLLFYMKAGHYEMGLSPLALVWKDAKTSRFYGYSAKPSIVLRLEG-----------------------DNEFA------------------TLEGIFLFTADEDFIQ--QHELTEGDLASFAFE--EHEMDENQTPHLTG----------MTFVKRCSPQRALPDSWTKILFQYNARSGG 366
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: A0A0P1AJ51_PLAHL (Snurportin-1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ51_PLAHL)

HSP 1 Score: 244 bits (623), Expect = 1.970e-69
Identity = 133/355 (37.46%), Postives = 197/355 (55.49%), Query Frame = 3 
Query:  342 KRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKVLFQSRLRRGG 1406
            +RR++++ QL TPEW+L VP DLNG GS +G GWYV+ RPEGKR LV+++ G T+AR  SG I+ +F S LP GS    +      GYCILDC++ E ++TF+VLD+M WKGY LY+C ++FR +W+R KL  ++G    VSS N +R  P P +ECD+ G+  AYS+  PF KDGLLF++KA  Y++G +PL L+WKD+  +R+     + ++VLR+                                          +    LT +G++L   + +       +   G+L  F+    E++  + P             + G+ F KRCS  R + DSW+K+LFQ + R GG
Sbjct:   77 QRREYYSKQLMTPEWLLDVPKDLNGMGSALGEGWYVLPRPEGKRCLVVANGGNTIARIPSGNILNKFPSALPCGSYKTNKSSD---GYCILDCIYQEQNETFYVLDIMCWKGYLLYNCTSEFRLYWMRDKL--SEGLTATVSSANPFRFLPIPCYECDQAGIMAAYSTMYPFHKDGLLFYMKAGHYEMGLSPLALVWKDSMTSRFFS-STKPSIVLRL-----------------------------------------EQNNEFLTLEGIALFAADQQYIHQF--ELSEGDLASFSYDQYEDDDKQPP------------HLTGMTFVKRCSPLRALPDSWTKILFQLKTRSGG 370
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: A0A2D4BS52_PYTIN (Snurportin-1 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BS52_PYTIN)

HSP 1 Score: 242 bits (618), Expect = 2.290e-68
Identity = 145/380 (38.16%), Postives = 198/380 (52.11%), Query Frame = 3 
Query:  342 KRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRI-----------------------KPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVH--GLRFDKRCSMFRPMADSWSKVLFQSRLRRGG 1406
            +RR H+A QL  PEWM+ VPSDLNG GS +GAGWYV+ RPEGKR LV++S G T+AR  +G++  RF S LP GS      G     YCILDC+FHE D+TF+VLD+M WKGY LY+C T+FR+FW+R KL  ++G     S+ N +R                        +P P +ECD QG+  AY++P PF+KDGLLF++K+A Y LG TPLVL+WKD   +R+     +  +VL++                        A N+ T                  T +G++L   +       A +   G+L +F+                 G  +   T H  GL F +R S  R + DSW+K+LFQ   R GG
Sbjct:   95 RRRAHFAQQLLVPEWMVDVPSDLNGKGSQIGAGWYVVPRPEGKRCLVVASHGLTIARTQAGSVFKRFPSALPNGSRKTNGSGDA---YCILDCIFHEYDKTFYVLDVMCWKGYLLYNCTTEFRWFWLRDKL--SEGTSATASTANPFRFLVGYYVSDAAQCFATDDLVMSAFQPLPCYECDEQGVIDAYTTPFPFLKDGLLFYMKSAHYDLGLTPLVLVWKDAKCSRFHVYTEKPTIVLQLD-----------------------ADNKFT------------------TLEGIALWTPDPAFLQ--ANELTTGDLAKFSFDE--------------GYFTSDQTPHLMGLTFLQRSSPQRALPDSWTKILFQYNARSGG 412
[Close]
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Match: A0A485L567_9STRA (Snurportin-1 n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L567_9STRA)

HSP 1 Score: 242 bits (617), Expect = 2.290e-67
Identity = 144/346 (41.62%), Postives = 190/346 (54.91%), Query Frame = 3 
Query:  345 RRDHWANQLCTPEWMLTVPSDLNGA--GSPVGAGWYVMARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGGYCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGPLDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQLGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANISTADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQAKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRPMADSWSKV 1376
            RRDH++NQL  PEWM+ VPSDLNG   G   G GWYV+ RP+GKR LV+SS G T+AR  SG+I+ +F S+LP GS     G      YC+LDC+FHE D TF+VLD+M WKGY LYDC  +FRF+W+  KL E    +D VS+ N  R +P PY+ECD QGL  AY    PF KDGLLF+ KA  Y +G +PLVLLW+D + + Y   +   ++V+RV                                       +    C  +T D + L  +    +     +  PG+LLRF ++      V+    D     S+Q  V GL F KRCS  R +ADSW+K+
Sbjct:  173 RRDHFSNQLMHPEWMVDVPSDLNGTKKGGANGEGWYVLPRPDGKRCLVVSSSGTTIARTSSGSILKKFPSSLPCGSRKTNIGQDQ---YCVLDCIFHEADDTFYVLDVMCWKGYLLYDCTAEFRFYWLHDKLSETT--VDKVSAANPCRFQPIPYYECDVQGLQMAYDMTFPFTKDGLLFYCKAGLYTVGLSPLVLLWRDRHTSLY---DNSLSLVMRV---------------------------------------QDDLAC--VTLDNIVLHTLAP--AFAAHEEITPGDLLRFDVAS-----VQWRARDDSTDVSVQ--VTGLTFQKRCSAQRGLADSWTKL 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13856.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ55_ECTSI2.060e-16564.48Snurportin-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835ZF81_9STRA4.650e-8645.99Snurportin-1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
K3W9X0_GLOUD1.120e-7741.07Snurportin-1 n=1 Tax=Globisporangium ultimum (stra... [more]
A0A5D6XWR1_9STRA3.150e-7340.90Snurportin-1 n=1 Tax=Pythium brassicum TaxID=14850... [more]
W2PNQ8_PHYPN1.080e-7037.33Snurportin-1 n=10 Tax=Phytophthora TaxID=4783 RepI... [more]
M4BKZ6_HYAAE2.110e-7037.33Snurportin-1 n=1 Tax=Hyaloperonospora arabidopsidi... [more]
A0A6A3SJ83_9STRA3.390e-7039.72Snurportin-1 n=5 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A0P1AJ51_PLAHL1.970e-6937.46Snurportin-1 n=1 Tax=Plasmopara halstedii TaxID=47... [more]
A0A2D4BS52_PYTIN2.290e-6838.16Snurportin-1 (Fragment) n=1 Tax=Pythium insidiosum... [more]
A0A485L567_9STRA2.290e-6741.62Snurportin-1 n=2 Tax=Aphanomyces stellatus TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13856contigH-elongata_contig13856:230..7939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score507.3
Seed ortholog evalue7.6e-141
Seed eggNOG ortholog2880.D7FJ55
Preferred nameSNUPN
KEGG koko:K13151,ko:K14544,ko:K18038
KEGG Pathwayko03008,ko03013,map03008,map03013
GOsGO:0000339,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0005846,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031967,GO:0031975,GO:0032991,GO:0034518,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.snRNA import into nucleus
EggNOG OGsKOG3132@1,KOG3132@2759
EC3.1.3.48
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_000170.1
Exons9
Model size2545
Cds size1386
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.2823853-UTR-H-elongata_contig13856:229..12361622929822.2823853-UTR-H-elongata_contig13856:229..1236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13856 230..1236 -
1691679172.4246786-UTR-H-elongata_contig13856:229..12361691679172.4246786-UTR-H-elongata_contig13856:229..1236Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13856 230..1236 -
1622929822.445993-UTR-H-elongata_contig13856:7787..79391622929822.445993-UTR-H-elongata_contig13856:7787..7939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13856 7788..7939 -
1691679172.5318656-UTR-H-elongata_contig13856:7787..79391691679172.5318656-UTR-H-elongata_contig13856:7787..7939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13856 7788..7939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.298322-CDS-H-elongata_contig13856:1236..14011622929822.298322-CDS-H-elongata_contig13856:1236..1401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 1237..1401 -
1691679172.4352727-CDS-H-elongata_contig13856:1236..14011691679172.4352727-CDS-H-elongata_contig13856:1236..1401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 1237..1401 -
1622929822.317117-CDS-H-elongata_contig13856:1917..20881622929822.317117-CDS-H-elongata_contig13856:1917..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 1918..2088 -
1691679172.4543502-CDS-H-elongata_contig13856:1917..20881691679172.4543502-CDS-H-elongata_contig13856:1917..2088Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 1918..2088 -
1622929822.3385298-CDS-H-elongata_contig13856:2493..27181622929822.3385298-CDS-H-elongata_contig13856:2493..2718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 2494..2718 -
1691679172.467419-CDS-H-elongata_contig13856:2493..27181691679172.467419-CDS-H-elongata_contig13856:2493..2718Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 2494..2718 -
1622929822.354086-CDS-H-elongata_contig13856:2858..30441622929822.354086-CDS-H-elongata_contig13856:2858..3044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 2859..3044 -
1691679172.4762793-CDS-H-elongata_contig13856:2858..30441691679172.4762793-CDS-H-elongata_contig13856:2858..3044Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 2859..3044 -
1622929822.3686044-CDS-H-elongata_contig13856:3334..34511622929822.3686044-CDS-H-elongata_contig13856:3334..3451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 3335..3451 -
1691679172.485578-CDS-H-elongata_contig13856:3334..34511691679172.485578-CDS-H-elongata_contig13856:3334..3451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 3335..3451 -
1622929822.3841813-CDS-H-elongata_contig13856:3976..41121622929822.3841813-CDS-H-elongata_contig13856:3976..4112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 3977..4112 -
1691679172.494926-CDS-H-elongata_contig13856:3976..41121691679172.494926-CDS-H-elongata_contig13856:3976..4112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 3977..4112 -
1622929822.398801-CDS-H-elongata_contig13856:4506..46061622929822.398801-CDS-H-elongata_contig13856:4506..4606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 4507..4606 -
1691679172.5050337-CDS-H-elongata_contig13856:4506..46061691679172.5050337-CDS-H-elongata_contig13856:4506..4606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 4507..4606 -
1622929822.413541-CDS-H-elongata_contig13856:6851..71191622929822.413541-CDS-H-elongata_contig13856:6851..7119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 6852..7119 -
1691679172.5124426-CDS-H-elongata_contig13856:6851..71191691679172.5124426-CDS-H-elongata_contig13856:6851..7119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 6852..7119 -
1622929822.4302602-CDS-H-elongata_contig13856:7769..77871622929822.4302602-CDS-H-elongata_contig13856:7769..7787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 7770..7787 -
1691679172.5218952-CDS-H-elongata_contig13856:7769..77871691679172.5218952-CDS-H-elongata_contig13856:7769..7787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13856 7770..7787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13856.2693.1prot_H-elongata_contig13856.2693.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13856 1237..7787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13856.2693.1

>prot_H-elongata_contig13856.2693.1 ID=prot_H-elongata_contig13856.2693.1|Name=mRNA_H-elongata_contig13856.2693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=462bp
MDFDIKVAAADHNDPDRTSGAVMRTSTGQASETDNSNSLKSEKYKNTSRR
NHGGETGMSQKAMKRRDHWANQLCTPEWMLTVPSDLNGAGSPVGAGWYVM
ARPEGKRVLVISSKGETVARQMSGTIIYRFSSNLPGGSTAGRRGGSMLGG
YCILDCVFHELDQTFFVLDMMAWKGYPLYDCNTDFRFFWVRTKLLEADGP
LDIVSSRNVYRIKPTPYHECDRQGLAHAYSSPVPFIKDGLLFHLKAAQYQ
LGPTPLVLLWKDNNVTRYLGVEAQQAVVLRVGGIPGAMAKPSRGAGANIS
TADHPAGNRLTAPTALGALDRGPRKCPLLTCDGVSLGEVEYEGSSGIAPQ
AKPGELLRFTLSGAEEELVERPGADLLGGASLQGTVHGLRFDKRCSMFRP
MADSWSKVLFQSRLRRGGNLNVNDIDASCFASTGQTAIGADLSLRKLCEE
QGGIEDDDMTL*
back to top

mRNA from alignment at H-elongata_contig13856:230..7939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13856.2693.1 ID=mRNA_H-elongata_contig13856.2693.1|Name=mRNA_H-elongata_contig13856.2693.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7710bp|location=Sequence derived from alignment at H-elongata_contig13856:230..7939- (Himanthalia elongata Himel1 dioecious)
AGGCACGGAGGGATCTATCGAATCACGCCCGTCTTTTGGCTTCGTTATCC
ACCAAAAACTCTGAATCGCCCGATTTCGAGAACGATAATGGATCATCCCG
GACAGAGGAAGGCTTCGAGTCGTGGACACCTGGGTTTCAGGCTGCCGAAG
ACATGGACTTCGACATAAAGGTGACCGGCCAAGAGTCACCCCCAATCGTC
TACACAAAAAGTCTCATTTTCTTCCTACCCCAATTTGACAATAATTTCAC
AATGTAAAATAAATTCTGGCTGGTTGCAGTAAGAAGCCTCCACATCTTGA
GCCTCCGCTCTCCCAGCAGATAAAGAAATGAAGTAATTTCGGGAGGAAAA
TCATGTCTATATTTCACGCTGTACAATTAACCCTTTTGGAACTGAATTTC
ATTTTTTATATTGAATTTAGGATTAAAAAACAAACCGAGTTCCATAAGGG
TTAAGGTTTGTGTGTGGAAATGTTCCCCTCCATCAAGATAGTGTAACCGC
CGCACATTCATTTTTGCACGGAACGCCACCGTGGCTGGTTCGACGGGGAT
AGGATGGTATGATATGAGATGGGACCTGTATGGGGAGGGATGAGATGGGA
TGAAATGGGACATGTATGGGATGGGATGAGTTGAGATGGGACCTGTACGA
CGTGGTGAGCAGTATGTGTCCTAAATAAATGCCTTTGCACAGGATCTTTT
CTCTTGAGAGCTGCCCACTGTTGATGCTGCTCCTCACATGGGACCACCGC
GATCGCGAGGTCGCCCTAAGCTCTTGCCAAAAGCTACTCCTGTACTTCCA
TACTTGGCGGTTGAAAGCAGGTGGCTGCAGCAGATCACAATGACCCCGAC
AGAACGAGCGGGGCGGTGATGCGGACGTCGACTGGTCAAGCCTCAGAGAC
TGACAACAGTAACAGCCTCAAAAGCGAAAAATATAAAAATACTAGCCGAA
GAAATCACGGCGGCGAGACCGGCATGTCGCAGAAGGCGATGAAGCGGCGA
GATCACTGGGCCAATCAGCTGTGCACGCCGGAATGGATGCTGACCGTGCC
GAGCGACCTGAACGGTGCCGGGAGTCCCGTGGGTGCCGGTAAGTAAAAAA
AGCGGGAAACTCGCCGCTCAAAAATATCGGATATTTGGGAGGCATGGTAA
CTGCGACCATATCCATGGCGGGTGCAACCATCTGAGTAAAGCTTTTACAA
GCTTTGTGCCCCACGCTTGCCGCGCGCAGTCGGGGATTGGACACGGACAC
AGTTCGCGTTCTCCCGGGACACGACACATGTTTTCATTGTGCCGGGAGAG
CCTGTTTTTTTCTTTGTTGTTTTTTTCTTCTTAAGGCTGTAGAGTTAAAA
TTTCCCATCTTGGCCTGAACACGAAAATTCCGATTTTGTTACGCTTATTT
GTGGATCGAGATTTTGATTTTGATTTTTGTCGCACGTTCTTGTTTTTTTT
TTAATTTAAAAAAAAAACTTGAAACTATTCCAACCCTCCGAGCATCCACG
CCTTCTTATCACTTTTTTTAATTTTTGCTCGGAAACCTCTCTGCATGTAA
ATTTGGAGCTTATTAGAACGATTATCGCTTCGCAGAGGTATGGGTGGAGC
TGTGAGATCCATAGCCGAAGCCATCATATCTCCGAAAATTGACACTATAT
AGGCACGATATAAATATGCCAATATGCCAAACATCTGACGTCGCTTTCAT
GGTCAAATTAATCGCTGTCTATGTGCTTACTCTAAGGCGATGTAGTATTA
GTACCAGCCAGGGGTCGAAATATGTACACACTCGAGCCTAACGATAGTTA
GTCCCTTTGACTTCACCATTCGTAGTGTGACAAAGGTTCTCTTATTGTAG
TAATAGTTTAAAATAGTACACCCACTAGATGTTAAAAAATGAAAAATGTT
CTTCCACCGTAGATATAGGCTATGCTTGTTGTACCATGTGCTCTTCCTCC
GCTCGACAGTCGATAGTCGATATGTGCTTAGCCAGCGCTAGAGTCTATGC
CTTGGTAGGCTTTTCCTCCCTCCTTAATCTTGAACCACTATTATTACTGT
ATTAGTATTACTGTATTAGTATTACTATATTAGTATTACTGTATTAGTAT
TACTGTATTAGTATTAATGTATTAGTATTACTGTAATAGCATTACTGTAT
TGGTATTACTGTATTAGTATTACTGTATTAGTATTACTGTAGTAGTATTA
CTGTATTAGTATTACTATTGTGGCCTACTTTATTGGGAAGATTCTTTGTT
TATAGGTAGTAATGTACGCACTCGAACCTGACGACAGCTGGTCACCCTTG
ACTTAACTATTCGTGATACAATGAAGTATATAGGATATAATGTGGATGTT
CGGAGGGTTTGATTGAGTTCGTATGTTTTTTAGAAGAAAAAAAATGGGCT
TCGCCTCTTCAGCCGCCTGCCTGTCAGGTAGCCTTTCCCCAAACTCTGCA
CTCAGCAACGCGATAGCCACTAGCCTTCCCGCCCTTGGAAAATGTAGCAA
TTTACGTCGGTCGTGCTTCGACACGAGCTGCCACGTGAAACCCTGTCAGA
GCGGGGCTTTGCATTCATTTGAGCTCAGAGCTAACTGAAGACGGTATGCG
TCGACGGATATTCTGAGTTGACTGCCATCGCCATTGGCCATTTTGTAAAA
ATATAAAAAGCATATTTTTTCACGATAAGCTCGCTACCAATAACTCTGTG
GGACCCGTAAATGACAACGCGGTCTGGAAATTCCTAAACTGCCCATGAAG
AAGATGTCCCTCAGCTCCGGACCCCAAGGCAAGGGTTCGCCAATTGTGTG
GCTCGCTTAACACGTGCTGCCAAGCAAAGCGCGTAAAAGCCTTGCAGGCT
GCAGCGTACAAATTACCATCTTCTCTCGATTTCGTTTTAACTCTTAATAT
GAGTAGCCAATGTTTTAACTCTTAATATGAGTAGTCAATGTTTTAACTCT
TAATATGAGTAGTCAATGTTTTAACTCTTAATATGAGTAGTCAATGTTTT
AACTCTTAATATGAGTAGTCAATGTTTTAACTCTTAATATGAATAGTCAA
GTTTTAACCTCAGCGATTCGATTCCGAAGCTTACATTCGCGTTCCCTAGA
ATCGGGATTGTATTTTCAGAGGATCGGGAATTTCGTTTCCCAATCCCTAC
TTACCAACATCTGATCTTGTATCCAATGGAAAACCGTCGTGGCTTCCGAT
CCTAAGATTTCTGAACCTGGGGTGACGGTTACTCAGAATTTCCGAGTTTG
TTTGGTTAAACAATGTACCTGAACACCGACCCTATCACAAACACGGCTAG
TTTTTGTGTCTTGCCGGTTCGATTGTGGTCCAGGATGGTACGTCATGGCA
CGCCCCGAGGGCAAGCGAGTGCTAGTCATCTCGTCCAAGGGGGAGACGGT
TGCTAGGCAGATGAGCGGGACAATAATCTACAGGTGTGCATTGTCATATA
CATTGACTGCAAAAATATCAAGAAGGGCTCAAAAAGGGCTACGGGTTTCC
CTAGGCCTTTTTGAAGTTTTACTTTGCCGCCGCAGACCAAGCCTCAAAGA
CGAAATAACCCCCCGTTTCCCATTTCACCCCGGCCTTGCTAGCTGCTCGC
GTGCTGGGGGTATGATTTGCATGATGATTAAAACATATTCGATTTTCACC
GTCTTGCTTTGGAATAGAGACGAGGCGATGCGATGAGGTAGAAACGTTTG
CGGAAGTTCAACATTGTGCCGTCATACGGCCGATTGCGAGTGGCCTCACG
CAATGCTATCGCCATGCCACAGTCGCTCTCTCCGTTGTAGCGTTAGCATT
TTGAGGCGTTTGTCTCTTTTCCCCCAGGTTCAGCTCCAATCTCCCGGGGG
GTTCGACGGCGGGTCGACGCGGAGGGTCCATGCTAGGGGGCTACTGCATT
CTAGATTGTGTATTCCATGAGCTTGATCAAACATTCTTCGTTCTCGACAT
GATGGCGTGGAAGGTTCGACGATATTGCCGGGAACACGAGGGGTAGGGAT
ATGATGCTGTTGGGTAGACTTTCCGGTAGAAATTTATCTCTCGATCCGAG
GATATTCCTGCTCTCGAGACGCTCAGCGATGTGTGCGAAATATCTACAAA
ATCTTCGATTCGCTTCGTCTGTTTGCTAACGAATCTTCGTTATCTTTTTC
GATGTGTTGATAGTTTACACCATGTTGAGAGATACTTTGCGCAAGGTCCA
AACATCTTCTTTCCAAGCCATTGCCGTGTCATGCGCCCAACCACTTTGGT
AGCCGTGCCTGAGTTTCGGGGGCAACACTAACAAGGCGCTCCGCTGTGTC
GAATTATGAACTGGATTGCTCAGCGGTGGCACTTTTACCGACACTCCTCC
TTCGGCCTCGTGACGTTAGCTCACTATTAATCCCTTCTCCAGAGGTGGGA
GTCAAATACACGTCACTCTTTGTAGCCTGACCGTTTGCGCTCATCGACAC
ATTACCACTATCCGAACTGCTTTGGCCACCATCGACAGGGCTACCCGTTG
TACGACTGCAACACAGACTTCAGATTTTTCTGGGTGCGGACCAAGCTCCT
GGAAGCTGACGGGCCGCTCGATATTGTCAGTTCGAGAAACGTTTACCGGA
TAAAGGTGCCAGTTATTTCCTATAGCGACTAGTTGCTTGTCGACGTCGAG
AGCTCTCAGCGACAAGTTGCCCTACAGCTGCCACGGGCTTCCGCGCGAAT
CGCCCGTGGGTAAAACAATCTCGGCTTGTTAGACTTATCGCTAGTCGATC
CTGTCAGAAAACAGTCAAAGAAAGAGAGCGTTGTATTTTACGAACATATG
GTGGTTGGGGTACACTGACTACGGTCGCTTTTTTGTATGGGATGCAACTT
AAAAGGTAAATCAACCCGCGCCTTTTTCTGCCTTGTTCTCTCTAGCCGAC
GCCGTATCACGAATGTGATAGGCAAGGGCTGGCGCATGCTTACTCATCTC
CCGTCCCGTTCATCAAGGATGGCCTCCTCTTTCATCTCAAGGCCGCACAG
TACCAGCTGGGCCCAACCCCCCTGGTGCTCCTATGGAAGGACAACAACGT
GACGCGGTATCTCGGGGTGGAGGCACAGCAGGTAAATTGAATGTCTCTGG
CTTTAAGTTCGACGTCGGTTTGTTTCTCGTGAGAGGGCGAGTGCGAATGG
CTTGCACGAGGCTGATAACCTATTACCATCCACCTCACCCCTCCCCGCTC
CTGCTTCCATTCACCCCCCAGGCTGTAGTTTTGCGGGTGGGAGGCATCCC
TGGGGCAATGGCTAAACCATCTCGTGGAGCAGGAGCAAATATTTCTACAG
CGGATCATCCCGCGGGAAACCGTTTGACTGCTCCAACGGCCCTCGGCGCG
TTAGATCGTGGCCCGAGAAAATGCCCTCTGCTGACTTGCGACGGTGTATC
TCTAGGGGAAGTGGAGTACGAGGGTAGCTCTGGCATCGCCCCTCAGGTGG
AAACAAAAACGTTGTTTATGACACGGTCACACGCAGCAACTACCGTCCTT
CTCAGCTTCAGTATTTGAATCACCTAGTCGCAGGATGTGGGAGATAAGTA
AAGCGCTGGCCTGCATTTGTTGTTCTATGATTGCATGCTGACTTTCGCTA
GCTACTAATGGTCTAATCTCGGGGTAGAAAAGGGTGTCGCGCAGCCCCCC
CGCATGAATTGAAGGATACTTCAGCGAACGTGCTTAGAGCTGGTGCGTGG
TACTCCCCAGGTATTTGTAGTTGGAAGCGGCGCCAACATGCGTGGACCCC
CCGGTGAACAGGATATCCTCAATAAGATGCTATTAATAGTACAAGAACAA
TAAACCTTGCTCCGCCGTGGACATCGTATTCTCTCCGACTCCTTCACCCA
GGCGAAGCCGGGCGAGTTGCTACGCTTTACCCTCTCGGGGGCCGAGGAGG
AGCTTGTCGAGCGCCCGGGAGCAGACCTACTGGGAGGTGCAAGTCTTCAA
GGCACAGTGCATGGACTTCGTTTCGACAAGCGTTGTAGCATGTTTCGGCC
GATGGCAGACAGTTGGAGCAAGGTAATAAGCCTTGGAGAACATAATGTAA
ACTTTTCCGCTTAGCCGCACCCTTCGCCTGACCATTTTTCGGTTTTCGCC
AGGCTCAGCATAGGGCTCTGTTTTGACATAGTTTTGATAGATGTATGTGT
TGGAACTGACATTTTTATTTGAAAATATATGAATTCATTAAGACCTTTCG
AACATCCACGCCTTCTTAGCACAATGAGAGGTGTAGTCCAGGGGACCAAC
TATCGTCAGGTCCGAATGTGGACATTACTACATTTAAGCACAAAATCGTC
ATATGTGATTATTCGTCTTCCCCGGTTGTAAATTCATCGGGTCAACGGTT
AATAATGTCGGTGATCCCGTCATTGTCCCGTTGCTGGAAATCCTCACGGC
GAGCGCATGCCCACCATAGACATCCTCACGGCGAGTTGTTGGTAAGTAGA
AGTAGCTTCGTTACTTTCGCTAAGAAGTAACGGAAAGTCGTATCCTCAAA
ACCTGCTGATCGTCGCTATATGCTCTTTGGATGTACAGGTGCTGTTCCAG
AGCCGGCTGCGACGGGGCGGCAATCTGAACGTCAACGATATCGACGCGAG
CTGTTTCGCCTCGACCGGTCAAACCGCTATTGGAGCCGACCTTTCCTTGC
GTAAACTCTGCGAAGAACAAGGAGGCATCGAAGATGATGATATGACGTTA
TAGTGCATGTAGTGGTGGCTAGAGGTCGTAATGTTTCGTGCAGGGGTGCC
CTTTGGACATGACCTGAACAGTGCTGATAGCGCATTAGACTTGGCGGCCC
TCCCTCGAATAAGGTTGTGAGTCGTTCGTGCATTTGAAACGCGGGCACTA
CCCTTCACTCCAAAGTCATGAGCGTTACCGTAGTGGAACGACAACCCTCC
AACATTTTTAGACGCTCTGCGCGTTACAACCCGTAATCGTAATAGCTTTT
AGTCAGCAAGCGATGCTCGCTGGTGAGTACCACGAACGTAGGAGTGGCTC
TCGATCTGTCGAAAAGAAAATGTGCTCGACCCGAGCTCATGCCGACATGG
TATATTTACTATTTCCCTCTTGGTCAGCCTTGTAGCTATGCGTTTGAATG
CGACCAACATGAATATTCTACTCCCCCTTAAAGTTTTAAACATCCGTGTC
TAGAAAAAATGTCTGAACTGGAAAAGGCGTGGCTGTTTTACTGGGTTACG
TAAGCCGTTTAGCGTAGGATTCGCAATCAGCCATTGCTGAGTTCATATGT
TTTTAATAATAATACCGTCCTCTCCTGCGGTTGATAGCTTGTTAAATGGA
ACGGTACAGCCGGTTTTGCATTCGCCGGTGAGGTGGTTCAATGTCTCACT
ATTAATAGCTGCATCACGTGGTTTCTCTCGGGATTCCCAGTAGGGCTGCT
TATGTACAGCAAAGCTGGACGTTCTCTCCAGACTTCCTCTGTTGTCATTG
CGTTTGATTGCTCAGTCGTAATATGTGACTTCAAACGGCGCTTGTAGTCA
CAAAAAAGTGAATGGTGATACCGATTTCACCTCTCCTATCCCACGTGTTT
GGTTGTGGTTTCGGCACAAACGGGCGATCTATTTTTAGTCACATTAGCAT
CGGGAATTAATCCCGTCAAGTTCCGTAAGAGCCCGAGCTGACGGTGACTC
ACTTACGTCCTTGGTTGTATGAAACGTAGTATAATGATTACATGTCGGAT
GAAGATGCAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13856:230..7939-

>mRNA_H-elongata_contig13856.2693.1 ID=mRNA_H-elongata_contig13856.2693.1|Name=mRNA_H-elongata_contig13856.2693.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2772bp|location=Sequence derived from alignment at H-elongata_contig13856:230..7939- (Himanthalia elongata Himel1 dioecious)
ATGGACTTCGACATAAAGATGGACTTCGACATAAAGGTGGCTGCAGCAGA
TCACAATGACCCCGACAGAACGAGCGGGGCGGTGATGCGGACGTCGACTG
GTCAAGCCTCAGAGACTGACAACAGTAACAGCCTCAAAAGCGAAAAATAT
AAAAATACTAGCCGAAGAAATCACGGCGGCGAGACCGGCATGTCGCAGAA
GGCGATGAAGCGGCGAGATCACTGGGCCAATCAGCTGTGCACGCCGGAAT
GGATGCTGACCGTGCCGAGCGACCTGAACGGTGCCGGGAGTCCCGTGGGT
GCCGGTGGCTGCAGCAGATCACAATGACCCCGACAGAACGAGCGGGGCGG
TGATGCGGACGTCGACTGGTCAAGCCTCAGAGACTGACAACAGTAACAGC
CTCAAAAGCGAAAAATATAAAAATACTAGCCGAAGAAATCACGGCGGCGA
GACCGGCATGTCGCAGAAGGCGATGAAGCGGCGAGATCACTGGGCCAATC
AGCTGTGCACGCCGGAATGGATGCTGACCGTGCCGAGCGACCTGAACGGT
GCCGGGAGTCCCGTGGGTGCCGGATGGTACGTCATGGCACGCCCCGAGGG
CAAGCGAGTGCTAGTCATCTCGTCCAAGGGGGAGACGGTTGCTAGGCAGA
TGAGCGGGACAATAATCTACAGGATGGTACGTCATGGCACGCCCCGAGGG
CAAGCGAGTGCTAGTCATCTCGTCCAAGGGGGAGACGGTTGCTAGGCAGA
TGAGCGGGACAATAATCTACAGGTTCAGCTCCAATCTCCCGGGGGGTTCG
ACGGCGGGTCGACGCGGAGGGTCCATGCTAGGGGGCTACTGCATTCTAGA
TTGTGTATTCCATGAGCTTGATCAAACATTCTTCGTTCTCGACATGATGG
CGTGGAAGGTTCAGCTCCAATCTCCCGGGGGGTTCGACGGCGGGTCGACG
CGGAGGGTCCATGCTAGGGGGCTACTGCATTCTAGATTGTGTATTCCATG
AGCTTGATCAAACATTCTTCGTTCTCGACATGATGGCGTGGAAGGGCTAC
CCGTTGTACGACTGCAACACAGACTTCAGATTTTTCTGGGTGCGGACCAA
GCTCCTGGAAGCTGACGGGCCGCTCGATATTGTCAGTTCGAGAAACGTTT
ACCGGATAAAGGGCTACCCGTTGTACGACTGCAACACAGACTTCAGATTT
TTCTGGGTGCGGACCAAGCTCCTGGAAGCTGACGGGCCGCTCGATATTGT
CAGTTCGAGAAACGTTTACCGGATAAAGCCGACGCCGTATCACGAATGTG
ATAGGCAAGGGCTGGCGCATGCTTACTCATCTCCCGTCCCGTTCATCAAG
GATGGCCTCCTCTTTCATCTCAAGGCCGCACAGTACCAGCTGGGCCCAAC
CCCCCTGGTGCTCCTATGGAAGGACAACAACGTGACGCGGTATCTCGGGG
TGGAGGCACAGCAGCCGACGCCGTATCACGAATGTGATAGGCAAGGGCTG
GCGCATGCTTACTCATCTCCCGTCCCGTTCATCAAGGATGGCCTCCTCTT
TCATCTCAAGGCCGCACAGTACCAGCTGGGCCCAACCCCCCTGGTGCTCC
TATGGAAGGACAACAACGTGACGCGGTATCTCGGGGTGGAGGCACAGCAG
GCTGTAGTTTTGCGGGTGGGAGGCATCCCTGGGGCAATGGCTAAACCATC
TCGTGGAGCAGGAGCAAATATTTCTACAGCGGATCATCCCGCGGGAAACC
GTTTGACTGCTCCAACGGCCCTCGGCGCGTTAGATCGTGGCCCGAGAAAA
TGCCCTCTGCTGACTTGCGACGGTGTATCTCTAGGGGAAGTGGAGTACGA
GGGTAGCTCTGGCATCGCCCCTCAGGCTGTAGTTTTGCGGGTGGGAGGCA
TCCCTGGGGCAATGGCTAAACCATCTCGTGGAGCAGGAGCAAATATTTCT
ACAGCGGATCATCCCGCGGGAAACCGTTTGACTGCTCCAACGGCCCTCGG
CGCGTTAGATCGTGGCCCGAGAAAATGCCCTCTGCTGACTTGCGACGGTG
TATCTCTAGGGGAAGTGGAGTACGAGGGTAGCTCTGGCATCGCCCCTCAG
GCGAAGCCGGGCGAGTTGCTACGCTTTACCCTCTCGGGGGCCGAGGAGGA
GCTTGTCGAGCGCCCGGGAGCAGACCTACTGGGAGGTGCAAGTCTTCAAG
GCACAGTGCATGGACTTCGTTTCGACAAGCGTTGTAGCATGTTTCGGCCG
ATGGCAGACAGTTGGAGCAAGGCGAAGCCGGGCGAGTTGCTACGCTTTAC
CCTCTCGGGGGCCGAGGAGGAGCTTGTCGAGCGCCCGGGAGCAGACCTAC
TGGGAGGTGCAAGTCTTCAAGGCACAGTGCATGGACTTCGTTTCGACAAG
CGTTGTAGCATGTTTCGGCCGATGGCAGACAGTTGGAGCAAGGTGCTGTT
CCAGAGCCGGCTGCGACGGGGCGGCAATCTGAACGTCAACGATATCGACG
CGAGCTGTTTCGCCTCGACCGGTCAAACCGCTATTGGAGCCGACCTTTCC
TTGCGTAAACTCTGCGAAGAACAAGGAGGCATCGAAGATGATGATATGAC
GTTATAGGTGCTGTTCCAGAGCCGGCTGCGACGGGGCGGCAATCTGAACG
TCAACGATATCGACGCGAGCTGTTTCGCCTCGACCGGTCAAACCGCTATT
GGAGCCGACCTTTCCTTGCGTAAACTCTGCGAAGAACAAGGAGGCATCGA
AGATGATGATATGACGTTATAG
back to top