mRNA_H-elongata_contig138550.2692.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138550.2692.1
Unique NamemRNA_H-elongata_contig138550.2692.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138550.2692.1 vs. uniprot
Match: D8LG77_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG77_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 2.310e-98
Identity = 174/218 (79.82%), Postives = 188/218 (86.24%), Query Frame = 1 
Query:    1 CPFHVLHHCRARAKAKKAS---YFTPK----SVGSVSGASGSA---DDEYYSNYNPIRTG-MLMPHGKAIAPQSIKAISPTPSQTKASLLLFTDLTQATPPRDDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARSALETAVVYTEAEEEAEFWQGLQ 621
            C + +L  CR R +AK+AS   +F+ K    + GSVSGASG+    + EYY N+NPIRTG ML PHGKAIAP SIKA+SPTPSQTK + L FT+L +ATPPR DPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEAR ALETAVVYTEAEEEAEFWQGLQ
Sbjct: 1063 CLWAILGFCRQRMRAKEASRKDFFSSKMMGSAAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTEL-FTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQ 1279
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BLAST of mRNA_H-elongata_contig138550.2692.1 vs. uniprot
Match: A0A6H5KYK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 3.040e-98
Identity = 174/218 (79.82%), Postives = 188/218 (86.24%), Query Frame = 1 
Query:    1 CPFHVLHHCRARAKAKKAS---YFTPK----SVGSVSGASGSA---DDEYYSNYNPIRTG-MLMPHGKAIAPQSIKAISPTPSQTKASLLLFTDLTQATPPRDDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARSALETAVVYTEAEEEAEFWQGLQ 621
            C + +L  CR R +AK+AS   +F+ K    + GSVSGASG+    + EYY N+NPIRTG ML PHGKAIAP SIKA+SPTPSQTK + L FT+L +ATPPR DPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEAR ALETAVVYTEAEEEAEFWQGLQ
Sbjct: 1559 CLWAILGFCRQRRRAKEASRQDFFSSKLMGSTAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTEL-FTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQ 1775
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138550.2692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG77_ECTSI2.310e-9879.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KYK9_9PHAE3.040e-9879.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138550contigH-elongata_contig138550:122..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue4.8e-87
Seed eggNOG ortholog2880.D8LG77
EggNOG OGs2D0P0@1,2SEV1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929822.21566-CDS-H-elongata_contig138550:121..5051622929822.21566-CDS-H-elongata_contig138550:121..505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138550 122..505 -
1691679172.4027622-CDS-H-elongata_contig138550:121..5051691679172.4027622-CDS-H-elongata_contig138550:121..505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138550 122..505 -
1622929822.2318099-CDS-H-elongata_contig138550:896..11331622929822.2318099-CDS-H-elongata_contig138550:896..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138550 897..1133 -
1691679172.416442-CDS-H-elongata_contig138550:896..11331691679172.416442-CDS-H-elongata_contig138550:896..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138550 897..1133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138550.2692.1prot_H-elongata_contig138550.2692.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138550 122..1133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138550.2692.1

>prot_H-elongata_contig138550.2692.1 ID=prot_H-elongata_contig138550.2692.1|Name=mRNA_H-elongata_contig138550.2692.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
CPFHVLHHCRARAKAKKASYFTPKSVGSVSGASGSADDEYYSNYNPIRTG
MLMPHGKAIAPQSIKAISPTPSQTKASLLLFTDLTQATPPRDDPIYTEMI
GTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIY
DILRHCEDSHLTADEKSLLATQLAPHWTNSEEARSALETAVVYTEAEEEA
EFWQGLQ
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mRNA from alignment at H-elongata_contig138550:122..1133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138550.2692.1 ID=mRNA_H-elongata_contig138550.2692.1|Name=mRNA_H-elongata_contig138550.2692.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1012bp|location=Sequence derived from alignment at H-elongata_contig138550:122..1133- (Himanthalia elongata Himel1 dioecious)
TGTCCCTTCCACGTTTTGCACCACTGCAGGGCCAGGGCAAAAGCGAAAAA
GGCTTCCTACTTTACCCCGAAGTCCGTGGGATCGGTTTCAGGGGCCTCTG
GGTCTGCGGATGACGAGTACTACAGCAACTACAACCCTATTCGGACGGGC
ATGCTTATGCCTCACGGCAAAGCCATCGCGCCCCAGTCGATCAAAGCCAT
CTCGCCCACCCCGTCTCAGACTAAGGCGAGTTTGCTTGTATTTTACTGTC
CCTTACGAAGAGAAGTAGTGTAGCGAAGAGAGGAGAGGGGGCACGTGCCG
AGTTTAATGGGGGGAAATAGTCCGGTGTTGTTCGCTATTTTGATCTTTTG
TATTGTCTAACTAGTCTCTCGTTGACTCGCGTGTGCGTGTAATCGATAGA
AATGTTGTGTGTGTGTGTTGGTATATTTATTTTCCTGGTGGGTTTTCTAT
GCGAGACCTCGCCTGCTTCTCCATTGACACATATATCACCTGCTCCTTTC
AATAGTTAAGAGACGGGGCAAGGGGCATGTGGGTGTAATAAAATATCGTT
GTTTGGATGATGTCTTACAAATATTAACTCTACGTGTTCCTCCATCTCCA
ACGCCTTCTGGTTCTGCAGCAAAACCAGCTCTTCACGGACCTGACGCAGG
CCACACCCCCGCGCGACGACCCAATATACACGGAGATGATCGGCACCCTT
GGGCTGTTCGGCACCTTCTACATGTCCAAGGAAGATATGGACTTCTGCGC
GATGCGGCTGTATAGCAACTTCAAGCAGGCACAGGAAAACATGGAACGAC
ACGCGATCCTGGACTCGATCGACGTGATGCCCGAGATCTACGACATTCTA
CGACACTGCGAGGACAGCCACCTTACAGCGGATGAAAAATCGCTGCTGGC
CACGCAGCTCGCGCCGCACTGGACCAATAGCGAGGAGGCCAGGAGCGCTC
TTGAGACGGCCGTGGTGTACACGGAGGCGGAGGAGGAGGCAGAGTTCTGG
CAGGGCTTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig138550:122..1133-

>mRNA_H-elongata_contig138550.2692.1 ID=mRNA_H-elongata_contig138550.2692.1|Name=mRNA_H-elongata_contig138550.2692.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig138550:122..1133- (Himanthalia elongata Himel1 dioecious)
TGTCCCTTCCACGTTTTGCACCACTGCAGGGCCAGGGCAAAAGCGAAAAA
GGCTTCCTACTTTACCCCGAAGTCCGTGGGATCGGTTTCAGGGGCCTCTG
GGTCTGCGGATGACGAGTACTACAGCAACTACAACCCTATTCGGACGGGC
ATGCTTATGCCTCACGGCAAAGCCATCGCGCCCCAGTCGATCAAAGCCAT
CTCGCCCACCCCGTCTCAGACTAAGGCGAGTTTGCTTTGTCCCTTCCACG
TTTTGCACCACTGCAGGGCCAGGGCAAAAGCGAAAAAGGCTTCCTACTTT
ACCCCGAAGTCCGTGGGATCGGTTTCAGGGGCCTCTGGGTCTGCGGATGA
CGAGTACTACAGCAACTACAACCCTATTCGGACGGGCATGCTTATGCCTC
ACGGCAAAGCCATCGCGCCCCAGTCGATCAAAGCCATCTCGCCCACCCCG
TCTCAGACTAAGGCGAGTTTGCTTCTCTTCACGGACCTGACGCAGGCCAC
ACCCCCGCGCGACGACCCAATATACACGGAGATGATCGGCACCCTTGGGC
TGTTCGGCACCTTCTACATGTCCAAGGAAGATATGGACTTCTGCGCGATG
CGGCTGTATAGCAACTTCAAGCAGGCACAGGAAAACATGGAACGACACGC
GATCCTGGACTCGATCGACGTGATGCCCGAGATCTACGACATTCTACGAC
ACTGCGAGGACAGCCACCTTACAGCGGATGAAAAATCGCTGCTGGCCACG
CAGCTCGCGCCGCACTGGACCAATAGCGAGGAGGCCAGGAGCGCTCTTGA
GACGGCCGTGGTGTACACGGAGGCGGAGGAGGAGGCAGAGTTCTGGCAGG
GCTTGCAGCTCTTCACGGACCTGACGCAGGCCACACCCCCGCGCGACGAC
CCAATATACACGGAGATGATCGGCACCCTTGGGCTGTTCGGCACCTTCTA
CATGTCCAAGGAAGATATGGACTTCTGCGCGATGCGGCTGTATAGCAACT
TCAAGCAGGCACAGGAAAACATGGAACGACACGCGATCCTGGACTCGATC
GACGTGATGCCCGAGATCTACGACATTCTACGACACTGCGAGGACAGCCA
CCTTACAGCGGATGAAAAATCGCTGCTGGCCACGCAGCTCGCGCCGCACT
GGACCAATAGCGAGGAGGCCAGGAGCGCTCTTGAGACGGCCGTGGTGTAC
ACGGAGGCGGAGGAGGAGGCAGAGTTCTGGCAGGGCTTGCAG
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