mRNA_H-elongata_contig138480.2688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138480.2688.1
Unique NamemRNA_H-elongata_contig138480.2688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138480.2688.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.500e-28
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   85 SALEVIDAVVDRDDDVLLVEDILEGFGEVPVSVDFSAVTDHMFIGFKAGIVRIYPDGGNTTYAATYDSCVDIEDEVRDN 321
            + LEV++ VVDRD DVL+VEDILEGFG VPVSV FS  T HMFIGFKAG VRIYPDGG+T  AA YD CVD+EDEV +N
Sbjct:   36 AGLEVLETVVDRDGDVLVVEDILEGFGRVPVSVAFSPTTTHMFIGFKAGGVRIYPDGGDTLVAAIYDDCVDMEDEVYEN 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138480.2688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE2.500e-2873.42PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138480contigH-elongata_contig138480:825..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size330
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.715529-CDS-H-elongata_contig138480:824..11541622929821.715529-CDS-H-elongata_contig138480:824..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138480 825..1154 +
1691679172.1739652-CDS-H-elongata_contig138480:824..11541691679172.1739652-CDS-H-elongata_contig138480:824..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138480 825..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138480.2688.1prot_H-elongata_contig138480.2688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138480 825..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138480.2688.1

>prot_H-elongata_contig138480.2688.1 ID=prot_H-elongata_contig138480.2688.1|Name=mRNA_H-elongata_contig138480.2688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MVPRSTGAWAGIVLGGLVLVGCICGRMISALEVIDAVVDRDDDVLLVEDI
LEGFGEVPVSVDFSAVTDHMFIGFKAGIVRIYPDGGNTTYAATYDSCVDI
EDEVRDNRG*
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mRNA from alignment at H-elongata_contig138480:825..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138480.2688.1 ID=mRNA_H-elongata_contig138480.2688.1|Name=mRNA_H-elongata_contig138480.2688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig138480:825..1154+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCCGCGATCAACCGGCGCGTGGGCCGGTATTGTGCTCGGTGGCCT
CGTACTGGTGGGGTGCATTTGTGGCCGAATGATCTCAGCGCTCGAGGTGA
TTGATGCAGTGGTCGACCGAGATGACGACGTCCTCCTTGTGGAGGATATT
CTCGAGGGCTTTGGAGAGGTGCCAGTCAGTGTGGACTTCTCGGCAGTTAC
CGACCATATGTTCATCGGCTTCAAAGCTGGCATCGTTCGAATCTATCCGG
ACGGTGGAAACACAACCTACGCGGCGACGTACGACTCGTGCGTCGATATA
GAGGATGAGGTGAGAGACAACAGAGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig138480:825..1154+

>mRNA_H-elongata_contig138480.2688.1 ID=mRNA_H-elongata_contig138480.2688.1|Name=mRNA_H-elongata_contig138480.2688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig138480:825..1154+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCCGCGATCAACCGGCGCGTGGGCCGGTATTGTGCTCGGTGGCCT
CGTACTGGTGGGGTGCATTTGTGGCCGAATGATCTCAGCGCTCGAGGTGA
TTGATGCAGTGGTCGACCGAGATGACGACGTCCTCCTTGTGGAGGATATT
CTCGAGGGCTTTGGAGAGGTGCCAGTCAGTGTGGACTTCTCGGCAGTTAC
CGACCATATGTTCATCGGCTTCAAAGCTGGCATCGTTCGAATCTATCCGG
ACGGTGGAAACACAACCTACGCGGCGACGTACGACTCGTGCGTCGATATA
GAGGATGAGGTGAGAGACAACAGAGGATGAATGGTTCCGCGATCAACCGG
CGCGTGGGCCGGTATTGTGCTCGGTGGCCTCGTACTGGTGGGGTGCATTT
GTGGCCGAATGATCTCAGCGCTCGAGGTGATTGATGCAGTGGTCGACCGA
GATGACGACGTCCTCCTTGTGGAGGATATTCTCGAGGGCTTTGGAGAGGT
GCCAGTCAGTGTGGACTTCTCGGCAGTTACCGACCATATGTTCATCGGCT
TCAAAGCTGGCATCGTTCGAATCTATCCGGACGGTGGAAACACAACCTAC
GCGGCGACGTACGACTCGTGCGTCGATATAGAGGATGAGGTGAGAGACAA
CAGAGGATGA
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