mRNA_H-elongata_contig138440.2686.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138440.2686.1
Unique NamemRNA_H-elongata_contig138440.2686.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138440.2686.1 vs. uniprot
Match: A0A6H5KJQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.020e-8
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 VLTFEPSNPIIMDYQATLAQYINNERELAAENEED 105
            +L FEP N II+DYQATLAQYINNERELA+  EED
Sbjct:   23 ILKFEPRNAIILDYQATLAQYINNERELASVREED 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138440.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJQ9_9PHAE9.020e-877.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138440contigH-elongata_contig138440:171..613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009810.1
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.5563786-CDS-H-elongata_contig138440:170..2431622929821.5563786-CDS-H-elongata_contig138440:170..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138440 171..243 +
1691679172.1014001-CDS-H-elongata_contig138440:170..2431691679172.1014001-CDS-H-elongata_contig138440:170..243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138440 171..243 +
1622929821.5752358-CDS-H-elongata_contig138440:467..6131622929821.5752358-CDS-H-elongata_contig138440:467..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138440 468..613 +
1691679172.1117404-CDS-H-elongata_contig138440:467..6131691679172.1117404-CDS-H-elongata_contig138440:467..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138440 468..613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138440.2686.1prot_H-elongata_contig138440.2686.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138440 171..613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138440.2686.1

>prot_H-elongata_contig138440.2686.1 ID=prot_H-elongata_contig138440.2686.1|Name=mRNA_H-elongata_contig138440.2686.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
VLTFEPSNPIIMDYQATLAQYINNERELAAENEEDDGDERSMGESSSSGT
EEDDSGEDEDIVYTTGISNRRS*
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mRNA from alignment at H-elongata_contig138440:171..613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138440.2686.1 ID=mRNA_H-elongata_contig138440.2686.1|Name=mRNA_H-elongata_contig138440.2686.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=443bp|location=Sequence derived from alignment at H-elongata_contig138440:171..613+ (Himanthalia elongata Himel1 dioecious)
GTCTTAACCTTTGAGCCGAGTAACCCGATCATCATGGACTACCAGGCTAC
TTTGGCGCAGTACATTAATAATGGTGAGAAGCTGCCGCCCCACATTACGA
AGGCAGTTACATCTCGCTTGCGTTGTTTTGGAATCGAAATCCGAGCATGA
GTGTGAGGAAATCTGGCTCTAGATGGAGCTCTCTACTCTAGATAGCTCCT
AGAGCGTACACCACGATGGAGCATGTGAAATGTCCCCATATGTTAACATC
ATAGACCATCCTTCCAACCTTCCATCCCCGCCTCACATGTTGCGGAGAAC
GTGAACTAGCGGCTGAAAACGAGGAGGATGACGGCGATGAGCGCAGCATG
GGCGAAAGCTCGTCTTCAGGTACTGAGGAAGACGATTCAGGTGAAGATGA
AGATATAGTCTATACGACGGGCATATCAAACAGGAGGAGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig138440:171..613+

>mRNA_H-elongata_contig138440.2686.1 ID=mRNA_H-elongata_contig138440.2686.1|Name=mRNA_H-elongata_contig138440.2686.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig138440:171..613+ (Himanthalia elongata Himel1 dioecious)
GTCTTAACCTTTGAGCCGAGTAACCCGATCATCATGGACTACCAGGCTAC
TTTGGCGCAGTACATTAATAATGGTCTTAACCTTTGAGCCGAGTAACCCG
ATCATCATGGACTACCAGGCTACTTTGGCGCAGTACATTAATAATGAACG
TGAACTAGCGGCTGAAAACGAGGAGGATGACGGCGATGAGCGCAGCATGG
GCGAAAGCTCGTCTTCAGGTACTGAGGAAGACGATTCAGGTGAAGATGAA
GATATAGTCTATACGACGGGCATATCAAACAGGAGGAGCTAGAACGTGAA
CTAGCGGCTGAAAACGAGGAGGATGACGGCGATGAGCGCAGCATGGGCGA
AAGCTCGTCTTCAGGTACTGAGGAAGACGATTCAGGTGAAGATGAAGATA
TAGTCTATACGACGGGCATATCAAACAGGAGGAGCTAG
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