mRNA_H-elongata_contig13844.2685.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13844.2685.1
Unique NamemRNA_H-elongata_contig13844.2685.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13844.2685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13844contigH-elongata_contig13844:644..5315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.4809039-CDS-H-elongata_contig13844:644..8021622929821.4809039-CDS-H-elongata_contig13844:644..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13844 645..802 -
1691679172.0791688-CDS-H-elongata_contig13844:644..8021691679172.0791688-CDS-H-elongata_contig13844:644..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13844 645..802 -
1622929821.4946232-CDS-H-elongata_contig13844:5116..53151622929821.4946232-CDS-H-elongata_contig13844:5116..5315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13844 5117..5315 -
1691679172.0882945-CDS-H-elongata_contig13844:5116..53151691679172.0882945-CDS-H-elongata_contig13844:5116..5315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13844 5117..5315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13844.2685.1prot_H-elongata_contig13844.2685.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13844 645..5315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13844.2685.1

>prot_H-elongata_contig13844.2685.1 ID=prot_H-elongata_contig13844.2685.1|Name=mRNA_H-elongata_contig13844.2685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
EVRESSQGSTPHGCTRILEEMARRDRVRKTPGSRPACECGGAKCPCGGFA
DTAACHNSSAFCAGRSAVRPPLPAGVLLAMATAAGKGVCAFAPMTPPETP
AILTRSCPDLLADGGGRRW
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mRNA from alignment at H-elongata_contig13844:644..5315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13844.2685.1 ID=mRNA_H-elongata_contig13844.2685.1|Name=mRNA_H-elongata_contig13844.2685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4672bp|location=Sequence derived from alignment at H-elongata_contig13844:644..5315- (Himanthalia elongata Himel1 dioecious)
GAGGTAAGAGAGTCGTCCCAAGGGTCAACACCACACGGCTGCACGAGGAT
CCTCGAGGAAATGGCGAGGAGGGATCGTGTGAGGAAGACCCCTGGGTCGA
GACCGGCGTGCGAGTGCGGTGGCGCGAAGTGCCCCTGTGGTGGTTTTGCT
GATACAGCTGCTTGCCACAACAGTTCCGCCTTCTGCGCTGGCAGATCAGG
TACAGTGGTCACGTCCAACTCCGCTTCACCTGAACATAAGTAGAAGAAAC
CTCGCGTTCTTCCCCGATATCGTTCCATTGTATTCGCTGTCATCAAAGTA
TTCGAGGTGAAAGGACGCAACCTGGTGAGGCGCATTGCATGTCCTCCTCA
TCGAAAGCTCCGGGATACGGCACAATATCAGGTAGTCTCGTTGCACTCGA
AGATCCGATTTCGAATATTTATTACTGTATAAATATTGAATTAAGTCAGC
ATCGAGCACCTCTATCGCCTCTCTGTAAGGGGGGAGGTCTTCCACAGCTC
ACCCCGCCCAACCTCGTTTAGCTTTTGAACCTTGCATGTTCAATATCCGG
GGCCCGGTGGGAGCATGGACATTCCAGCCAAGCCGGTGCTTGATCGACAA
ACGGAGAGCTTCAACTCCCACCTTCTACATGTCAACAGTTCCTCAGTTTT
ACCAAACCCCTGCTGCTGCTGCTGGGTTTTCTAAAATAAAACATGAACTC
ATTCCAACCCTCCGAACATTCACGCCTTTTTAGCACCATGAGAGGTGCAG
TCCAGGGGGCCATCGTTTGGAGGTATCCAGCGACCAACTTACCTTCCATA
AATAGTCTTGTATTACGAAGTATATTAATAGTAACATTTCGCTTCTATGA
ACAGGATCAGGATTATCATAACCGAAGTCTGCCACATGAGTCTGAATTGT
CTAGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGCATTAATTTAATTGTA
TATAACCGCGCAATCCCGCCCTGTCATGCAATTAATAGCCGTTCTAGGCT
ACTCTCGCATTGATCCTCCCAATGTACAGTATCAATCATATTTGCTTCCC
AAACATCTGATCAGACGTGACAAAGGAGGCATACCCTCTCTTTTCATTTT
CTCACAAATAGCTTCGGTCGACACATATTTGACCAGCGCTCTCTCCTAAA
CTACCAGGTACATTTTTTGCTAATACTCCCCAACTCTCTCCGTTTTCTAC
CTTCTTACGTTTATTCGCCCCTCCCCCCCCCTCTTTCCCCCTCCCCTCTC
CAATAACGCCCCTCGCTTCCCGCCCCTGGGCTTTGCTCTCATCGGTATGA
CGCGATGTTCTCGCTGGGGCGTCCGGTCTTGCGGCGGTGGATGCGGGTTA
CCCGTCGGCGACACCCCCTCTCCCGCGTCTTCATTCCCATCTATACCATC
CCATCTATACCATCACTTGGTAAACAACGGGACTCTCCCTCCCATCTACC
CTCCTCTCCGTTCTCGTCCCTGTTCCTGTCTCCATCCTCGTCCCCTCCCC
ACTCCCCGTACCTATCACCGTACCTATCACCGTCCCCGTTTCCGTTTCCG
TCCCTATACCCATCTCTGTGCATCTCTGTGCTCGTCCTTGTCCTCGTCCC
CATCCCTGTTCCCGTCGCCGTTTCTTCCTTCCAGTCCCTGTGGCCCGGGT
TTTCCTTCGGTATGACATGGTCGGGCAGGCGCTGGGTCTTGCACTTGGAG
CTGCTGGCTACCATTTTGTCGCGAAGATGCCATGTCTTACGAACGAATGT
TTTGGCTGTATGCGAGGGCCATCCGCTCTCTGCTGAGATGATGTCGCGTG
CAGAAAGACAATGCCTGCTGTAAGACGAAAGAAAATCGCCGCCTAAGACG
CGTTATCTCTGTCCCCTCCGCCAGACGCCGTGACTCCTCGGAGTGGAACT
CCGAGCTGTTCTTCACCCGTCTAATGGCTATGAGTAGCACCTTTATGAGG
ACATGCACGTCGGGACCAACCTCACAACACGTCGAGATAGCGAGAGGTTG
AATAACGGGATTTTTTTTTTGTCTGCGCCTCTCGCTTCCCACACCCACTA
ATGGTAGGGTGGACATAAACGATGCAGTACAGACAGTATCGGAGACTCGG
TTTGCTTTTGTAGATGCATCAGCTGGTGAAATAAAACACCTTCCCGAGTC
AACACGAGCCGACGCGGAAGCACCCTGTTAAAAATCGACAGGGGAGAGGT
GCCACTACGGTGCAAGCGTTGCGTTGGGTGTGGAACGCTTCAGTACGTTC
CTTCGTAGGAGCCGTGCCAGGGTGCGCGCGTAGTTTCCAGCGGGGCGGAT
ACTCGATAGTCGAGTCCTCGTGTGGTCTCTTCCCTTCCTGTGGCGCTATA
AGATGACCTCTCTGTGCCATATCACGCCTCATACACAACATACTTATGTA
TTTACCCTATAAGTATGGCTGGATAACGTACGACTCTGTTCTTAGCTTTT
TATGGTGATAGTGATATCGTCTCTTGTAGGCGCAGGATGAGATTGATCGA
ACCCGTCTCGCGAGGCCAAATTCTCAAGCGCGAACGGGTACAAGGAAGAG
GCAGATTGCGCCGGTCGCTGACGTTGGGGAGGAATGGGAGGAGTAGGAGG
AATCGAGGCTCGAGTATTCGCTTCCACAGGGGTGAATATGGCGGCCCCGG
TAACACCTGTCACGATTGTGACCGCCCCGCAAGTGGCACGAATCCGCCAG
ATCAGAAACGGGATGAAAACCTCAACCGAGCTGGGGATTGTTGGGGCTCG
GGCCGCGATGGGGGCGGCGGAAGAGGGATTCGAAGGGAGCTTCGCGCAGG
CAGTAATTGCCGAAAACAAGGGACCGATCGCACCGGCAGCAGCCTTACGA
CCAATGAAAGTGACGATAGGGCATGAAGAGGCTGACGCTGGCGTGGTTGT
GGCGACCACGACGTCGGCGCAGGCGCCGGTGGCCGCGGCCACAATGACGC
GGGATGTAGTAATAGAGAGAGGTTGTGCCGGGGACTGAGGGAAGGGGCGG
GAGAGATCGAGGCTCGAACACCCGCTGCCGCAGTGGCGAATGCGGCGGTG
CTGATAACGGCGGTAGTGATTGTGGCCGTCCCGCAAGTGGCAAGAATCCG
TCAGACGGAAACGAGATGGAGGTCTCAACCGAGCTAGGGATAAGAAGAGG
TGGGGCCATGGTGGTATTTGAAACGTCAACGCCTCGGAGTGTTGCACCCA
GAGGTGGGGCAGGGGGTGCAAGAGAGAGAGTTGCAGCGGTAGTCCTGCGA
AGTTGTGTAGGCAACGCGAAGAGGATAGGCCGATCCAACGTCTTCAGGGA
TAGCTCGCTCCCCATAAGGGGACGGGGGTGTCAACTGGCGTTGCGCCCCC
TCACGTTTCAGACCGGTTTGCTTGGTCTATTGCAAAGCGATGAAAAGGGG
AAAATGATACGTTTTTCTCTTCATCTGACCACGAGCAAGATTTGCAACCA
TACTATACTACTATACTGCTATGTTACAGACACACATACACACACACACA
CACACTATTTCAGACGGCAAGTGATACCTCCTCTATTATATGGAGAGAGG
CTATGTCAACAATCTGCGGCAGAAGTTACGATGGTCGGGTGTAATGTTTT
CACTAATTACGCCGTCTATTTTTTCCCGTCTAAAAATCCTGCGGTATGAA
CTAAATCAAACCCTCCTTCGAACATCCACACTATATCCCATATCATTTAT
TACACAACGAATGGTACAGAGTCAAGGGGACTATGACCAACTATGGTCAT
GTTCGAGTGTGTACGGTACTACTACCATCCACAGGGTTTCGCTGAAATCA
TAAAAAAAAGTACCTAGTTCGCAATAAAGAAAGTGGTTTAAGATTAGGGA
AAGAGGGAAAGCCTATCAGGACGTAAACGGCGCTGGCTAAGCACATATCG
ACTATCGACTATCATAGGTACAACAAGGATTATTAGGGAACATATCTACG
GTGAATTCTTCTAGACTCTATTGTAAAAAGTTACCACAAAAGTGACCACC
ATGTACTGCAGTACTGCAGCAGAAGGTATTTTGAATACGTGCTAACAGTT
GGGTAACGATGATGTTGTAGATCGTATAATTGTAGATCTAGCCTTCACCT
CTATTTGTACGTATTTTCGTACCGATGACGTTGTTTACCACCGAGAGTCC
GCCGGCACTGAGTCAGCAGCCCTCAAGGTAGCTTGAGTAGCGGGTGCAGC
CTATTGAGGTACAGTACAGTACAGTACAGTACAGTAACCCCATGGACCAA
TTACTATTCGCCTATCTTTTCCCAACACCCACTATTAGTACAGTGGACAT
GTGCGATACAGTATACTATATACAATAGACAGTAGAGCAGTCCTTCACTT
TATCAAGTAAACGGTTGAACTTTCCTGACTCTCTCTCTCTCTCTTTTTCT
TATATATTACCATAATCTCCGTTACTGCTGAATTCTACTACATTATACTT
TACTATACTCTAGATATTTTCCCTGCCTACCCCCCCCCTCGGTGTCTTCC
CATCACTCGGTAGCTGTACGCCCGCCACTTCCAGCAGGCGTTCTCTTGGC
AATGGCCACGGCAGCTGGAAAGGGCGTTTGCGCCTTCGCCCCCATGACGC
CCCCCGAGACACCTGCTATCCTCACGAGGTCCTGCCCAGATCTTCTCGCG
GATGGGGGAGGCAGGAGGTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig13844:644..5315-

>mRNA_H-elongata_contig13844.2685.1 ID=mRNA_H-elongata_contig13844.2685.1|Name=mRNA_H-elongata_contig13844.2685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig13844:644..5315- (Himanthalia elongata Himel1 dioecious)
GAGGTAAGAGAGTCGTCCCAAGGGTCAACACCACACGGCTGCACGAGGAT
CCTCGAGGAAATGGCGAGGAGGGATCGTGTGAGGAAGACCCCTGGGTCGA
GACCGGCGTGCGAGTGCGGTGGCGCGAAGTGCCCCTGTGGTGGTTTTGCT
GATACAGCTGCTTGCCACAACAGTTCCGCCTTCTGCGCTGGCAGATCAGG
AGGTAAGAGAGTCGTCCCAAGGGTCAACACCACACGGCTGCACGAGGATC
CTCGAGGAAATGGCGAGGAGGGATCGTGTGAGGAAGACCCCTGGGTCGAG
ACCGGCGTGCGAGTGCGGTGGCGCGAAGTGCCCCTGTGGTGGTTTTGCTG
ATACAGCTGCTTGCCACAACAGTTCCGCCTTCTGCGCTGGCAGATCAGCT
GTACGCCCGCCACTTCCAGCAGGCGTTCTCTTGGCAATGGCCACGGCAGC
TGGAAAGGGCGTTTGCGCCTTCGCCCCCATGACGCCCCCCGAGACACCTG
CTATCCTCACGAGGTCCTGCCCAGATCTTCTCGCGGATGGGGGAGGCAGG
AGGTGGCTGTACGCCCGCCACTTCCAGCAGGCGTTCTCTTGGCAATGGCC
ACGGCAGCTGGAAAGGGCGTTTGCGCCTTCGCCCCCATGACGCCCCCCGA
GACACCTGCTATCCTCACGAGGTCCTGCCCAGATCTTCTCGCGGATGGGG
GAGGCAGGAGGTGG
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