mRNA_H-elongata_contig138433.2684.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138433.2684.1
Unique NamemRNA_H-elongata_contig138433.2684.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138433.2684.1 vs. uniprot
Match: D8LKP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.530e-6
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:  292 SEVRDLIPPLGETARNLRLLFLGVVAALTIAMMLSYPM 405
            SE+RD++PPLGE AR  RL FLGVVAAL  AM+LSYP+
Sbjct:    2 SELRDVLPPLGERARAARLAFLGVVAALAAAMVLSYPL 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138433.2684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKP9_ECTSI2.530e-671.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138433contigH-elongata_contig138433:415..819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTwo pore domain potassium channel domain
Ec32 orthologEc-03_001120.1
Exons1
Model size406
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.4236503-CDS-H-elongata_contig138433:414..8191622929821.4236503-CDS-H-elongata_contig138433:414..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138433 415..819 +
1691679172.0706458-CDS-H-elongata_contig138433:414..8191691679172.0706458-CDS-H-elongata_contig138433:414..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138433 415..819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138433.2684.1prot_H-elongata_contig138433.2684.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138433 415..819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138433.2684.1

>prot_H-elongata_contig138433.2684.1 ID=prot_H-elongata_contig138433.2684.1|Name=mRNA_H-elongata_contig138433.2684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
TSSTSGGPSKTRGTREIMSASLSRHSLPTSRHGSSRHGSSWHGSSWHGSS
RHGSSSSTHGSSYHGSSRHGEITPPVVKSHPPRVHAASLLGLQVWAFSEV
RDLIPPLGETARNLRLLFLGVVAALTIAMMLSYPM
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mRNA from alignment at H-elongata_contig138433:415..819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138433.2684.1 ID=mRNA_H-elongata_contig138433.2684.1|Name=mRNA_H-elongata_contig138433.2684.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig138433:415..819+ (Himanthalia elongata Himel1 dioecious)
ACCTCTTCGACCTCGGGCGGTCCTTCAAAGACGAGGGGGACGAGGGAAAT
TATGTCCGCGTCTTTGTCAAGACATTCCTTACCCACGTCTCGACACGGAT
CGTCCAGGCATGGTTCGTCATGGCATGGTTCTTCCTGGCACGGGTCGTCC
CGGCATGGGTCGTCTAGCTCTACCCACGGTTCGTCCTATCATGGGTCGTC
TAGACACGGAGAAATAACCCCCCCTGTTGTAAAGAGTCATCCACCCAGGG
TACATGCGGCGTCGTTGCTCGGTCTTCAAGTCTGGGCTTTCAGCGAAGTG
AGGGACCTTATTCCGCCACTCGGGGAGACAGCGCGGAATTTGAGACTTCT
TTTCCTGGGAGTGGTTGCGGCGCTTACCATCGCGATGATGCTGTCGTACC
CTATG
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Coding sequence (CDS) from alignment at H-elongata_contig138433:415..819+

>mRNA_H-elongata_contig138433.2684.1 ID=mRNA_H-elongata_contig138433.2684.1|Name=mRNA_H-elongata_contig138433.2684.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig138433:415..819+ (Himanthalia elongata Himel1 dioecious)
ACCTCTTCGACCTCGGGCGGTCCTTCAAAGACGAGGGGGACGAGGGAAAT
TATGTCCGCGTCTTTGTCAAGACATTCCTTACCCACGTCTCGACACGGAT
CGTCCAGGCATGGTTCGTCATGGCATGGTTCTTCCTGGCACGGGTCGTCC
CGGCATGGGTCGTCTAGCTCTACCCACGGTTCGTCCTATCATGGGTCGTC
TAGACACGGAGAAATAACCCCCCCTGTTGTAAAGAGTCATCCACCCAGGG
TACATGCGGCGTCGTTGCTCGGTCTTCAAGTCTGGGCTTTCAGCGAAGTG
AGGGACCTTATTCCGCCACTCGGGGAGACAGCGCGGAATTTGAGACTTCT
TTTCCTGGGAGTGGTTGCGGCGCTTACCATCGCGATGATGCTGTCGTACC
CTATGACCTCTTCGACCTCGGGCGGTCCTTCAAAGACGAGGGGGACGAGG
GAAATTATGTCCGCGTCTTTGTCAAGACATTCCTTACCCACGTCTCGACA
CGGATCGTCCAGGCATGGTTCGTCATGGCATGGTTCTTCCTGGCACGGGT
CGTCCCGGCATGGGTCGTCTAGCTCTACCCACGGTTCGTCCTATCATGGG
TCGTCTAGACACGGAGAAATAACCCCCCCTGTTGTAAAGAGTCATCCACC
CAGGGTACATGCGGCGTCGTTGCTCGGTCTTCAAGTCTGGGCTTTCAGCG
AAGTGAGGGACCTTATTCCGCCACTCGGGGAGACAGCGCGGAATTTGAGA
CTTCTTTTCCTGGGAGTGGTTGCGGCGCTTACCATCGCGATGATGCTGTC
GTACCCTATG
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