mRNA_H-elongata_contig138291.2679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138291.2679.1
Unique NamemRNA_H-elongata_contig138291.2679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138291.2679.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.150e-23
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:    5 VKYAQPSNPLDKNLGGGRMCGKSLEQTYAVGRGFVGSVHLEAMVRVLGHADLPPLVETLIEQMRQ 199
             KY QP + LDKNLGGGR+CGK+ EQ ++VGRGFVG  HL AMVR+LGH DLP +VET+IE MRQ
Sbjct:  664 TKYPQPPSTLDKNLGGGRLCGKAFEQIFSVGRGFVGGTHLSAMVRLLGHTDLPLVVETIIEHMRQ 728
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BLAST of mRNA_H-elongata_contig138291.2679.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.510e-21
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:    5 VKYAQPSNPLDKNLGGGRMCGKSLEQTYAVGRGFVGSVHLEAMVRVLGHADLPPLVETLIEQMRQ 199
             KY QP + LDKNLGGGR+CGK+ EQ ++VGRGFVG  HL AMVR+LG+ DLP +VET+IE MRQ
Sbjct:  958 TKYPQPPSTLDKNLGGGRLCGKAFEQMFSVGRGFVGGTHLVAMVRLLGNTDLPLVVETIIEHMRQ 1022
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138291.2679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQX8_9PHAE9.150e-2369.23UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6Y8_ECTSI1.510e-2167.69UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138291contigH-elongata_contig138291:676..1455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.8185015-CDS-H-elongata_contig138291:676..7951622929820.8185015-CDS-H-elongata_contig138291:676..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138291 677..795 -
1691679170.5967834-CDS-H-elongata_contig138291:676..7951691679170.5967834-CDS-H-elongata_contig138291:676..795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138291 677..795 -
1622929820.836191-CDS-H-elongata_contig138291:1373..14551622929820.836191-CDS-H-elongata_contig138291:1373..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138291 1374..1455 -
1691679170.609805-CDS-H-elongata_contig138291:1373..14551691679170.609805-CDS-H-elongata_contig138291:1373..1455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138291 1374..1455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138291.2679.1prot_H-elongata_contig138291.2679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138291 677..1455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138291.2679.1

>prot_H-elongata_contig138291.2679.1 ID=prot_H-elongata_contig138291.2679.1|Name=mRNA_H-elongata_contig138291.2679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
GGQVRPAIQPVRQKPGRWSNVRKVFGADICGRTRVRGQRAPRGDGACAGP
CRSTSPGGDTNRADASK
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mRNA from alignment at H-elongata_contig138291:676..1455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138291.2679.1 ID=mRNA_H-elongata_contig138291.2679.1|Name=mRNA_H-elongata_contig138291.2679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig138291:676..1455- (Himanthalia elongata Himel1 dioecious)
GGTGGTCAAGTACGCCCAGCCATCCAACCCGTTAGACAAAAACCTGGGAG
GTGGTCGAATGTGCGGAAAGTCTTTGGAGCAGGTAATAAAAGCCGAGCGA
CAAGCTCAAGAAAAACAATAACACTCTTTCACTCTTTCCAGTCTTGGTTA
ATTCTTCTAATGCCTAATGCCTAATGTCTAATGTAGTATTGTTACTAATA
TTAGTATATGATGATGATGATAATGATGATGATGATGGTACTGTTACTTA
TAATGGTGCTAGTGCTAGTGCTGCCCAAGACTTTTCTTTTTCTTTTTTTG
GCCCTCGAAATATTTCTTTTTTTCTGCAGTATAAACTACAGTATAAACTG
TGAGGGGGGAACGATGGGACGGCGTGTCCCGACGACTCATGGTCTGATCA
CATCAAGTTAATGTCATGTAAAGTAAAGATTCAATTTTGGGGTACGATTT
ACATGTAAAGTAAGTATTGATACACTTTTCAGCTCAAGCTCGCCCCAGTT
CAATCGGATCGGATCGGATATCTTCGCCGCCTAGCGCAGAGAACAAAAAT
ATCTCCCCCCATTTCATGTTTTGGGGTACACTATTGTAGTATTGTAGTGT
TAACAGTATTCATTAGTAGTATTAGTATTCTAGTCTAACCTCGATTTCTG
GCCCCTTCAGACATATGCGGTCGGACGAGGGTTCGTGGGCAGCGTGCACC
TAGAGGCGATGGTGCGTGTGCTGGGCCATGCCGATCTACCTCCCCTGGTG
GAGACACTAATCGAGCAGATGCGTCAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig138291:676..1455-

>mRNA_H-elongata_contig138291.2679.1 ID=mRNA_H-elongata_contig138291.2679.1|Name=mRNA_H-elongata_contig138291.2679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig138291:676..1455- (Himanthalia elongata Himel1 dioecious)
GGTGGTCAAGTACGCCCAGCCATCCAACCCGTTAGACAAAAACCTGGGAG
GTGGTCGAATGTGCGGAAAGTCTTTGGAGCAGGGTGGTCAAGTACGCCCA
GCCATCCAACCCGTTAGACAAAAACCTGGGAGGTGGTCGAATGTGCGGAA
AGTCTTTGGAGCAGACATATGCGGTCGGACGAGGGTTCGTGGGCAGCGTG
CACCTAGAGGCGATGGTGCGTGTGCTGGGCCATGCCGATCTACCTCCCCT
GGTGGAGACACTAATCGAGCAGATGCGTCAAAAACATATGCGGTCGGACG
AGGGTTCGTGGGCAGCGTGCACCTAGAGGCGATGGTGCGTGTGCTGGGCC
ATGCCGATCTACCTCCCCTGGTGGAGACACTAATCGAGCAGATGCGTCAA
AA
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