mRNA_H-elongata_contig13827.2677.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13827.2677.1
Unique NamemRNA_H-elongata_contig13827.2677.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13827.2677.1 vs. uniprot
Match: A0A6H5L354_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L354_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.780e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 ALRLVLPDTSNVSDEDLGLLFMKIDVNSSGGVAWDDFTDFLLQ 129
            ALR VLPD  +++DEDLGLLFMKID N SG V WD+FT FLLQ
Sbjct:   26 ALRSVLPDIEDLTDEDLGLLFMKIDANGSGDVDWDEFTGFLLQ 68
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BLAST of mRNA_H-elongata_contig13827.2677.1 vs. uniprot
Match: D7FNP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP2_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.090e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 ALRLVLPDTSNVSDEDLGLLFMKIDVNSSGGVAWDDFTDFLLQ 129
            ALR VLPD  +++DEDLGLLFMKID N SG V WD+FT FLLQ
Sbjct:  106 ALRSVLPDIEDLTDEDLGLLFMKIDANGSGDVDWDEFTGFLLQ 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13827.2677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L354_9PHAE2.780e-1172.09EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FNP2_ECTSI5.090e-1172.09EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13827contigH-elongata_contig13827:1562..1701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size140
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.4941611-CDS-H-elongata_contig13827:1561..16991622929820.4941611-CDS-H-elongata_contig13827:1561..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13827 1562..1699 +
1691679170.4692006-CDS-H-elongata_contig13827:1561..16991691679170.4692006-CDS-H-elongata_contig13827:1561..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13827 1562..1699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13827.2677.1prot_H-elongata_contig13827.2677.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13827 1562..1699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13827.2677.1

>prot_H-elongata_contig13827.2677.1 ID=prot_H-elongata_contig13827.2677.1|Name=mRNA_H-elongata_contig13827.2677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
ALRLVLPDTSNVSDEDLGLLFMKIDVNSSGGVAWDDFTDFLLQASS
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mRNA from alignment at H-elongata_contig13827:1562..1701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13827.2677.1 ID=mRNA_H-elongata_contig13827.2677.1|Name=mRNA_H-elongata_contig13827.2677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=140bp|location=Sequence derived from alignment at H-elongata_contig13827:1562..1701+ (Himanthalia elongata Himel1 dioecious)
GCCCTTCGCCTTGTTCTACCTGATACAAGCAATGTCTCCGACGAGGATCT
CGGACTGCTCTTCATGAAGATAGACGTCAACAGCAGCGGCGGGGTCGCCT
GGGACGACTTCACCGACTTCCTTCTACAGGCAAGCTCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig13827:1562..1701+

>mRNA_H-elongata_contig13827.2677.1 ID=mRNA_H-elongata_contig13827.2677.1|Name=mRNA_H-elongata_contig13827.2677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig13827:1562..1701+ (Himanthalia elongata Himel1 dioecious)
GCCCTTCGCCTTGTTCTACCTGATACAAGCAATGTCTCCGACGAGGATCT
CGGACTGCTCTTCATGAAGATAGACGTCAACAGCAGCGGCGGGGTCGCCT
GGGACGACTTCACCGACTTCCTTCTACAGGCAAGCTCAGCCCTTCGCCTT
GTTCTACCTGATACAAGCAATGTCTCCGACGAGGATCTCGGACTGCTCTT
CATGAAGATAGACGTCAACAGCAGCGGCGGGGTCGCCTGGGACGACTTCA
CCGACTTCCTTCTACAGGCAAGCTCA
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