mRNA_H-elongata_contig13821.2673.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13821.2673.1
Unique NamemRNA_H-elongata_contig13821.2673.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13821.2673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13821contigH-elongata_contig13821:387..973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13821.2673.1prot_H-elongata_contig13821.2673.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13821 485..802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.229104-UTR-H-elongata_contig13821:386..4841622929820.229104-UTR-H-elongata_contig13821:386..484Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13821 387..484 +
1691679170.3897867-UTR-H-elongata_contig13821:386..4841691679170.3897867-UTR-H-elongata_contig13821:386..484Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13821 387..484 +
1622929820.2596157-UTR-H-elongata_contig13821:802..9731622929820.2596157-UTR-H-elongata_contig13821:802..973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13821 803..973 +
1691679170.4147584-UTR-H-elongata_contig13821:802..9731691679170.4147584-UTR-H-elongata_contig13821:802..973Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13821 803..973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.2431226-CDS-H-elongata_contig13821:484..8021622929820.2431226-CDS-H-elongata_contig13821:484..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13821 485..802 +
1691679170.400042-CDS-H-elongata_contig13821:484..8021691679170.400042-CDS-H-elongata_contig13821:484..802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13821 485..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13821.2673.1

>prot_H-elongata_contig13821.2673.1 ID=prot_H-elongata_contig13821.2673.1|Name=mRNA_H-elongata_contig13821.2673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MKRNNFLQLRRTKCFQWGTKKRRLGDKAGSSVTRGAVSLVEFRPTTKALS
PLQEELIRTGEVRILRVVTKDQHAYLSTKALWRKTFLVHRAGVDESFLLP
FSKRP*
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mRNA from alignment at H-elongata_contig13821:387..973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13821.2673.1 ID=mRNA_H-elongata_contig13821.2673.1|Name=mRNA_H-elongata_contig13821.2673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=587bp|location=Sequence derived from alignment at H-elongata_contig13821:387..973+ (Himanthalia elongata Himel1 dioecious)
ATTCCAGTGCACCACATCGCATCTGCATCCATCCGCTGCTCGTCGCCCAA
GCGTTGTTCGCGAGCTGTTTCTACGTTCGTCCGTAAAATCAAGCGGGCAT
GAAGCGTAATAATTTTTTGCAGTTGCGGCGGACGAAATGCTTCCAGTGGG
GGACGAAAAAGCGTCGACTCGGAGACAAGGCAGGGTCTTCTGTAACCCGT
GGGGCGGTGAGCTTGGTGGAGTTCCGCCCAACGACGAAGGCCTTGTCTCC
TTTACAAGAAGAGTTGATCCGCACGGGGGAAGTAAGGATTTTGCGCGTAG
TAACGAAAGACCAACATGCATATCTCTCGACAAAGGCTCTGTGGAGAAAA
ACGTTTCTGGTACATCGCGCGGGCGTTGATGAATCTTTCTTATTGCCGTT
TTCTAAACGCCCTTGATATTTTTCGTTCAGGGTGACGTTTTTTGGAGGAA
CATTTACCTTGCTTCAGAGGTGTAAATCTTAAATATTCAATCACTTCTAT
ATCAAGTACAAGGTCATAGTCTAGGTGAAGATAATTGCCTTATTATTCCG
CTAGAGGGTTAGCCTATGACAATTTATGTTACTTATT
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Coding sequence (CDS) from alignment at H-elongata_contig13821:387..973+

>mRNA_H-elongata_contig13821.2673.1 ID=mRNA_H-elongata_contig13821.2673.1|Name=mRNA_H-elongata_contig13821.2673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig13821:387..973+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCGTAATAATTTTTTGCAGTTGCGGCGGACGAAATGCTTCCAGTG
GGGGACGAAAAAGCGTCGACTCGGAGACAAGGCAGGGTCTTCTGTAACCC
GTGGGGCGGTGAGCTTGGTGGAGTTCCGCCCAACGACGAAGGCCTTGTCT
CCTTTACAAGAAGAGTTGATCCGCACGGGGGAAGTAAGGATTTTGCGCGT
AGTAACGAAAGACCAACATGCATATCTCTCGACAAAGGCTCTGTGGAGAA
AAACGTTTCTGGTACATCGCGCGGGCGTTGATGAATCTTTCTTATTGCCG
TTTTCTAAACGCCCTTGAATGAAGCGTAATAATTTTTTGCAGTTGCGGCG
GACGAAATGCTTCCAGTGGGGGACGAAAAAGCGTCGACTCGGAGACAAGG
CAGGGTCTTCTGTAACCCGTGGGGCGGTGAGCTTGGTGGAGTTCCGCCCA
ACGACGAAGGCCTTGTCTCCTTTACAAGAAGAGTTGATCCGCACGGGGGA
AGTAAGGATTTTGCGCGTAGTAACGAAAGACCAACATGCATATCTCTCGA
CAAAGGCTCTGTGGAGAAAAACGTTTCTGGTACATCGCGCGGGCGTTGAT
GAATCTTTCTTATTGCCGTTTTCTAAACGCCCTTGA
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