mRNA_H-elongata_contig13809.2668.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13809.2668.1
Unique NamemRNA_H-elongata_contig13809.2668.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: D8LC95_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC95_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 4.380e-133
Identity = 201/233 (86.27%), Postives = 219/233 (93.99%), Query Frame = 1
Query:    1 LAMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHYAKK 699
            LA LHT+AH TAVL+LGAGAVSFTHIVK+AEPVFTAGFSA LLGQTF  PVY SL+PIIAGVSLAS+KELSFSWVAFGNAMGSNTASALRGI+GKKQMGKPVGENM+PANLYAVLTVLA CFL+PV+LLVEG+K KPAWDAAIAAGAT+K L++T+L SGL YYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIV+ACI FRTPMTPL+IAGS+IA+ GTLLYSLVKAHY KK
Sbjct:  175 LAALHTVAHVTAVLSLGAGAVSFTHIVKAAEPVFTAGFSAALLGQTFAAPVYLSLLPIIAGVSLASLKELSFSWVAFGNAMGSNTASALRGILGKKQMGKPVGENMSPANLYAVLTVLAFCFLSPVALLVEGRKAKPAWDAAIAAGATAKGLSSTILLSGLFYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVAACIAFRTPMTPLSIAGSTIAVAGTLLYSLVKAHYEKK 407          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A7R9YBK2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBK2_9STRA)

HSP 1 Score: 296 bits (758), Expect = 1.020e-96
Identity = 155/233 (66.52%), Postives = 186/233 (79.83%), Query Frame = 1
Query:    1 LAMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHYAKK 699
            LA LHT AH TAVL+LGAGAVSFTHIVK+AEP F+A F+A+L+GQ F  PVY +LIP+IAGV++AS+KEL+FSWV+FGNAMGSNT SALRGI  KK MG P GENM  ANLYAVLT   +  LTP++L++EG K   AW AA+AA  + + L    L SGL YY YNEVAFLAL  V+P+THAVGNTIKRVV+I+++ IVF T MTP AIAGSS+AILGTL+Y+L K +Y KK
Sbjct:  151 LASLHTGAHLTAVLSLGAGAVSFTHIVKAAEPAFSALFAAVLMGQVFAAPVYLTLIPVIAGVAVASMKELAFSWVSFGNAMGSNTFSALRGIYAKKNMGNPQGENMNSANLYAVLTCFGIALLTPIALILEGGKMGAAWTAAVAAYGSQQLLLWHALLSGLYYYSYNEVAFLALSQVHPITHAVGNTIKRVVVIIASVIVFGTTMTPTAIAGSSVAILGTLMYALAKNYYQKK 383          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A6U4KWF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KWF3_9STRA)

HSP 1 Score: 287 bits (734), Expect = 5.900e-93
Identity = 149/233 (63.95%), Postives = 181/233 (77.68%), Query Frame = 1
Query:    1 LAMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHYAKK 699
            LA +HT AHATAVL+LGAGAVSFTHIVK+AEP F+A F+A+ LGQ F  PVY +L+P+I GV++AS+KELSFSW++FGNAMGSNT SALRGI  KK MG PVGENM  ANLYAVLT + +  L P++LL EG K+  +W A +AA      L   +L SGL YYLYNEVAFLAL  VNPVTHAVGNTIKRVV+I+++ +VF T MTP A+AGS++AI GTL Y+L K  +  K
Sbjct:  158 LASMHTAAHATAVLSLGAGAVSFTHIVKAAEPAFSALFAALFLGQVFAAPVYAALVPVIGGVAVASMKELSFSWMSFGNAMGSNTFSALRGIFAKKNMGNPVGENMNAANLYAVLTCMGIGLLFPIALLTEGSKWAASWAAGVAAYGGKALLAKHMLFSGLFYYLYNEVAFLALSKVNPVTHAVGNTIKRVVVILASVVVFGTQMTPTAVAGSTVAIAGTLGYALAKNAFPNK 390          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A7S2SP14_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP14_9STRA)

HSP 1 Score: 268 bits (685), Expect = 9.480e-86
Identity = 143/230 (62.17%), Postives = 175/230 (76.09%), Query Frame = 1
Query:    4 AMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQM-GKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHY 690
            A+ H   H  AVL+LGAGAVSFTHIVK++EPV +AG +AI L Q  PLPVY SL+PII GV+LAS+ ELSF+W+AFG AM SN ASA R I+ K  + GKP+GEN+TP NLYAVLT+L+   L P++L  E    +  W+AA+A+G T K L  T+  SG+LYYLYNEVAFLALDSV PVTHAVGNTIKRVVII+++ +VF T +TPL  AGS IAI GTL+YSL K  +
Sbjct:  150 ALCHLGTHVGAVLSLGAGAVSFTHIVKASEPVVSAGLTAIFLKQIMPLPVYLSLVPIIGGVALASVTELSFTWLAFGAAMMSNVASASRAILSKTVLSGKPMGENLTPQNLYAVLTILSFFMLLPMALAFEAGSIQSVWNAAVASGLTPKYLAQTIAASGILYYLYNEVAFLALDSVAPVTHAVGNTIKRVVIILASIVVFNTQLTPLGAAGSGIAIAGTLMYSLAKNKF 379          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A836CHH7_9STRA (Plastidic triose-phosphate/phosphate translocator n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH7_9STRA)

HSP 1 Score: 267 bits (683), Expect = 2.340e-85
Identity = 136/229 (59.39%), Postives = 175/229 (76.42%), Query Frame = 1
Query:   13 HTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHYAKK 699
            H I+H +AV+ LGAG+VSFTHIVK+AEP FTA FSAI L Q FP+PVY SL+P++AGV+LAS+KEL+FSW A   AMGSN A++ R I+ K+ MG+P G NM  ANLY VLT+LA   L PV+ ++EG KF   WDAA+  G +  ++T   L SGL +YLYNEVAFLALD+V+PV HAVGNT+KRV II S  I+F   +TPL + GSS+AI+G L++SLVK +Y++K
Sbjct:  157 HAISHLSAVIGLGAGSVSFTHIVKAAEPFFTALFSAIFLKQYFPVPVYLSLVPVVAGVALASLKELNFSWTALCGAMGSNVAASSRAILAKRSMGRPKGTNMGAANLYGVLTILATAMLVPVAGVLEGPKFSAKWDAALLKGYSQDAITKHALLSGLYFYLYNEVAFLALDAVHPVVHAVGNTLKRVFIIASGVILFGNKITPLGMVGSSLAIVGVLIFSLVKEYYSRK 385          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A8J6C741_DIALT (TPT domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C741_DIALT)

HSP 1 Score: 265 bits (678), Expect = 8.000e-85
Identity = 140/229 (61.14%), Postives = 171/229 (74.67%), Query Frame = 1
Query:    1 LAMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAH 687
            +A++H I H   V++LGAGAVSFTHIVK+AEP F+   SAI     FP+PVY +L+P++ GV +AS+ ELSFSWVAF NAMGSNTA +LR I  KK M KP GENM  ANLY VLT+++   L P +L++EG K K  W AAIAAG T+  L  T L SGL YYLYNEVAFL LD+V+P+THAVGNTIKRVVII+++ +VF T MTPL   GSS+AI G LLYSL K +
Sbjct:  140 IALMHGIGHLCTVISLGAGAVSFTHIVKAAEPFFSTVMSAIFTKSYFPVPVYLALLPVVGGVGIASLTELSFSWVAFLNAMGSNTAFSLRAIFSKKAMEKPQGENMGAANLYGVLTIMSFLMLLPFALVLEGAKLKGGWAAAIAAGHTANYLLKTSLVSGLFYYLYNEVAFLCLDNVHPITHAVGNTIKRVVIILASVVVFGTKMTPLNQIGSSLAIFGVLLYSLAKQY 368          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A7S1XYR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYR7_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.460e-83
Identity = 135/230 (58.70%), Postives = 176/230 (76.52%), Query Frame = 1
Query:    1 LAMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHY 690
            +A  HT  H   V++L AG+VSFTHIVK+AEP F+   SA+ L   F LPVY +LIPI+ GV++AS+KELSF+WV+F NAM SNTA ++R I  KKQM  P+GENM+  NLYAVLT+++   L P++ ++EG+K  PAWD+A++AG  S  LT  +L SGL YYLYNEVAFLAL++V+P+THAVGNTIKRVVIIV++ I F+T M+  +I GSSIAI G LLYSL K ++
Sbjct:  144 IATCHTTGHLCTVISLSAGSVSFTHIVKAAEPFFSTVMSAVFLKSFFKLPVYLTLIPIVVGVAMASLKELSFTWVSFLNAMASNTAFSMRAIFSKKQMNAPMGENMSAPNLYAVLTIMSFLGLAPLAGVIEGRKIGPAWDSALSAGLESSELTKKILMSGLSYYLYNEVAFLALNAVHPITHAVGNTIKRVVIIVASVIFFKTKMSMQSIIGSSIAIFGVLLYSLAKQYF 373          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A835ZDI5_9STRA (Triose-phosphate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI5_9STRA)

HSP 1 Score: 261 bits (666), Expect = 4.740e-83
Identity = 132/233 (56.65%), Postives = 173/233 (74.25%), Query Frame = 1
Query:    1 LAMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHYAKK 699
            LA LHT +H +AV+ LGAGAV F H+VK+ EP+FTA  SA+LL +  PLPVY SL+P++ GV+LAS+KELSFSWVAF  AMGSN A+A RG++ KKQMG+    NM P NLY V+T++A   L P +L+VEG + K  W AA AAG TS+++   ++ SGL +YLYNEVAF  L+S++  THAVGNT+KRVV++  + +VF   +TPL   GS++AI G L+YSL K HYAKK
Sbjct:   89 LAALHTTSHISAVIGLGAGAVGFVHVVKALEPLFTAALSALLLQKFMPLPVYASLLPVVGGVALASMKELSFSWVAFAGAMGSNVAAATRGVLAKKQMGQVQAPNMDPGNLYGVMTLIAAAILFPAALVVEGPRIKAVWAAAQAAGHTSRAIWRGMILSGLYFYLYNEVAFYCLNSIDATTHAVGNTVKRVVLLGVSVLVFGHQLTPLGATGSAVAIGGVLVYSLTKNHYAKK 321          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A4D9DFS8_9STRA (TPT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DFS8_9STRA)

HSP 1 Score: 259 bits (661), Expect = 8.270e-82
Identity = 137/232 (59.05%), Postives = 175/232 (75.43%), Query Frame = 1
Query:    4 AMLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPVGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHYAKK 699
            A +H +AH TAV++LGAGAVSFTHI+K+AEP FT+ FSA+ L Q F   VY SLIP++ GV++AS+ E  FSW+AF +AM +NTASA RGI  KK M +P G+NM PANLYAVLT+LA   + PV+ LVEG K KPAW+AA+A   + + L   +++SGL +YLYNEVAFLALDSV+PVTHAVGNTIKRVVII ++ +VF+ P+T     GS++AI G LLYSL      K+
Sbjct:  174 AAMHAMAHITAVISLGAGAVSFTHIIKAAEPAFTSLFSALFLKQYFSPVVYASLIPVMGGVAIASLTERKFSWLAFNSAMLANTASAGRGIFAKKTMKEPQGQNMDPANLYAVLTILATLIMAPVAFLVEGSKLKPAWEAALAV-TSQRQLINYIVSSGLYFYLYNEVAFLALDSVHPVTHAVGNTIKRVVIIGASILVFKNPITLQGYIGSAVAIAGVLLYSLAVERTKKR 404          
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Match: A0A0G4G2H6_VITBC (TPT domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G2H6_VITBC)

HSP 1 Score: 258 bits (658), Expect = 3.810e-81
Identity = 138/230 (60.00%), Postives = 168/230 (73.04%), Query Frame = 1
Query:    7 MLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVYGSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKP--VGENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSLTTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFRTPMTPLAIAGSSIAILGTLLYSLVKAHY 690
            + HT  H  AV+ALGAGAVSF HIVK+AEPVFTAG SA +LGQ      Y +LIP++AGV LAS KELSF+W +FG AM SN +S+LRGI GKK M  P  VGEN+T AN Y++LT+++   L P+S   E K   P W AA+A G T  +L   V+ SG+ YYLYNEVAFLAL  VNPVTHAVGNT+KRVVII+++ +VFR P+TPL   GS +AILGTLLYSL K  +
Sbjct:  192 LFHTGTHVGAVVALGAGAVSFAHIVKAAEPVFTAGLSAAVLGQYLSPITYSALIPVVAGVGLASAKELSFTWTSFGFAMLSNISSSLRGIFGKKTMSDPKAVGENLTAANQYSLLTIISCIALLPLSAFFEYKTLVPNWQAAVANGVTDLALAKLVVLSGIFYYLYNEVAFLALSRVNPVTHAVGNTMKRVVIILASIVVFRNPITPLGAIGSGVAILGTLLYSLAKQKF 421          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13809.2668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC95_ECTSI4.380e-13386.27TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9YBK2_9STRA1.020e-9666.52Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4KWF3_9STRA5.900e-9363.95Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SP14_9STRA9.480e-8662.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CHH7_9STRA2.340e-8559.39Plastidic triose-phosphate/phosphate translocator ... [more]
A0A8J6C741_DIALT8.000e-8561.14TPT domain-containing protein n=2 Tax=Diacronema l... [more]
A0A7S1XYR7_9STRA1.460e-8358.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835ZDI5_9STRA4.740e-8356.65Triose-phosphate transporter family-domain-contain... [more]
A0A4D9DFS8_9STRA8.270e-8259.05TPT domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A0G4G2H6_VITBC3.810e-8160.00TPT domain-containing protein n=1 Tax=Vitrella bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13809contigH-elongata_contig13809:1379..2380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.3
Seed ortholog evalue8.3e-104
Seed eggNOG ortholog2880.D8LC95
Preferred nameSLC35E3
KEGG koko:K06643,ko:K15283,ko:K15285
KEGG TC2.A.7.9
KEGG Pathwayko01522,ko01524,ko04068,ko04110,ko04115,ko04120,ko04144,ko04151,ko04218,ko04919,ko05165,ko05169,ko05200,ko05202,ko05203,ko05205,ko05206,ko05214,ko05215,ko05218,ko05219,ko05220,map01522,map01524,map04068,map04110,map04115,map04120,map04144,map04151,map04218,map04919,map05165,map05169,map05200,map05202,map05203,map05205,map05206,map05214,map05215,map05218,map05219,map05220
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
EC2.3.2.27
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04121,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-14_005600.1
Exons2
Model size702
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13809.2668.1prot_H-elongata_contig13809.2668.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13809 1385..2380 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.6206915-UTR-H-elongata_contig13809:1378..13841622929819.6206915-UTR-H-elongata_contig13809:1378..1384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13809 1379..1384 +
1691679170.1318781-UTR-H-elongata_contig13809:1378..13841691679170.1318781-UTR-H-elongata_contig13809:1378..1384Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13809 1379..1384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.634754-CDS-H-elongata_contig13809:1384..19211622929819.634754-CDS-H-elongata_contig13809:1384..1921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13809 1385..1921 +
1691679170.1462688-CDS-H-elongata_contig13809:1384..19211691679170.1462688-CDS-H-elongata_contig13809:1384..1921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13809 1385..1921 +
1622929819.650022-CDS-H-elongata_contig13809:2221..23801622929819.650022-CDS-H-elongata_contig13809:2221..2380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13809 2222..2380 +
1691679170.1552804-CDS-H-elongata_contig13809:2221..23801691679170.1552804-CDS-H-elongata_contig13809:2221..2380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13809 2222..2380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13809.2668.1

>prot_H-elongata_contig13809.2668.1 ID=prot_H-elongata_contig13809.2668.1|Name=mRNA_H-elongata_contig13809.2668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
MLHTIAHATAVLALGAGAVSFTHIVKSAEPVFTAGFSAILLGQTFPLPVY
GSLIPIIAGVSLASIKELSFSWVAFGNAMGSNTASALRGIVGKKQMGKPV
GENMTPANLYAVLTVLALCFLTPVSLLVEGKKFKPAWDAAIAAGATSKSL
TTTVLTSGLLYYLYNEVAFLALDSVNPVTHAVGNTIKRVVIIVSACIVFR
TPMTPLAIAGSSIAILGTLLYSLVKAHYAKK*
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mRNA from alignment at H-elongata_contig13809:1379..2380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13809.2668.1 ID=mRNA_H-elongata_contig13809.2668.1|Name=mRNA_H-elongata_contig13809.2668.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1002bp|location=Sequence derived from alignment at H-elongata_contig13809:1379..2380+ (Himanthalia elongata Himel1 dioecious)
CTGGCGATGCTGCATACGATTGCCCACGCGACCGCGGTGCTCGCGCTTGG TGCCGGCGCTGTGTCTTTTACACACATCGTGAAATCAGCTGAGCCCGTCT TCACAGCCGGCTTCTCCGCCATTCTCCTCGGCCAGACCTTCCCACTCCCT GTCTACGGTTCTCTCATTCCCATCATCGCAGGGGTGTCGCTTGCCTCCAT TAAGGAGCTCTCTTTTTCTTGGGTCGCTTTCGGAAACGCGATGGGGTCCA ACACGGCGTCGGCGCTGCGGGGCATCGTAGGAAAGAAGCAGATGGGTAAG CCGGTGGGCGAGAACATGACACCCGCCAACCTGTACGCCGTTCTCACGGT GCTGGCGCTCTGCTTCCTTACCCCGGTGTCCTTGCTGGTGGAAGGAAAAA AGTTCAAACCCGCGTGGGATGCGGCGATCGCTGCGGGCGCGACCTCGAAG AGTCTCACCACGACCGTCCTGACGTCCGGCCTGCTGTACTACCTCTACAA CGAAGTCGCATTTTTGGCGCTGGACTCCGTCAACCCAGTCACGGTGAGTG ACCGGCTGATTCTGTAGAGAGCCCCCTACAGTGGCATTGCAACCTGAAAA GGCGTTAACCCGGCGCACGATACTTGGCGTAGAAATAAGCCTTCGAGACT AGGATTAATTGCTCAATTGCTCTATCCATTAAAACCACGACATTGGTACG GGGGTGGTTTGTTTCAATCAGGAGACGGATCGTATGCGTCGCACACATTG CGCGAGGAGTTCCAGCTTTTAAGTGGGATGTAGAGAGAGCTTAAGAAGTC ACCGTTCCGTCGCGCCCTCGCGCTTCCCGCCTTTTCTATCCAGCACGCCG TCGGTAACACGATCAAGCGCGTCGTCATCATCGTGTCTGCGTGCATCGTA TTCCGCACGCCCATGACGCCGCTAGCAATCGCGGGTTCATCTATCGCGAT ACTGGGGACACTTCTGTATTCGCTTGTTAAGGCTCATTACGCGAAGAAGT AA
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Coding sequence (CDS) from alignment at H-elongata_contig13809:1379..2380+

>mRNA_H-elongata_contig13809.2668.1 ID=mRNA_H-elongata_contig13809.2668.1|Name=mRNA_H-elongata_contig13809.2668.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig13809:1379..2380+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCATACGATTGCCCACGCGACCGCGGTGCTCGCGCTTGGTGCCGG
CGCTGTGTCTTTTACACACATCGTGAAATCAGCTGAGCCCGTCTTCACAG
CCGGCTTCTCCGCCATTCTCCTCGGCCAGACCTTCCCACTCCCTGTCTAC
GGTTCTCTCATTCCCATCATCGCAGGGGTGTCGCTTGCCTCCATTAAGGA
GCTCTCTTTTTCTTGGGTCGCTTTCGGAAACGCGATGGGGTCCAACACGG
CGTCGGCGCTGCGGGGCATCGTAGGAAAGAAGCAGATGGGTAAGCCGGTG
GGCGAGAACATGACACCCGCCAACCTGTACGCCGTTCTCACGGTGCTGGC
GCTCTGCTTCCTTACCCCGGTGTCCTTGCTGGTGGAAGGAAAAAAGTTCA
AACCCGCGTGGGATGCGGCGATCGCTGCGGGCGCGACCTCGAAGAGTCTC
ACCACGACCGTCCTGACGTCCGGCCTGCTGTACTACCTCTACAACGAAGT
CGCATTTTTGGCGCTGGACTCCGTCAACCCAGTCACGATGCTGCATACGA
TTGCCCACGCGACCGCGGTGCTCGCGCTTGGTGCCGGCGCTGTGTCTTTT
ACACACATCGTGAAATCAGCTGAGCCCGTCTTCACAGCCGGCTTCTCCGC
CATTCTCCTCGGCCAGACCTTCCCACTCCCTGTCTACGGTTCTCTCATTC
CCATCATCGCAGGGGTGTCGCTTGCCTCCATTAAGGAGCTCTCTTTTTCT
TGGGTCGCTTTCGGAAACGCGATGGGGTCCAACACGGCGTCGGCGCTGCG
GGGCATCGTAGGAAAGAAGCAGATGGGTAAGCCGGTGGGCGAGAACATGA
CACCCGCCAACCTGTACGCCGTTCTCACGGTGCTGGCGCTCTGCTTCCTT
ACCCCGGTGTCCTTGCTGGTGGAAGGAAAAAAGTTCAAACCCGCGTGGGA
TGCGGCGATCGCTGCGGGCGCGACCTCGAAGAGTCTCACCACGACCGTCC
TGACGTCCGGCCTGCTGTACTACCTCTACAACGAAGTCGCATTTTTGGCG
CTGGACTCCGTCAACCCAGTCACGCACGCCGTCGGTAACACGATCAAGCG
CGTCGTCATCATCGTGTCTGCGTGCATCGTATTCCGCACGCCCATGACGC
CGCTAGCAATCGCGGGTTCATCTATCGCGATACTGGGGACACTTCTGTAT
TCGCTTGTTAAGGCTCATTACGCGAAGAAGTAACACGCCGTCGGTAACAC
GATCAAGCGCGTCGTCATCATCGTGTCTGCGTGCATCGTATTCCGCACGC
CCATGACGCCGCTAGCAATCGCGGGTTCATCTATCGCGATACTGGGGACA
CTTCTGTATTCGCTTGTTAAGGCTCATTACGCGAAGAAGTAA
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