mRNA_H-elongata_contig138049.2667.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138049.2667.1
Unique NamemRNA_H-elongata_contig138049.2667.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138049.2667.1 vs. uniprot
Match: A0A6H5J7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Y8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11
Identity = 34/102 (33.33%), Postives = 46/102 (45.10%), Query Frame = 1 
Query:    1 RVNEFPLGCIAPITIMWSPPDPVKESE---------------------------------------AVPSVKEEDCDEFRRAWLWVHPSAAKEALQQIKKAC 189
            R NEFPLGC+AP+T++W+P D    +                                          P   EE  ++ RR W WVHP+AAKEAL++I+KAC
Sbjct:  139 RANEFPLGCVAPVTVLWAPSDSAASANNEDARKNDHDADGNNGTSAPEXXXXXXXXXXXXXXXXXGGAPDGLEEQEEDVRRVWAWVHPAAAKEALREIRKAC 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138049.2667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7Y8_9PHAE1.380e-1133.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138049contigH-elongata_contig138049:837..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue7.9e-09
Seed eggNOG ortholog2880.D7FNE0
Preferred namePOP1
KEGG rclassRC00037,RC00094
KEGG koko:K01164,ko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko03008,ko03013,map00565,map01100,map03008,map03013
GOsGO:0000049,GO:0000171,GO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005697,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006379,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016078,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034963,GO:0034965,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
EggNOG free text desc.ribonuclease MRP activity
EggNOG OGsKOG3322@1,KOG3322@2759
EC3.1.26.5
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease P/MRP, subunit POP1
Ec32 orthologEc-22_001370.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.5734184-CDS-H-elongata_contig138049:836..10251622929819.5734184-CDS-H-elongata_contig138049:836..1025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138049 837..1025 +
1691679170.110813-CDS-H-elongata_contig138049:836..10251691679170.110813-CDS-H-elongata_contig138049:836..1025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138049 837..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138049.2667.1prot_H-elongata_contig138049.2667.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138049 837..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138049.2667.1

>prot_H-elongata_contig138049.2667.1 ID=prot_H-elongata_contig138049.2667.1|Name=mRNA_H-elongata_contig138049.2667.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
RVNEFPLGCIAPITIMWSPPDPVKESEAVPSVKEEDCDEFRRAWLWVHPS
AAKEALQQIKKAC
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mRNA from alignment at H-elongata_contig138049:837..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138049.2667.1 ID=mRNA_H-elongata_contig138049.2667.1|Name=mRNA_H-elongata_contig138049.2667.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig138049:837..1025+ (Himanthalia elongata Himel1 dioecious)
AGGGTGAACGAGTTTCCGCTGGGTTGCATTGCGCCCATCACCATCATGTG
GAGCCCGCCCGACCCTGTCAAGGAGAGCGAGGCGGTGCCGTCCGTCAAGG
AAGAGGACTGCGACGAATTTCGGCGCGCGTGGTTGTGGGTGCACCCGTCG
GCCGCGAAGGAGGCGTTGCAGCAGATTAAGAAGGCGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig138049:837..1025+

>mRNA_H-elongata_contig138049.2667.1 ID=mRNA_H-elongata_contig138049.2667.1|Name=mRNA_H-elongata_contig138049.2667.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig138049:837..1025+ (Himanthalia elongata Himel1 dioecious)
AGGGTGAACGAGTTTCCGCTGGGTTGCATTGCGCCCATCACCATCATGTG
GAGCCCGCCCGACCCTGTCAAGGAGAGCGAGGCGGTGCCGTCCGTCAAGG
AAGAGGACTGCGACGAATTTCGGCGCGCGTGGTTGTGGGTGCACCCGTCG
GCCGCGAAGGAGGCGTTGCAGCAGATTAAGAAGGCGTGCAGGGTGAACGA
GTTTCCGCTGGGTTGCATTGCGCCCATCACCATCATGTGGAGCCCGCCCG
ACCCTGTCAAGGAGAGCGAGGCGGTGCCGTCCGTCAAGGAAGAGGACTGC
GACGAATTTCGGCGCGCGTGGTTGTGGGTGCACCCGTCGGCCGCGAAGGA
GGCGTTGCAGCAGATTAAGAAGGCGTGC
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