mRNA_H-elongata_contig138029.2663.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig138029.2663.1
Unique NamemRNA_H-elongata_contig138029.2663.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig138029.2663.1 vs. uniprot
Match: D8LF76_ECTSI (Carbohydrate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF76_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.600e-9
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   91 VSVSAAATLALVRSWKKVQEASRAGRIVESGAQIVLAIDIGSSSVRCSAYTVGSSPSLLSGC 276
            +SV A AT AL R  ++    +RA  IV  G +++LA+DIGSSSVRCSAYTVGS P L+ GC
Sbjct:    5 LSVLAVATAALTRERRRASRVARAKSIVRRGVRVLLAVDIGSSSVRCSAYTVGSPPVLVPGC 66
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BLAST of mRNA_H-elongata_contig138029.2663.1 vs. uniprot
Match: A0A6H5L722_9PHAE (FGGY_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L722_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.700e-9
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   28 TWGAAVTMSSSSQAIFRALFVVSVSAAATLALVRSWKKVQEASRAGRIVESGAQIVLAIDIGSSSVRCSAYTVGSSPSLLSGC 276
            TW ++  + +++ A   A   +SV A AT A+ R  ++    +RA  IV  G +++LAIDIGSSSVRCSAYTVGS P L+ GC
Sbjct:  500 TWDSSSPVGATASADTMA-GALSVLAVATAAVTRERRRASRVARAKMIVRRGVRVLLAIDIGSSSVRCSAYTVGSPPMLVPGC 581
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig138029.2663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF76_ECTSI3.600e-956.45Carbohydrate kinase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5L722_9PHAE3.700e-946.99FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig138029contigH-elongata_contig138029:232..655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue9.9e-08
Seed eggNOG ortholog2880.D8LF76
KEGG rclassRC00002,RC00017
KEGG koko:K00851
KEGG ReactionR01737
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
EggNOG free text desc.glycerol kinase activity
EggNOG OGsCOG0554@1,KOG2517@2759
EC2.7.1.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.2377915-CDS-H-elongata_contig138029:231..2531622929819.2377915-CDS-H-elongata_contig138029:231..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138029 232..253 +
1691679170.0114818-CDS-H-elongata_contig138029:231..2531691679170.0114818-CDS-H-elongata_contig138029:231..253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138029 232..253 +
1622929819.255217-CDS-H-elongata_contig138029:397..6541622929819.255217-CDS-H-elongata_contig138029:397..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138029 398..654 +
1691679170.0226638-CDS-H-elongata_contig138029:397..6541691679170.0226638-CDS-H-elongata_contig138029:397..654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig138029 398..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig138029.2663.1prot_H-elongata_contig138029.2663.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig138029 232..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig138029.2663.1

>prot_H-elongata_contig138029.2663.1 ID=prot_H-elongata_contig138029.2663.1|Name=mRNA_H-elongata_contig138029.2663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
HLSRRYEGFTWGAAVTMSSSSQAIFRALFVVSVSAAATLALVRSWKKVQE
ASRAGRIVESGAQIVLAIDIGSSSVRCSAYTVGSSPSLLSGCT
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mRNA from alignment at H-elongata_contig138029:232..655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig138029.2663.1 ID=mRNA_H-elongata_contig138029.2663.1|Name=mRNA_H-elongata_contig138029.2663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=424bp|location=Sequence derived from alignment at H-elongata_contig138029:232..655+ (Himanthalia elongata Himel1 dioecious)
CACCTCTCACGGCGCTACGAAGGTGTGGATGTTCGGAGAGTTGGAATGAG
TTCAAGTTTTTTTAAATAAAAACAGTTCGCAGAAAGAAACTTGAAGCCGT
TTGTGCCTGCGAAATCCCGCGAGCTTCGCCCGCTCAAACAAATGTTTCAC
AATGTTTTCGCGATAGGTTTCACTTGGGGCGCAGCAGTCACCATGAGCTC
TTCAAGCCAAGCAATATTTCGCGCGTTGTTTGTGGTCTCGGTATCAGCGG
CGGCGACTTTAGCACTAGTTCGAAGCTGGAAAAAGGTACAAGAAGCATCA
CGTGCTGGGAGGATCGTTGAATCCGGCGCTCAGATAGTGCTGGCCATCGA
TATCGGCAGCTCGTCCGTGCGTTGCTCAGCGTACACGGTTGGTTCATCAC
CATCGCTCTTGTCGGGTTGCACGG
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Coding sequence (CDS) from alignment at H-elongata_contig138029:232..655+

>mRNA_H-elongata_contig138029.2663.1 ID=mRNA_H-elongata_contig138029.2663.1|Name=mRNA_H-elongata_contig138029.2663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig138029:232..655+ (Himanthalia elongata Himel1 dioecious)
CACCTCTCACGGCGCTACGAAGCACCTCTCACGGCGCTACGAAGGTTTCA
CTTGGGGCGCAGCAGTCACCATGAGCTCTTCAAGCCAAGCAATATTTCGC
GCGTTGTTTGTGGTCTCGGTATCAGCGGCGGCGACTTTAGCACTAGTTCG
AAGCTGGAAAAAGGTACAAGAAGCATCACGTGCTGGGAGGATCGTTGAAT
CCGGCGCTCAGATAGTGCTGGCCATCGATATCGGCAGCTCGTCCGTGCGT
TGCTCAGCGTACACGGTTGGTTCATCACCATCGCTCTTGTCGGGTTGCAC
GGTTTCACTTGGGGCGCAGCAGTCACCATGAGCTCTTCAAGCCAAGCAAT
ATTTCGCGCGTTGTTTGTGGTCTCGGTATCAGCGGCGGCGACTTTAGCAC
TAGTTCGAAGCTGGAAAAAGGTACAAGAAGCATCACGTGCTGGGAGGATC
GTTGAATCCGGCGCTCAGATAGTGCTGGCCATCGATATCGGCAGCTCGTC
CGTGCGTTGCTCAGCGTACACGGTTGGTTCATCACCATCGCTCTTGTCGG
GTTGCACG
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