mRNA_H-elongata_contig137809.2655.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 189 bits (481), Expect = 7.700e-50 Identity = 125/276 (45.29%), Postives = 156/276 (56.52%), Query Frame = 1
Query: 325 AASNAQFVDNTA-QNGGALFVTYGVSVELGEETNFTSNSA--------LLNGG--------------------AVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
A N FV+N+A NGGAL++T SV G T F S LLNG VGS A DS +S E+S + I G T+F NNT G +GG LA++ L++ ++ T F+ N+AD++GGAV++ T IGP F +VIF N AQ GG V A GSG + D+ PTTF C F N A ATGGAVDSASGQD+F T+F GN A GGALRL G S+ +C F ENIS GEG VSNVG +S +N+ F N
Sbjct: 2143 AFHNTSFVNNSAGTNGGALWLTDS-SVSWGGGTEFISXXXXXXXXXXXLLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQ---LLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGN 2414
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 185 bits (469), Expect = 2.320e-48 Identity = 121/276 (43.84%), Postives = 157/276 (56.88%), Query Frame = 1
Query: 325 AASNAQFVDNTA-QNGGALFVTYGVSVELGEETNFTSNSAL--------LNGG--------------------AVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
A +N FV+N+A NGGAL++T SV G T F S LNG VGS A DS +S E+S + I G T+F NNT G +GG LA++ L++ ++ T+F+ N+A+++GGAV++ T IGP F +VIF N AQ GG V + GSG + D+ PTTF C F N A ATGGAVDSASGQD+F T+F GN A GGALRL G S+ +C F EN+S GEG VSNVG +S +N+ F N
Sbjct: 230 AFNNTSFVNNSAGSNGGALWLTDS-SVSWGGGTEFISXXXXXXXXXXXXLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQ---LLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGN 501
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 181 bits (460), Expect = 4.190e-47 Identity = 104/217 (47.93%), Postives = 132/217 (60.83%), Query Frame = 1
Query: 418 TNFTSNSALLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSN-NTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
TNFTSN A +GGA+ S LDSE + ES ++ GTT+F NN CG +GGG+A+ ++ D+ +F++NTA VSGGAVF+ G F F+ N AQ GG V GSG + ++ E NPTTFD C F+GN A ATGGA+D+A+G D FV T FE N A GGALRL G SI +C F EN S G G VSN+G +S+ F N
Sbjct: 687 TNFTSNQAFFDGGAIVSPQLDSEYNPSESTLNFNGTTTFFNNRCGGNGGGMALYGGCALVIDTEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIE--PPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGN 901
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.570e-46 Identity = 99/217 (45.62%), Postives = 133/217 (61.29%), Query Frame = 1
Query: 415 ETNFTSNSALLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
+T N AL++GGAVGS A DS +S E+S + I G T+F NNT G +GG LA++ L++ ++ ++F+ N+AD++GG V++ T IGP F +VIF N+A GG + PTTF C F N ATGGAVDSASGQD+F T+F GN A GGALRL G S+++C F EN+S GEG VSNVG +S +N+ F N
Sbjct: 298 DTKVVRNGALVDGGAVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGALL-------------------PTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGN 495
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 178 bits (452), Expect = 4.750e-46 Identity = 100/207 (48.31%), Postives = 130/207 (62.80%), Query Frame = 1
Query: 445 LNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
L+GG +GS + DS +S++ S + + GTT+F NNTCGA+GG LA++ L V + N +F+ N A+V+GGAVF+ GT GP+F F+ N AQ GG V GSG + + NPTTFD C FI N A ATGGA+DSA+GQD FV + F+GN A GG LRL G S+D C F +NIS G VSN+G L + N F N
Sbjct: 535 LDGGVIGSFSTDS-VSNQGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNL--KENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGN 738
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 159 bits (401), Expect = 2.540e-39 Identity = 88/206 (42.72%), Postives = 122/206 (59.22%), Query Frame = 1
Query: 448 NGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
+GG VGS LDS + + S + + LA++ L+V + NT F+ NTA V+GGA+F+ GT +GP F N+ + N AQ GG + GSGT+ E + PTTF++C F N A ATGGAVD+A+GQD FV ++FEGN A GGALRL G +++C F EN+S G G VSN+G++S+ +N F N
Sbjct: 256 DGGVVGSFVLDSLYNPQGSYLIVXXXXXXXXXXXXXXXXALALLGGLSVTIGTENTVFVGNTAAVAGGAIFVSGTAVGPTFVNISLVSNSAQVGGAISLIGSGTSFN---PEDYTPAPTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRN 458
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 159 bits (401), Expect = 2.790e-39 Identity = 93/205 (45.37%), Postives = 121/205 (59.02%), Query Frame = 1
Query: 451 GGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
GGA+ S + DSE + ES + I GTT+F NNTCG +GG LA+ + ++ ++ + +F N+A +GGAVF+ G IGP F +V F+ N+AQ GG GSG DR PT FD C FI N A +GGAVDSA+GQDI V ++F+GN A GGALRL G +SG EG VSN+G +S NS F N
Sbjct: 707 GGAMMSPSYDSEYNPLESSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGN----DRGMLSPIIPTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGN 907
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 158 bits (400), Expect = 3.650e-39 Identity = 97/232 (41.81%), Postives = 123/232 (53.02%), Query Frame = 1
Query: 370 GALFVTYGVSVELGEETNFTSNSALLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
GA+FV G SV V S LDS + S + I G T+F NNTCG GGGLA L+V D+ TF N A+V+GGAVF+ G +G VF V GSG E +PTTFD C F+GN A ATGGA +SA+GQD FV +F GN A GGALR+ G S+++C F +N+S GEG +SN+G++S + YF DN
Sbjct: 479 GAVFVVNGSSVXXXXXXXXXXXXXXXXXXXVASPILDSVYNLRSSTLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEW--PSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDN 708
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.530e-35 Identity = 98/261 (37.55%), Postives = 140/261 (53.64%), Query Frame = 1
Query: 304 YVVYNSTAASNAQ----FVDNTAQNGGALFVTYGVSVELGEETNFTSNSALLNGGAV-GSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQ--SLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
Y+ + TA N V++T G +V ET FTSN A GG + SSA D +S+ I + TT F NNT +G + + + +L +F+ + +F+ N+A V+GGA+F+ G GP+F V F N A+ GG V + G + V+NPTTFD C F+ N +TGGA++SA+G+D F ++FEGN A GGALRL G +C F N + GEG VSN+GY+S N++F N
Sbjct: 578 YISWAGTAEFNGNSALSLVNSTLGEEGGAASVLSCNVSWTGETIFTSNVAQSEGGGITASSANDGILSN----ITMNATTIFFNNTAATNGRAIVLFEDAALNSIFNMD-ISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCGI------EPSGVDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGN 827
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 145 bits (367), Expect = 8.700e-35 Identity = 87/208 (41.83%), Postives = 121/208 (58.17%), Query Frame = 1
Query: 442 LLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
L +GGAV ++AL S SI+ I GTT F++N+ G +GGG+A+ + + + + +FL N+A V+G A+F+ IGP F + GSGT + D PTTFD C FIGN A +TGGA++SA+G+D ++FEGN A GGALRL G I +C F EN S GEG VSN+G++S+ TN+ F N
Sbjct: 795 LGDGGAVATNAL----STSNSILFINGTTIFSDNSAGGNGGGMALFVDVALNIGTVDVSFLGNSAGVAGXAMFVSSVSIGPRFNXXXXXXXXXXXXXXISIFGSGTDESGDL-------PTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGN 991 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig137809.2655.1 >prot_H-elongata_contig137809.2655.1 ID=prot_H-elongata_contig137809.2655.1|Name=mRNA_H-elongata_contig137809.2655.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=356bp NTTFSKNAAKARSGGALYLEDSTAIWDSESQFISNTAESEGGAISVTRDSback to top mRNA from alignment at H-elongata_contig137809:15..1172+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig137809.2655.1 ID=mRNA_H-elongata_contig137809.2655.1|Name=mRNA_H-elongata_contig137809.2655.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1158bp|location=Sequence derived from alignment at H-elongata_contig137809:15..1172+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig137809:15..1172+ >mRNA_H-elongata_contig137809.2655.1 ID=mRNA_H-elongata_contig137809.2655.1|Name=mRNA_H-elongata_contig137809.2655.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2136bp|location=Sequence derived from alignment at H-elongata_contig137809:15..1172+ (Himanthalia elongata Himel1 dioecious)back to top |