mRNA_H-elongata_contig137809.2655.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137809.2655.1
Unique NamemRNA_H-elongata_contig137809.2655.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 7.700e-50
Identity = 125/276 (45.29%), Postives = 156/276 (56.52%), Query Frame = 1
Query:  325 AASNAQFVDNTA-QNGGALFVTYGVSVELGEETNFTSNSA--------LLNGG--------------------AVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            A  N  FV+N+A  NGGAL++T   SV  G  T F S           LLNG                      VGS A DS +S E+S + I G T+F NNT G +GG LA++  L++  ++  T F+ N+AD++GGAV++  T IGP F +VIF  N AQ GG V A GSG     + D+     PTTF  C F  N A ATGGAVDSASGQD+F  T+F GN A  GGALRL G  S+ +C F ENIS  GEG  VSNVG +S  +N+ F  N
Sbjct: 2143 AFHNTSFVNNSAGTNGGALWLTDS-SVSWGGGTEFISXXXXXXXXXXXLLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQ---LLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGN 2414          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.320e-48
Identity = 121/276 (43.84%), Postives = 157/276 (56.88%), Query Frame = 1
Query:  325 AASNAQFVDNTA-QNGGALFVTYGVSVELGEETNFTSNSAL--------LNGG--------------------AVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            A +N  FV+N+A  NGGAL++T   SV  G  T F S            LNG                      VGS A DS +S E+S + I G T+F NNT G +GG LA++  L++  ++  T+F+ N+A+++GGAV++  T IGP F +VIF  N AQ GG V + GSG     + D+     PTTF  C F  N A ATGGAVDSASGQD+F  T+F GN A  GGALRL G  S+ +C F EN+S  GEG  VSNVG +S  +N+ F  N
Sbjct:  230 AFNNTSFVNNSAGSNGGALWLTDS-SVSWGGGTEFISXXXXXXXXXXXXLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQ---LLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGN 501          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 4.190e-47
Identity = 104/217 (47.93%), Postives = 132/217 (60.83%), Query Frame = 1
Query:  418 TNFTSNSALLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSN-NTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            TNFTSN A  +GGA+ S  LDSE +  ES ++  GTT+F NN CG +GGG+A+     ++ D+    +F++NTA VSGGAVF+     G  F    F+ N AQ GG V   GSG +  ++  E    NPTTFD C F+GN A ATGGA+D+A+G D FV T FE N A  GGALRL G  SI +C F EN S  G G  VSN+G +S+     F  N
Sbjct:  687 TNFTSNQAFFDGGAIVSPQLDSEYNPSESTLNFNGTTTFFNNRCGGNGGGMALYGGCALVIDTEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIE--PPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGN 901          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.570e-46
Identity = 99/217 (45.62%), Postives = 133/217 (61.29%), Query Frame = 1
Query:  415 ETNFTSNSALLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            +T    N AL++GGAVGS A DS +S E+S + I G T+F NNT G +GG LA++  L++  ++  ++F+ N+AD++GG V++  T IGP F +VIF  N+A  GG +                    PTTF  C F  N   ATGGAVDSASGQD+F  T+F GN A  GGALRL G  S+++C F EN+S  GEG  VSNVG +S  +N+ F  N
Sbjct:  298 DTKVVRNGALVDGGAVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGALL-------------------PTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGN 495          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 4.750e-46
Identity = 100/207 (48.31%), Postives = 130/207 (62.80%), Query Frame = 1
Query:  445 LNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            L+GG +GS + DS +S++ S + + GTT+F NNTCGA+GG LA++  L V   + N +F+ N A+V+GGAVF+ GT  GP+F    F+ N AQ GG V   GSG     +  +    NPTTFD C FI N A ATGGA+DSA+GQD FV + F+GN A  GG LRL G  S+D C F +NIS    G  VSN+G L +  N  F  N
Sbjct:  535 LDGGVIGSFSTDS-VSNQGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNL--KENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGN 738          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.540e-39
Identity = 88/206 (42.72%), Postives = 122/206 (59.22%), Query Frame = 1
Query:  448 NGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            +GG VGS  LDS  + + S + +                 LA++  L+V   + NT F+ NTA V+GGA+F+ GT +GP F N+  + N AQ GG +   GSGT+      E +   PTTF++C F  N A ATGGAVD+A+GQD FV ++FEGN A  GGALRL G   +++C F EN+S  G G  VSN+G++S+ +N  F  N
Sbjct:  256 DGGVVGSFVLDSLYNPQGSYLIVXXXXXXXXXXXXXXXXALALLGGLSVTIGTENTVFVGNTAAVAGGAIFVSGTAVGPTFVNISLVSNSAQVGGAISLIGSGTSFN---PEDYTPAPTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRN 458          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.790e-39
Identity = 93/205 (45.37%), Postives = 121/205 (59.02%), Query Frame = 1
Query:  451 GGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            GGA+ S + DSE +  ES + I GTT+F NNTCG +GG LA+  + ++  ++ + +F  N+A  +GGAVF+ G  IGP F +V F+ N+AQ GG     GSG     DR       PT FD C FI N A  +GGAVDSA+GQDI V ++F+GN A  GGALRL G            +SG  EG  VSN+G +S   NS F  N
Sbjct:  707 GGAMMSPSYDSEYNPLESSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGN----DRGMLSPIIPTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSAEVGGALRLAGXXXXXXXXXXXXVSGRQEGAAVSNIGLVSTMANSSFTGN 907          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.650e-39
Identity = 97/232 (41.81%), Postives = 123/232 (53.02%), Query Frame = 1
Query:  370 GALFVTYGVSVELGEETNFTSNSALLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            GA+FV  G SV                   V S  LDS  +   S + I G T+F NNTCG  GGGLA    L+V  D+   TF  N A+V+GGAVF+ G  +G VF               V   GSG        E    +PTTFD C F+GN A ATGGA +SA+GQD FV  +F GN A  GGALR+ G  S+++C F +N+S  GEG  +SN+G++S   + YF DN
Sbjct:  479 GAVFVVNGSSVXXXXXXXXXXXXXXXXXXXVASPILDSVYNLRSSTLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEW--PSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDN 708          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.530e-35
Identity = 98/261 (37.55%), Postives = 140/261 (53.64%), Query Frame = 1
Query:  304 YVVYNSTAASNAQ----FVDNTAQNGGALFVTYGVSVELGEETNFTSNSALLNGGAV-GSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQ--SLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            Y+ +  TA  N       V++T    G        +V    ET FTSN A   GG +  SSA D  +S+    I +  TT F NNT   +G  + + +  +L  +F+ +  +F+ N+A V+GGA+F+ G   GP+F  V F  N A+ GG V +   G       +   V+NPTTFD C F+ N   +TGGA++SA+G+D F  ++FEGN A  GGALRL G     +C F  N +  GEG  VSN+GY+S   N++F  N
Sbjct:  578 YISWAGTAEFNGNSALSLVNSTLGEEGGAASVLSCNVSWTGETIFTSNVAQSEGGGITASSANDGILSN----ITMNATTIFFNNTAATNGRAIVLFEDAALNSIFNMD-ISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCGI------EPSGVDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGN 827          
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.700e-35
Identity = 87/208 (41.83%), Postives = 121/208 (58.17%), Query Frame = 1
Query:  442 LLNGGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLFDSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATGSGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTLFEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNSYFQDN 1065
            L +GGAV ++AL    S   SI+ I GTT F++N+ G +GGG+A+   + +   + + +FL N+A V+G A+F+    IGP F               +   GSGT  + D        PTTFD C FIGN A +TGGA++SA+G+D    ++FEGN A  GGALRL G   I +C F EN S  GEG  VSN+G++S+ TN+ F  N
Sbjct:  795 LGDGGAVATNAL----STSNSILFINGTTIFSDNSAGGNGGGMALFVDVALNIGTVDVSFLGNSAGVAGXAMFVSSVSIGPRFNXXXXXXXXXXXXXXISIFGSGTDESGDL-------PTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGN 991          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137809.2655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FHG7_ECTSI7.700e-5045.29LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHH1_ECTSI2.320e-4843.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIY0_ECTSI4.190e-4747.93Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KR67_9PHAE1.570e-4645.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G301_ECTSI4.750e-4648.31Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2Z8_ECTSI2.540e-3942.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2X5_ECTSI2.790e-3945.37Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FTL7_ECTSI3.650e-3941.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K1P8_9PHAE2.530e-3537.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0E9_9PHAE8.700e-3541.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137809contigH-elongata_contig137809:15..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue2.4e-46
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size1068
Cds size1068
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.5049217-CDS-H-elongata_contig137809:14..3431622929818.5049217-CDS-H-elongata_contig137809:14..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137809 15..343 +
1691679169.6239245-CDS-H-elongata_contig137809:14..3431691679169.6239245-CDS-H-elongata_contig137809:14..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137809 15..343 +
1622929818.5164282-CDS-H-elongata_contig137809:433..11721622929818.5164282-CDS-H-elongata_contig137809:433..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137809 434..1172 +
1691679169.6415083-CDS-H-elongata_contig137809:433..11721691679169.6415083-CDS-H-elongata_contig137809:433..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137809 434..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137809.2655.1prot_H-elongata_contig137809.2655.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137809 15..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137809.2655.1

>prot_H-elongata_contig137809.2655.1 ID=prot_H-elongata_contig137809.2655.1|Name=mRNA_H-elongata_contig137809.2655.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=356bp
NTTFSKNAAKARSGGALYLEDSTAIWDSESQFISNTAESEGGAISVTRDS
NVLWAGETFFSKNVASSRSGGALCVANGSIAIWTGPSQFLNNFALFHGGA
VYVVYNSTAASNAQFVDNTAQNGGALFVTYGVSVELGEETNFTSNSALLN
GGAVGSSALDSEMSDEESIIDIKGTTSFTNNTCGAHGGGLAMVQSLTVLF
DSNNTTFLQNTADVSGGAVFIVGTVIGPVFRNVIFMENYAQTGGGVHATG
SGTAVTLDRDEGHVENPTTFDECIFIGNFAFATGGAVDSASGQDIFVRTL
FEGNVARAGGALRLGGMTSIDDCVFDENISGLGEGPTVSNVGYLSNFTNS
YFQDNS
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mRNA from alignment at H-elongata_contig137809:15..1172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137809.2655.1 ID=mRNA_H-elongata_contig137809.2655.1|Name=mRNA_H-elongata_contig137809.2655.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1158bp|location=Sequence derived from alignment at H-elongata_contig137809:15..1172+ (Himanthalia elongata Himel1 dioecious)
AATACGACCTTTTCTAAGAATGCTGCCAAAGCAAGAAGCGGCGGTGCCCT GTATCTGGAAGATAGCACTGCAATCTGGGATTCGGAATCACAATTCATCT CAAATACTGCTGAATCCGAAGGTGGGGCAATAAGCGTTACGAGGGACAGC AACGTGCTATGGGCTGGTGAAACGTTTTTTTCTAAGAACGTCGCCAGTTC AAGAAGCGGCGGTGCCCTGTGCGTGGCGAATGGAAGCATTGCAATTTGGA CAGGACCATCACAATTCCTTAACAATTTTGCCTTATTCCACGGAGGGGCG GTGTACGTGGTGTATAACAGCACTGCTGCGTGGGAAGCACCATCAAGGTT TTCGGCAAATATCGCTCAATTTGATGGGGGTGCGGTGTATTCCAGTTACA ACGGATATCTGTTATGGAGGAGCAATGCGCAATTCGTAGACAACACAGCA CAGAACGGAGGAGCCCTCTTTGTCACATATGGTGTAAGTGTAGAATTGGG CGAAGAAACTAACTTCACCTCTAATAGTGCTCTATTGAACGGTGGTGCGG TGGGGTCGAGCGCACTCGACTCGGAGATGAGCGACGAAGAATCGATTATC GATATAAAGGGCACCACGAGCTTTACGAACAACACGTGCGGAGCCCACGG GGGAGGCCTGGCAATGGTTCAATCCCTAACCGTGTTATTCGACAGCAACA ATACCACATTTTTGCAAAATACGGCCGATGTTTCAGGTGGAGCCGTATTT ATTGTAGGCACCGTGATCGGACCGGTGTTTAGAAACGTGATATTTATGGA AAACTATGCCCAAACCGGTGGCGGCGTACATGCCACGGGAAGTGGAACCG CAGTGACTTTAGATAGAGATGAAGGTCATGTGGAAAATCCGACGACTTTC GACGAATGCATCTTCATTGGCAACTTTGCCTTCGCGACTGGTGGGGCGGT CGACAGCGCGTCTGGTCAGGATATTTTTGTTCGCACGTTATTCGAGGGCA ATGTGGCTAGGGCGGGGGGCGCGTTGAGGCTCGGTGGCATGACGTCCATA GACGATTGTGTTTTTGATGAAAATATTTCGGGACTAGGCGAAGGGCCAAC AGTGTCCAATGTTGGGTACTTATCCAACTTTACCAACAGCTATTTTCAGG ACAACTCC
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Coding sequence (CDS) from alignment at H-elongata_contig137809:15..1172+

>mRNA_H-elongata_contig137809.2655.1 ID=mRNA_H-elongata_contig137809.2655.1|Name=mRNA_H-elongata_contig137809.2655.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2136bp|location=Sequence derived from alignment at H-elongata_contig137809:15..1172+ (Himanthalia elongata Himel1 dioecious)
AATACGACCTTTTCTAAGAATGCTGCCAAAGCAAGAAGCGGCGGTGCCCT
GTATCTGGAAGATAGCACTGCAATCTGGGATTCGGAATCACAATTCATCT
CAAATACTGCTGAATCCGAAGGTGGGGCAATAAGCGTTACGAGGGACAGC
AACGTGCTATGGGCTGGTGAAACGTTTTTTTCTAAGAACGTCGCCAGTTC
AAGAAGCGGCGGTGCCCTGTGCGTGGCGAATGGAAGCATTGCAATTTGGA
CAGGACCATCACAATTCCTTAACAATTTTGCCTTATTCCACGGAGGGGCG
GTGTACGTGGTGTATAACAGCACTGCTGCAATACGACCTTTTCTAAGAAT
GCTGCCAAAGCAAGAAGCGGCGGTGCCCTGTATCTGGAAGATAGCACTGC
AATCTGGGATTCGGAATCACAATTCATCTCAAATACTGCTGAATCCGAAG
GTGGGGCAATAAGCGTTACGAGGGACAGCAACGTGCTATGGGCTGGTGAA
ACGTTTTTTTCTAAGAACGTCGCCAGTTCAAGAAGCGGCGGTGCCCTGTG
CGTGGCGAATGGAAGCATTGCAATTTGGACAGGACCATCACAATTCCTTA
ACAATTTTGCCTTATTCCACGGAGGGGCGGTGTACGTGGTGTATAACAGC
ACTGCTGCGAGCAATGCGCAATTCGTAGACAACACAGCACAGAACGGAGG
AGCCCTCTTTGTCACATATGGTGTAAGTGTAGAATTGGGCGAAGAAACTA
ACTTCACCTCTAATAGTGCTCTATTGAACGGTGGTGCGGTGGGGTCGAGC
GCACTCGACTCGGAGATGAGCGACGAAGAATCGATTATCGATATAAAGGG
CACCACGAGCTTTACGAACAACACGTGCGGAGCCCACGGGGGAGGCCTGG
CAATGGTTCAATCCCTAACCGTGTTATTCGACAGCAACAATACCACATTT
TTGCAAAATACGGCCGATGTTTCAGGTGGAGCCGTATTTATTGTAGGCAC
CGTGATCGGACCGGTGTTTAGAAACGTGATATTTATGGAAAACTATGCCC
AAACCGGTGGCGGCGTACATGCCACGGGAAGTGGAACCGCAGTGACTTTA
GATAGAGATGAAGGTCATGTGGAAAATCCGACGACTTTCGACGAATGCAT
CTTCATTGGCAACTTTGCCTTCGCGACTGGTGGGGCGGTCGACAGCGCGT
CTGGTCAGGATATTTTTGTTCGCACGTTATTCGAGGGCAATGTGGCTAGG
GCGGGGGGCGCGTTGAGGCTCGGTGGCATGACGTCCATAGACGATTGTGT
TTTTGATGAAAATATTTCGGGACTAGGCGAAGGGCCAACAGTGTCCAATG
TTGGGTACTTATCCAACTTTACCAACAGCTATTTTCAGGACAACTCCGAG
CAATGCGCAATTCGTAGACAACACAGCACAGAACGGAGGAGCCCTCTTTG
TCACATATGGTGTAAGTGTAGAATTGGGCGAAGAAACTAACTTCACCTCT
AATAGTGCTCTATTGAACGGTGGTGCGGTGGGGTCGAGCGCACTCGACTC
GGAGATGAGCGACGAAGAATCGATTATCGATATAAAGGGCACCACGAGCT
TTACGAACAACACGTGCGGAGCCCACGGGGGAGGCCTGGCAATGGTTCAA
TCCCTAACCGTGTTATTCGACAGCAACAATACCACATTTTTGCAAAATAC
GGCCGATGTTTCAGGTGGAGCCGTATTTATTGTAGGCACCGTGATCGGAC
CGGTGTTTAGAAACGTGATATTTATGGAAAACTATGCCCAAACCGGTGGC
GGCGTACATGCCACGGGAAGTGGAACCGCAGTGACTTTAGATAGAGATGA
AGGTCATGTGGAAAATCCGACGACTTTCGACGAATGCATCTTCATTGGCA
ACTTTGCCTTCGCGACTGGTGGGGCGGTCGACAGCGCGTCTGGTCAGGAT
ATTTTTGTTCGCACGTTATTCGAGGGCAATGTGGCTAGGGCGGGGGGCGC
GTTGAGGCTCGGTGGCATGACGTCCATAGACGATTGTGTTTTTGATGAAA
ATATTTCGGGACTAGGCGAAGGGCCAACAGTGTCCAATGTTGGGTACTTA
TCCAACTTTACCAACAGCTATTTTCAGGACAACTCC
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