mRNA_H-elongata_contig137720.2651.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137720.2651.1
Unique NamemRNA_H-elongata_contig137720.2651.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: D8LFI3_ECTSI (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI3_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 7.910e-33
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
            GASFEVLCLGRWWDSLER  WP G   A+M+DFEG YGDRRQELVFIG+GM +E  +  I  ALD CLLTDEEM VY+  RE
Sbjct:  499 GASFEVLCLGRWWDSLERELWPPGSAEAVMEDFEGKYGDRRQELVFIGMGMCEESTRGPIVKALDGCLLTDEEMEVYESVRE 580          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A836CKL1_9STRA (CobW/HypB/UreG, nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.090e-26
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
            G  FE+ CLGRWW S+ R  WPQGQEAAI +DFE  +GDRRQELVFIGL ++++  Q+ I SALD CLLTDEE  VY+ +R+
Sbjct:  593 GRHFEMQCLGRWWASVPRPAWPQGQEAAITEDFEEPHGDRRQELVFIGLDVANQKVQSIIASALDECLLTDEEWAVYEASRK 674          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A0G4HWR3_9ALVE (CobW C-terminal domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HWR3_9ALVE)

HSP 1 Score: 86.7 bits (213), Expect = 2.930e-19
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
            G +FE+  LG WWD  +R  WP+  E  I+ DFEG +GDRRQ+LVFIG  ++D   +  +  ALD+ LLTD E+  Y Q RE
Sbjct:   72 GRTFEMQLLGLWWDVRDREDWPEEFEEQILRDFEGEFGDRRQQLVFIGTSVADPKLRNELEDALDAALLTDAELEAYTQERE 153          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: K0RTA9_THAOC (CobW C-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTA9_THAOC)

HSP 1 Score: 89.4 bits (220), Expect = 5.640e-19
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGA---------YGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
            G+SFE+ CLGRWW +L R+QWP+     I+ DF+            GDRRQE+VFIG G+  + +++ IT  LDSCLLTDEE   +   R+
Sbjct:  325 GSSFEMQCLGRWWATLHRSQWPEENTEGILSDFDSVDHNESKGDTVGDRRQEIVFIGPGLGAKTSESAITEMLDSCLLTDEEWETFRLNRD 415          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A7S1ZNR7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZNR7_TRICV)

HSP 1 Score: 85.1 bits (209), Expect = 6.960e-19
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEG--------------AYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVY 231
            G SFE+ CLGRWW +L R QWP      I+ +F+                 GDRRQE+VFIG  +SD+ A++ +T ALDSCLLT EE  VY
Sbjct:   77 GRSFEMQCLGRWWATLPRDQWPPEAAETILAEFDDPNHVEDPTYPRDPVTVGDRRQEIVFIGPTLSDDDARSAVTEALDSCLLTREEWEVY 167          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A448ZE05_9STRA (CobW C-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZE05_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.390e-17
Identity = 43/96 (44.79%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEG-------------------AYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVY 231
            GASFE  CLG+WW +L R QWP+G +  ++ DF+                    + GDRRQE+VFIGLG      QA I   LD CLLTDEE   Y
Sbjct:  633 GASFEYKCLGQWWATLPRNQWPEGVDEYVLADFDDVQHPSEGTADGGDAASAPKSVGDRRQEVVFIGLGFGQVSKQALIRETLDGCLLTDEEYEEY 728          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A8J2SRV0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRV0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.510e-16
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQA 240
            G  F    +GRWW +L   ++P+   A+I+ DF+G  GDRRQE+VFIG+G   +  QA IT ALD+CLLTD+EM  Y  A
Sbjct:  528 GNHFAAELMGRWWATLPEDRYPEDMRASILSDFDGEDGDRRQEIVFIGVGAVAQ--QAAITEALDACLLTDDEMAAYRAA 605          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A6S8CKI4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CKI4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.840e-16
Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQ 237
            G  F+   LGRWW +L R  WP  Q  AI  DF+G +GDRRQE+VFIG+       Q  I  ALD+CLLTD+E  VY +
Sbjct:  524 GKFFDAPILGRWWATLPREYWPADQVEAIEADFDGQFGDRRQEIVFIGMDALSN--QKLIEDALDACLLTDDEFSVYTE 600          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A7J7Q1Y5_9CHLO (CobW C-terminal domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q1Y5_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 3.600e-15
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQ---GQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYD 234
            G  FE+   G WW ++   +WP    GQ   I+ DF+ A GDRRQE+VFIG GM DEG    I + LDS LLTDEE+ VY+
Sbjct:   17 GQHFEIREEGDWWAAVPDEEWPDAASGQRGIILADFQPAVGDRRQEIVFIGAGM-DEGK---ICAQLDSALLTDEELSVYN 93          
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A0M0K228_9EUKA (Cobalamin synthesis p47k n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K228_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 4.610e-15
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQAREVP 252
            G   E+  +GRWW ++ R+ WP+    +I+ D EG +GDRRQEL+FIG  +    A+A I +ALD+CL TD E+    +AR  P
Sbjct:  493 GKQLELSAMGRWWAAVPRSSWPEAHVGSILADCEGEWGDRRQELIFIGANL----AEAEIIAALDACLATDAELGELAKARGAP 572          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFI3_ECTSI7.910e-3370.73CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A836CKL1_9STRA1.090e-2662.20CobW/HypB/UreG, nucleotide-binding domain-containi... [more]
A0A0G4HWR3_9ALVE2.930e-1948.78CobW C-terminal domain-containing protein n=1 Tax=... [more]
K0RTA9_THAOC5.640e-1946.15CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S1ZNR7_TRICV6.960e-1947.25Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A448ZE05_9STRA4.390e-1744.79CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A8J2SRV0_9STRA1.510e-1650.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6S8CKI4_9STRA3.840e-1650.63Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7J7Q1Y5_9CHLO3.600e-1550.62CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A0M0K228_9EUKA4.610e-1544.05Cobalamin synthesis p47k n=1 Tax=Chrysochromulina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137720contigH-elongata_contig137720:77..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.4e-27
Seed eggNOG ortholog2880.D8LFI3
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
Ec32 orthologEc-04_002080.2
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.2395942-CDS-H-elongata_contig137720:76..1781622929818.2395942-CDS-H-elongata_contig137720:76..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137720 77..178 +
1691679169.5135758-CDS-H-elongata_contig137720:76..1781691679169.5135758-CDS-H-elongata_contig137720:76..178Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137720 77..178 +
1622929818.2510164-CDS-H-elongata_contig137720:660..8251622929818.2510164-CDS-H-elongata_contig137720:660..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137720 661..825 +
1691679169.5229638-CDS-H-elongata_contig137720:660..8251691679169.5229638-CDS-H-elongata_contig137720:660..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137720 661..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137720.2651.1prot_H-elongata_contig137720.2651.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137720 77..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137720.2651.1

>prot_H-elongata_contig137720.2651.1 ID=prot_H-elongata_contig137720.2651.1|Name=mRNA_H-elongata_contig137720.2651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLG
MSDEGAQACITSALDSCLLTDEEMRVYDQAREVPLHML*
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mRNA from alignment at H-elongata_contig137720:77..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137720.2651.1 ID=mRNA_H-elongata_contig137720.2651.1|Name=mRNA_H-elongata_contig137720.2651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=749bp|location=Sequence derived from alignment at H-elongata_contig137720:77..825+ (Himanthalia elongata Himel1 dioecious)
GGTGCGAGTTTCGAGGTGCTCTGCTTGGGTCGATGGTGGGACAGCCTGGA ACGCGCGCAGTGGCCTCAGGGCCAAGAGGCGGCCATTATGGATGACTTCG AGGTACGGTATAGTTAAAAGGGTGATGTTGCTTTTTGAAAGAGAAAAGAG AGTTAAAATAGAGCAACACGGACACAAGACAAAGGAATGTGGAGAAAAGA CGGAGATCACTTAAAGAGAAGAGATACGCGAGAATTCCCTCCCCCCTATC CTTCTAACTTTTTTGATCTCCCACAAAGAAACGTAATGGAAAAACTCCGA GAAAACGGCGTTGAAAAGATCAAATATTTTGTCGAAAACCGTATGTATAT GGTTTTGTTTTCCCCCCGCGACCCTCCCCTCTTTAGAAGGAAAGGGTTGT AGTGACAGAGATGCTTTTTTTTTGGCGGGGGGGGGGGGGGGGGTCCCCGA TAAGGCTTTACGGAAAAAGCTGCCCGGGCCGCGATGCTTTGCCCTGATTC TGTAAGTTGAAATGTTTTATCGCGTCTGGTGGGTTGGTGGACATGTGACA TGACGTGGTGGCCTTCCTGACTTTTGGTTGAAAGGGCGCGTATGGCGACA GAAGGCAGGAGCTGGTGTTCATCGGCCTCGGCATGAGCGATGAGGGCGCG CAAGCCTGCATCACATCCGCCCTAGACTCGTGTCTGCTTACGGACGAGGA GATGCGCGTCTATGACCAGGCCCGAGAGGTACCGTTACACATGTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig137720:77..825+

>mRNA_H-elongata_contig137720.2651.1 ID=mRNA_H-elongata_contig137720.2651.1|Name=mRNA_H-elongata_contig137720.2651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig137720:77..825+ (Himanthalia elongata Himel1 dioecious)
GGTGCGAGTTTCGAGGTGCTCTGCTTGGGTCGATGGTGGGACAGCCTGGA
ACGCGCGCAGTGGCCTCAGGGCCAAGAGGCGGCCATTATGGATGACTTCG
AGGGTGCGAGTTTCGAGGTGCTCTGCTTGGGTCGATGGTGGGACAGCCTG
GAACGCGCGCAGTGGCCTCAGGGCCAAGAGGCGGCCATTATGGATGACTT
CGAGGGCGCGTATGGCGACAGAAGGCAGGAGCTGGTGTTCATCGGCCTCG
GCATGAGCGATGAGGGCGCGCAAGCCTGCATCACATCCGCCCTAGACTCG
TGTCTGCTTACGGACGAGGAGATGCGCGTCTATGACCAGGCCCGAGAGGT
ACCGTTACACATGTTGTAAGGCGCGTATGGCGACAGAAGGCAGGAGCTGG
TGTTCATCGGCCTCGGCATGAGCGATGAGGGCGCGCAAGCCTGCATCACA
TCCGCCCTAGACTCGTGTCTGCTTACGGACGAGGAGATGCGCGTCTATGA
CCAGGCCCGAGAGGTACCGTTACACATGTTGTAA
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