mRNA_H-elongata_contig137720.2651.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: D8LFI3_ECTSI (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFI3_ECTSI) HSP 1 Score: 128 bits (322), Expect = 7.910e-33 Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
GASFEVLCLGRWWDSLER WP G A+M+DFEG YGDRRQELVFIG+GM +E + I ALD CLLTDEEM VY+ RE
Sbjct: 499 GASFEVLCLGRWWDSLERELWPPGSAEAVMEDFEGKYGDRRQELVFIGMGMCEESTRGPIVKALDGCLLTDEEMEVYESVRE 580
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A836CKL1_9STRA (CobW/HypB/UreG, nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL1_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.090e-26 Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
G FE+ CLGRWW S+ R WPQGQEAAI +DFE +GDRRQELVFIGL ++++ Q+ I SALD CLLTDEE VY+ +R+
Sbjct: 593 GRHFEMQCLGRWWASVPRPAWPQGQEAAITEDFEEPHGDRRQELVFIGLDVANQKVQSIIASALDECLLTDEEWAVYEASRK 674
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A0G4HWR3_9ALVE (CobW C-terminal domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HWR3_9ALVE) HSP 1 Score: 86.7 bits (213), Expect = 2.930e-19 Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
G +FE+ LG WWD +R WP+ E I+ DFEG +GDRRQ+LVFIG ++D + + ALD+ LLTD E+ Y Q RE
Sbjct: 72 GRTFEMQLLGLWWDVRDREDWPEEFEEQILRDFEGEFGDRRQQLVFIGTSVADPKLRNELEDALDAALLTDAELEAYTQERE 153
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: K0RTA9_THAOC (CobW C-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTA9_THAOC) HSP 1 Score: 89.4 bits (220), Expect = 5.640e-19 Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGA---------YGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQARE 246
G+SFE+ CLGRWW +L R+QWP+ I+ DF+ GDRRQE+VFIG G+ + +++ IT LDSCLLTDEE + R+
Sbjct: 325 GSSFEMQCLGRWWATLHRSQWPEENTEGILSDFDSVDHNESKGDTVGDRRQEIVFIGPGLGAKTSESAITEMLDSCLLTDEEWETFRLNRD 415
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A7S1ZNR7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZNR7_TRICV) HSP 1 Score: 85.1 bits (209), Expect = 6.960e-19 Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEG--------------AYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVY 231
G SFE+ CLGRWW +L R QWP I+ +F+ GDRRQE+VFIG +SD+ A++ +T ALDSCLLT EE VY
Sbjct: 77 GRSFEMQCLGRWWATLPRDQWPPEAAETILAEFDDPNHVEDPTYPRDPVTVGDRRQEIVFIGPTLSDDDARSAVTEALDSCLLTREEWEVY 167
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A448ZE05_9STRA (CobW C-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZE05_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 4.390e-17 Identity = 43/96 (44.79%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEG-------------------AYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVY 231
GASFE CLG+WW +L R QWP+G + ++ DF+ + GDRRQE+VFIGLG QA I LD CLLTDEE Y
Sbjct: 633 GASFEYKCLGQWWATLPRNQWPEGVDEYVLADFDDVQHPSEGTADGGDAASAPKSVGDRRQEVVFIGLGFGQVSKQALIRETLDGCLLTDEEYEEY 728
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A8J2SRV0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRV0_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.510e-16 Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQA 240
G F +GRWW +L ++P+ A+I+ DF+G GDRRQE+VFIG+G + QA IT ALD+CLLTD+EM Y A
Sbjct: 528 GNHFAAELMGRWWATLPEDRYPEDMRASILSDFDGEDGDRRQEIVFIGVGAVAQ--QAAITEALDACLLTDDEMAAYRAA 605
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A6S8CKI4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8CKI4_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.840e-16 Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQ 237
G F+ LGRWW +L R WP Q AI DF+G +GDRRQE+VFIG+ Q I ALD+CLLTD+E VY +
Sbjct: 524 GKFFDAPILGRWWATLPREYWPADQVEAIEADFDGQFGDRRQEIVFIGMDALSN--QKLIEDALDACLLTDDEFSVYTE 600
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A7J7Q1Y5_9CHLO (CobW C-terminal domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q1Y5_9CHLO) HSP 1 Score: 73.9 bits (180), Expect = 3.600e-15 Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQ---GQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYD 234
G FE+ G WW ++ +WP GQ I+ DF+ A GDRRQE+VFIG GM DEG I + LDS LLTDEE+ VY+
Sbjct: 17 GQHFEIREEGDWWAAVPDEEWPDAASGQRGIILADFQPAVGDRRQEIVFIGAGM-DEGK---ICAQLDSALLTDEELSVYN 93
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Match: A0A0M0K228_9EUKA (Cobalamin synthesis p47k n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K228_9EUKA) HSP 1 Score: 78.6 bits (192), Expect = 4.610e-15 Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGMSDEGAQACITSALDSCLLTDEEMRVYDQAREVP 252
G E+ +GRWW ++ R+ WP+ +I+ D EG +GDRRQEL+FIG + A+A I +ALD+CL TD E+ +AR P
Sbjct: 493 GKQLELSAMGRWWAAVPRSSWPEAHVGSILADCEGEWGDRRQELIFIGANL----AEAEIIAALDACLATDAELGELAKARGAP 572 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137720.2651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig137720.2651.1 >prot_H-elongata_contig137720.2651.1 ID=prot_H-elongata_contig137720.2651.1|Name=mRNA_H-elongata_contig137720.2651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp GASFEVLCLGRWWDSLERAQWPQGQEAAIMDDFEGAYGDRRQELVFIGLGback to top mRNA from alignment at H-elongata_contig137720:77..825+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig137720.2651.1 ID=mRNA_H-elongata_contig137720.2651.1|Name=mRNA_H-elongata_contig137720.2651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=749bp|location=Sequence derived from alignment at H-elongata_contig137720:77..825+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig137720:77..825+ >mRNA_H-elongata_contig137720.2651.1 ID=mRNA_H-elongata_contig137720.2651.1|Name=mRNA_H-elongata_contig137720.2651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig137720:77..825+ (Himanthalia elongata Himel1 dioecious)back to top |