mRNA_H-elongata_contig137592.2645.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137592.2645.1
Unique NamemRNA_H-elongata_contig137592.2645.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: D7G2W6_ECTSI (Putative growth-on protein GRO10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W6_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.500e-25
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1
Query:   13 QVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGCQ 180
            +VATFLL LAF YD+FWVF+SPQLFGESVMVKVATGGEITQDPTFCEKYPT  GCQ
Sbjct:  451 KVATFLLCLAFLYDIFWVFLSPQLFGESVMVKVATGGEITQDPTFCEKYPTSDGCQ 506          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: A0A7S2BZ12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ12_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.330e-17
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   13 QVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGCQA 183
            +VA  LLS+AF YD+F+VFISP  F ESVMVKVATG + T DP +CEKYPT+S CQ+
Sbjct:   56 KVAALLLSMAFLYDIFFVFISPYFFSESVMVKVATGNQPTADPDYCEKYPTDSDCQS 112          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: A0A7S2H102_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H102_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.280e-16
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   13 QVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGC 177
            +VAT LL +AFFYD+F+VFISP  F ESVMVKVATG + T+DP +CEKYPT+S C
Sbjct:  435 RVATLLLCMAFFYDIFFVFISPIFFTESVMVKVATGSQPTKDPDYCEKYPTDSEC 489          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: A0A836CBZ5_9STRA (Putative growth-on protein GRO10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.060e-16
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   13 QVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGC 177
            +VA  LLSLAF YD+FWVF+SP LF ESVMV VATGG+ T DP  CEKYP   GC
Sbjct:  433 RVAAVLLSLAFVYDIFWVFLSPFLFSESVMVAVATGGDSTVDPLTCEKYPDTHGC 487          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: W7TAM5_9STRA (Signal peptide peptidase-aspartyl protease family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAM5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.890e-15
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   13 QVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGCQAR 186
            +VAT LLSLAF YD+F+VF+SP  F ESVM+KVATGG    D TFCEKYP +  C+ R
Sbjct:  473 KVATILLSLAFLYDIFFVFLSPIFFQESVMIKVATGGAPRADETFCEKYPEDEKCRVR 530          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: A0A8J2X1D8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1D8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.370e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   13 QVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGCQAR 186
            +VA+ LL +AF YD+F+VFISP LFGESVMV+VATG   T+D  +CEKYP +  CQ++
Sbjct:  409 RVASLLLCMAFCYDIFFVFISPHLFGESVMVRVATGKAPTKDADYCEKYPDDKDCQSQ 466          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: A0A7S3KYI1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KYI1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.570e-14
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 MNLPQVATFLLSLAFFYDVFWVFISPQLFGESVMVKVAT-GGEITQDPTFCEKYPTESGCQ 180
            +N  +VA+ LL +AFFYD+F+VF+SP +F +SVM+ VAT GG  T DP +CEKYP +SGCQ
Sbjct:  484 LNSLKVASALLIVAFFYDIFFVFLSPLIFSKSVMIDVATSGGPPTADPLWCEKYPNDSGCQ 544          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: F0YJD8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJD8_AURAN)

HSP 1 Score: 72.0 bits (175), Expect = 7.410e-14
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 MNLPQVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGCQA 183
            +N  +VA  LLS+AF YD+F+VF+SP  F ES+MVKVATG   ++D  +CEKYP +  CQ+
Sbjct:   51 LNSLRVAAMLLSMAFCYDIFFVFLSPYFFEESIMVKVATGKGPSKDADYCEKYPADDDCQS 111          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: A0A7S2R3L5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3L5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.660e-13
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   13 QVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFCEKYPTESGCQA 183
            +VA  LLSLAF YD+F+VFISP +F +SVMVKVA+G   T D  FCEKYP+++ CQ+
Sbjct:  377 RVAAQLLSLAFAYDIFFVFISPAIFKQSVMVKVASGSGPTADEDFCEKYPSDADCQS 433          
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Match: A0A7S0GKA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKA6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.060e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   28 LLSLAFFYDVFWVFISPQLFGESVMVKVAT-GGEITQDPTFCEKYPTESGC 177
            LL++AFFYD+F+VFI+P  FG SVMV VAT GG  T DP +CEKYP   GC
Sbjct:    2 LLTVAFFYDIFFVFITPYFFGSSVMVAVATSGGPPTGDPMWCEKYPKSDGC 52          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137592.2645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2W6_ECTSI1.500e-2587.50Putative growth-on protein GRO10 n=2 Tax=Ectocarpu... [more]
A0A7S2BZ12_9STRA1.330e-1766.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2H102_9STRA1.280e-1669.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CBZ5_9STRA6.060e-1669.09Putative growth-on protein GRO10 n=1 Tax=Tribonema... [more]
W7TAM5_9STRA2.890e-1563.79Signal peptide peptidase-aspartyl protease family ... [more]
A0A8J2X1D8_9STRA1.370e-1460.34Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3KYI1_9STRA2.570e-1459.02Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
F0YJD8_AURAN7.410e-1454.10Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2R3L5_9STRA1.660e-1361.40Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0GKA6_9STRA3.060e-1364.71Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137592contigH-elongata_contig137592:1138..1323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5.2e-21
Seed eggNOG ortholog2880.D7G2W6
KEGG koko:K09596,ko:K09597,ko:K09598
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG2442@2759,KOG2443@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categorysignal peptide
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.7132318-CDS-H-elongata_contig137592:1137..13231622929817.7132318-CDS-H-elongata_contig137592:1137..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137592 1138..1323 -
1691679169.2282357-CDS-H-elongata_contig137592:1137..13231691679169.2282357-CDS-H-elongata_contig137592:1137..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137592 1138..1323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137592.2645.1prot_H-elongata_contig137592.2645.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137592 1138..1323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137592.2645.1

>prot_H-elongata_contig137592.2645.1 ID=prot_H-elongata_contig137592.2645.1|Name=mRNA_H-elongata_contig137592.2645.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MNLPQVATFLLSLAFFYDVFWVFISPQLFGESVMVKVATGGEITQDPTFC
EKYPTESGCQAR
back to top

mRNA from alignment at H-elongata_contig137592:1138..1323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137592.2645.1 ID=mRNA_H-elongata_contig137592.2645.1|Name=mRNA_H-elongata_contig137592.2645.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig137592:1138..1323- (Himanthalia elongata Himel1 dioecious)
ATGAACCTGCCGCAGGTGGCGACCTTCCTCCTAAGCCTGGCCTTCTTCTA CGACGTGTTCTGGGTGTTCATATCCCCGCAGCTGTTCGGGGAAAGCGTGA TGGTCAAGGTCGCCACGGGAGGAGAGATCACCCAGGACCCGACTTTCTGC GAAAAATATCCTACCGAGTCGGGATGCCAGGCACGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig137592:1138..1323-

>mRNA_H-elongata_contig137592.2645.1 ID=mRNA_H-elongata_contig137592.2645.1|Name=mRNA_H-elongata_contig137592.2645.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig137592:1138..1323- (Himanthalia elongata Himel1 dioecious)
ATGAACCTGCCGCAGGTGGCGACCTTCCTCCTAAGCCTGGCCTTCTTCTA
CGACGTGTTCTGGGTGTTCATATCCCCGCAGCTGTTCGGGGAAAGCGTGA
TGGTCAAGGTCGCCACGGGAGGAGAGATCACCCAGGACCCGACTTTCTGC
GAAAAATATCCTACCGAGTCGGGATGCCAGGCACGTATGAACCTGCCGCA
GGTGGCGACCTTCCTCCTAAGCCTGGCCTTCTTCTACGACGTGTTCTGGG
TGTTCATATCCCCGCAGCTGTTCGGGGAAAGCGTGATGGTCAAGGTCGCC
ACGGGAGGAGAGATCACCCAGGACCCGACTTTCTGCGAAAAATATCCTAC
CGAGTCGGGATGCCAGGCACGT
back to top