mRNA_H-elongata_contig13759.2644.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig13759.2644.1
Unique Name	mRNA_H-elongata_contig13759.2644.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig13759.2644.1 vs. uniprot

BLAST of mRNA_H-elongata_contig13759.2644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig13759	contig	H-elongata_contig13759:842..2532 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	1678
Cds size	1077
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig13759.2644.1	prot_H-elongata_contig13759.2644.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig13759 1355..2431 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929817.6433296-UTR-H-elongata_contig13759:841..1338	1622929817.6433296-UTR-H-elongata_contig13759:841..1338	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13759 842..1338 +
1691679169.192602-UTR-H-elongata_contig13759:841..1338	1691679169.192602-UTR-H-elongata_contig13759:841..1338	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13759 842..1338 +
1622929817.6538181-UTR-H-elongata_contig13759:1351..1354	1622929817.6538181-UTR-H-elongata_contig13759:1351..1354	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13759 1352..1354 +
1691679169.202233-UTR-H-elongata_contig13759:1351..1354	1691679169.202233-UTR-H-elongata_contig13759:1351..1354	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13759 1352..1354 +
1622929817.6786296-UTR-H-elongata_contig13759:2431..2532	1622929817.6786296-UTR-H-elongata_contig13759:2431..2532	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13759 2432..2532 +
1691679169.2197533-UTR-H-elongata_contig13759:2431..2532	1691679169.2197533-UTR-H-elongata_contig13759:2431..2532	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig13759 2432..2532 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929817.6643288-CDS-H-elongata_contig13759:1354..2431	1622929817.6643288-CDS-H-elongata_contig13759:1354..2431	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13759 1355..2431 +
1691679169.212313-CDS-H-elongata_contig13759:1354..2431	1691679169.212313-CDS-H-elongata_contig13759:1354..2431	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig13759 1355..2431 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig13759:842..2532+
coding sequence from alignment at H-elongata_contig13759:842..2532+

protein sequence of mRNA_H-elongata_contig13759.2644.1

>prot_H-elongata_contig13759.2644.1 ID=prot_H-elongata_contig13759.2644.1|Name=mRNA_H-elongata_contig13759.2644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
MVNLSKKRCAGEGCFKTSSYGKAGTTNREYCAEHALEGMFNLSNTRCAGD
GCYKLASYGKAGNTKREYCTEHALKGMVNRSKKRCAGDGCIKTSYYGRAG
TTNREYCAGHALEGMVNLSKTRCAADGCYKLASYGKAGSKKRKYCTEHAL
VGMVNVLNKRCASDGCFKTSSYVKAGTTKREYCAEHALEGMVNLSNNMCG
GDRCSKLGSYGNAMSTKLEFCAKHALEEMCIDEGCSKLPTYGKAGSKKRE
YSTEHVFEETVNVSKKMYSGDRCSNISPCEGPGSVKRDYCAKHALEGMVC
IVPHVIPSSRKRVSKISSSPVSVSKICITDSKVRVPFAKTASSGAVLVKS
EISVTKSK*

mRNA from alignment at H-elongata_contig13759:842..2532+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig13759.2644.1 ID=mRNA_H-elongata_contig13759.2644.1|Name=mRNA_H-elongata_contig13759.2644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1691bp|location=Sequence derived from alignment at H-elongata_contig13759:842..2532+ (Himanthalia elongata Himel1 dioecious)
GACGGGGTGACCGACCGCACGAACCGAGATTACTGCGCCAAGCATGCGCT
AAATGATGTGGCAAATGTGAAGAGGAATATGTGTACCAGCGATAGCTGCT
CTAAGGTACCAAGCTACGGAAAGGCTGGCAGCACAAAACGGGAGTACTGC
ACTGAGCATGCCTTGGAGGGAATGGTCAATGTTTCGAAGAAAAAATGTAC
CGGTGAAGGATGTTTTAAGACTTCGAGCTACGGAAAGGCCGGAAGCACGA
AGAGAGAGTACTGCGCTGAGCACGCATTGGAGGGAATGGTCAATCTTTCG
AACAAAAGGTGTGCTGGTGATGGATGTTCTAAGCGAGCGAGCTACGGAAA
GGCCGGAAGCACGAAACGAGAGTACTGTACTGAGCATGCCTTGGAGGGAA
TGGTAAGTATTTCGAACAAAATGTGTGCTGGTGATGGATGTTCTAAGCGA
GCGAGCTACGGGAAGGCCGGAAGCACGAAGCGAGAGTACTGCACTGAGCA
TGCCTTGGAGGGAATGGTCAACCTTTCGAAAAAAAGGTGTGCCGGTGAGG
GTTGTTTTAAGACTTCGAGCTACGGAAAGGCCGGAACCACAAATCGAGAG
TACTGCGCTGAGCATGCCTTGGAGGGGATGTTCAATCTTTCCAACACAAG
GTGTGCTGGGGATGGATGTTATAAGCTAGCGAGCTACGGGAAGGCCGGAA
ACACGAAGCGAGAGTACTGCACTGAGCATGCCTTGAAGGGAATGGTCAAT
CGTTCGAAAAAAAGGTGTGCCGGTGATGGGTGTATTAAGACTTCGTACTA
CGGAAGGGCCGGAACCACGAATCGAGAGTATTGCGCTGGGCATGCCTTAG
AGGGAATGGTCAATCTTTCGAAGACAAGGTGTGCTGCTGATGGATGTTAT
AAGCTAGCGAGCTACGGGAAGGCCGGAAGCAAGAAACGAAAGTACTGTAC
TGAGCATGCCTTGGTGGGAATGGTCAATGTTTTGAACAAAAGGTGTGCCA
GTGATGGGTGTTTTAAGACTTCGAGCTACGTAAAAGCCGGAACGACGAAG
AGAGAGTACTGCGCTGAGCATGCCTTGGAGGGAATGGTCAATCTTTCGAA
TAACATGTGTGGTGGTGATCGATGTTCTAAACTAGGGAGCTACGGGAATG
CCATGAGCACGAAGCTAGAGTTCTGCGCTAAGCATGCCTTGGAGGAAATG
TGTATCGACGAGGGTTGCTCTAAGTTACCAACCTACGGTAAGGCTGGAAG
CAAGAAACGGGAGTATTCCACCGAGCATGTATTCGAGGAGACGGTTAATG
TTTCGAAGAAAATGTATTCAGGGGATAGATGCTCTAACATATCTCCCTGC
GAAGGGCCCGGCAGCGTGAAGCGGGATTACTGCGCAAAACATGCTTTGGA
AGGAATGGTGTGTATTGTCCCACACGTCATTCCAAGTTCCAGGAAGCGGG
TGTCGAAGATATCTTCATCGCCAGTATCCGTTTCGAAGATATGTATAACC
GATAGTAAGGTTAGAGTCCCCTTTGCCAAGACTGCATCATCAGGTGCTGT
TTTGGTGAAGTCAGAGATATCAGTAACTAAATCCAAGTAGGTAATATTTT
AGAGGAGTCTCTTGGGCGAACCGGAGCGATGACATTGCGCTCCTTGGATT
ACATGTCTAAAATATTATTTCTTGAGCATGTTCAGTTGACC

Coding sequence (CDS) from alignment at H-elongata_contig13759:842..2532+

>mRNA_H-elongata_contig13759.2644.1 ID=mRNA_H-elongata_contig13759.2644.1|Name=mRNA_H-elongata_contig13759.2644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at H-elongata_contig13759:842..2532+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAACCTTTCGAAAAAAAGGTGTGCCGGTGAGGGTTGTTTTAAGAC
TTCGAGCTACGGAAAGGCCGGAACCACAAATCGAGAGTACTGCGCTGAGC
ATGCCTTGGAGGGGATGTTCAATCTTTCCAACACAAGGTGTGCTGGGGAT
GGATGTTATAAGCTAGCGAGCTACGGGAAGGCCGGAAACACGAAGCGAGA
GTACTGCACTGAGCATGCCTTGAAGGGAATGGTCAATCGTTCGAAAAAAA
GGTGTGCCGGTGATGGGTGTATTAAGACTTCGTACTACGGAAGGGCCGGA
ACCACGAATCGAGAGTATTGCGCTGGGCATGCCTTAGAGGGAATGGTCAA
TCTTTCGAAGACAAGGTGTGCTGCTGATGGATGTTATAAGCTAGCGAGCT
ACGGGAAGGCCGGAAGCAAGAAACGAAAGTACTGTACTGAGCATGCCTTG
GTGGGAATGGTCAATGTTTTGAACAAAAGGTGTGCCAGTGATGGGTGTTT
TAAGACTTCGAGCTACGTAAAAGCCGGAACGACGAAGAGAGAGTACTGCG
CTGAGCATGCCTTGGAGGGAATGGTCAATCTTTCGAATAACATGTGTGGT
GGTGATCGATGTTCTAAACTAGGGAGCTACGGGAATGCCATGAGCACGAA
GCTAGAGTTCTGCGCTAAGCATGCCTTGGAGGAAATGTGTATCGACGAGG
GTTGCTCTAAGTTACCAACCTACGGTAAGGCTGGAAGCAAGAAACGGGAG
TATTCCACCGAGCATGTATTCGAGGAGACGGTTAATGTTTCGAAGAAAAT
GTATTCAGGGGATAGATGCTCTAACATATCTCCCTGCGAAGGGCCCGGCA
GCGTGAAGCGGGATTACTGCGCAAAACATGCTTTGGAAGGAATGGTGTGT
ATTGTCCCACACGTCATTCCAAGTTCCAGGAAGCGGGTGTCGAAGATATC
TTCATCGCCAGTATCCGTTTCGAAGATATGTATAACCGATAGTAAGGTTA
GAGTCCCCTTTGCCAAGACTGCATCATCAGGTGCTGTTTTGGTGAAGTCA
GAGATATCAGTAACTAAATCCAAGTAGATGGTCAACCTTTCGAAAAAAAG
GTGTGCCGGTGAGGGTTGTTTTAAGACTTCGAGCTACGGAAAGGCCGGAA
CCACAAATCGAGAGTACTGCGCTGAGCATGCCTTGGAGGGGATGTTCAAT
CTTTCCAACACAAGGTGTGCTGGGGATGGATGTTATAAGCTAGCGAGCTA
CGGGAAGGCCGGAAACACGAAGCGAGAGTACTGCACTGAGCATGCCTTGA
AGGGAATGGTCAATCGTTCGAAAAAAAGGTGTGCCGGTGATGGGTGTATT
AAGACTTCGTACTACGGAAGGGCCGGAACCACGAATCGAGAGTATTGCGC
TGGGCATGCCTTAGAGGGAATGGTCAATCTTTCGAAGACAAGGTGTGCTG
CTGATGGATGTTATAAGCTAGCGAGCTACGGGAAGGCCGGAAGCAAGAAA
CGAAAGTACTGTACTGAGCATGCCTTGGTGGGAATGGTCAATGTTTTGAA
CAAAAGGTGTGCCAGTGATGGGTGTTTTAAGACTTCGAGCTACGTAAAAG
CCGGAACGACGAAGAGAGAGTACTGCGCTGAGCATGCCTTGGAGGGAATG
GTCAATCTTTCGAATAACATGTGTGGTGGTGATCGATGTTCTAAACTAGG
GAGCTACGGGAATGCCATGAGCACGAAGCTAGAGTTCTGCGCTAAGCATG
CCTTGGAGGAAATGTGTATCGACGAGGGTTGCTCTAAGTTACCAACCTAC
GGTAAGGCTGGAAGCAAGAAACGGGAGTATTCCACCGAGCATGTATTCGA
GGAGACGGTTAATGTTTCGAAGAAAATGTATTCAGGGGATAGATGCTCTA
ACATATCTCCCTGCGAAGGGCCCGGCAGCGTGAAGCGGGATTACTGCGCA
AAACATGCTTTGGAAGGAATGGTGTGTATTGTCCCACACGTCATTCCAAG
TTCCAGGAAGCGGGTGTCGAAGATATCTTCATCGCCAGTATCCGTTTCGA
AGATATGTATAACCGATAGTAAGGTTAGAGTCCCCTTTGCCAAGACTGCA
TCATCAGGTGCTGTTTTGGTGAAGTCAGAGATATCAGTAACTAAATCCAA
GTAG