mRNA_H-elongata_contig137572.2642.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137572.2642.1
Unique NamemRNA_H-elongata_contig137572.2642.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A6H5KN89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN89_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.950e-32
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   10 KPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            KPYVTDNDNYIVDLYF++PI+DA  AGKEMLETVGVVEHGLFLDMSFAVISAG DGITVKTK
Sbjct:   36 KPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVKTK 97
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: D8LDV8_ECTSI (Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV8_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.680e-30
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:   10 KPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            KPYVTDNDNYIVDLYF++PI+DA  AGKEMLETVGVVEHGLFLDMSFAVISAG DGITVKTK
Sbjct:  173 KPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVKTK 234
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A6T5NRP6_HETAK (Ribose-5-phosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NRP6_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 6.990e-24
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTKK 198
            DG+KPYVTDNDNYI+DLYF EPI+D + A +EML  VGVVEHGLFLDM+ AV+ AG DGI VK  K
Sbjct:  207 DGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK 272
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A7S3A473_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A473_9RHOD)

HSP 1 Score: 99.0 bits (245), Expect = 1.000e-23
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            +G+KPYVTDNDNYIVDLYF EPI+DA  A KE+LE VGVVEHGLFLDM+ AVI AG DG+ V  K
Sbjct:  209 EGDKPYVTDNDNYIVDLYFEEPIKDANAAAKEILEMVGVVEHGLFLDMTTAVIVAGKDGVEVIEK 273
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A0A9JF06_ARUDO (Pco087551 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JF06_ARUDO)

HSP 1 Score: 94.7 bits (234), Expect = 1.450e-23
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            DG+KPYVTDN NYIVDLYF  PI+DA  AGKE+    GVVEHGLFLDM+ +VI AG DG+ VKTK
Sbjct:   61 DGDKPYVTDNSNYIVDLYFKTPIKDALAAGKEISALEGVVEHGLFLDMASSVIIAGTDGVGVKTK 125
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A7S0T664_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T664_9RHOD)

HSP 1 Score: 97.8 bits (242), Expect = 3.670e-23
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            DGEKPYVTDNDNYIVDLYF +PI DA  A +EM+  VGVVEHGLFLDM+ AV+ AG +G+ +KTK
Sbjct:  225 DGEKPYVTDNDNYIVDLYFEKPIADANKAAEEMINMVGVVEHGLFLDMTTAVLIAGKNGVEMKTK 289
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: W1NV73_AMBTC (Ribose-5-phosphate isomerase n=3 Tax=Amborella trichopoda TaxID=13333 RepID=W1NV73_AMBTC)

HSP 1 Score: 97.1 bits (240), Expect = 6.750e-23
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            DG+KPYVTDN NYIVDLYF+ PI+D++ AG E+ +  GVVEHGLFLDM+ AVI AG+DG+T+KTK
Sbjct:  221 DGDKPYVTDNSNYIVDLYFNTPIKDSRAAGAEISKLEGVVEHGLFLDMATAVIIAGSDGVTLKTK 285
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A7S1TKQ2_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKQ2_9RHOD)

HSP 1 Score: 96.3 bits (238), Expect = 1.310e-22
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            DG+KPYVTDNDNYI+DLYF +PI+DA  A +EM+  VGVVEHGLFL+M+ AV+ AG +G+ +KTK
Sbjct:  220 DGDKPYVTDNDNYIIDLYFKQPIKDANKAAEEMINMVGVVEHGLFLNMTTAVLIAGKNGVEIKTK 284
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A166BVV5_DAUCS (Ribose-5-phosphate isomerase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166BVV5_DAUCS)

HSP 1 Score: 95.9 bits (237), Expect = 1.630e-22
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            DGEKPYVTDN NYIVDLYF  PI DA  AGKE+    GVVEHGLFLDM+ AVI AG+DG++VK+K
Sbjct:  213 DGEKPYVTDNMNYIVDLYFKTPITDAPAAGKEISSLEGVVEHGLFLDMTTAVIIAGSDGVSVKSK 277
[Close]
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Match: A0A1D1Y3A5_9ARAE (Ribose-5-phosphate isomerase n=2 Tax=Araceae TaxID=4454 RepID=A0A1D1Y3A5_9ARAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.910e-22
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    4 GEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSFAVISAGADGITVKTK 195
            G KPYVTDN NYIVDLYF  PI+DA+ AGKE+    GVVEHGLFLDM+ AVI AG DGI+VKTK
Sbjct:  210 GGKPYVTDNSNYIVDLYFKTPIRDAEAAGKEISTFEGVVEHGLFLDMASAVIIAGKDGISVKTK 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137572.2642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN89_9PHAE3.950e-3290.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDV8_ECTSI1.680e-3090.32Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus si... [more]
A0A6T5NRP6_HETAK6.990e-2471.21Ribose-5-phosphate isomerase n=1 Tax=Heterosigma a... [more]
A0A7S3A473_9RHOD1.000e-2373.85Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A0A9JF06_ARUDO1.450e-2370.77Pco087551 n=1 Tax=Arundo donax TaxID=35708 RepID=A... [more]
A0A7S0T664_9RHOD3.670e-2370.77Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
W1NV73_AMBTC6.750e-2369.23Ribose-5-phosphate isomerase n=3 Tax=Amborella tri... [more]
A0A7S1TKQ2_9RHOD1.310e-2266.15Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A166BVV5_DAUCS1.630e-2272.31Ribose-5-phosphate isomerase n=1 Tax=Daucus carota... [more]
A0A1D1Y3A5_9ARAE5.910e-2273.44Ribose-5-phosphate isomerase n=2 Tax=Araceae TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137572contigH-elongata_contig137572:1..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue9.3e-24
Seed eggNOG ortholog2880.D8LDV8
Preferred nameRPI2
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.ribose-5-phosphate isomerase activity
EggNOG OGsCOG0120@1,KOG3075@2759
EC5.3.1.6
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibose-5-phosphate isomerase
Ec32 orthologEc-08_003540.1
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.4424236-CDS-H-elongata_contig137572:0..961622929817.4424236-CDS-H-elongata_contig137572:0..96Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137572 1..96 +
1691679169.0642462-CDS-H-elongata_contig137572:0..961691679169.0642462-CDS-H-elongata_contig137572:0..96Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137572 1..96 +
1622929817.4589472-CDS-H-elongata_contig137572:662..7671622929817.4589472-CDS-H-elongata_contig137572:662..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137572 663..767 +
1691679169.0757763-CDS-H-elongata_contig137572:662..7671691679169.0757763-CDS-H-elongata_contig137572:662..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137572 663..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137572.2642.1prot_H-elongata_contig137572.2642.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137572 1..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137572.2642.1

>prot_H-elongata_contig137572.2642.1 ID=prot_H-elongata_contig137572.2642.1|Name=mRNA_H-elongata_contig137572.2642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
DGEKPYVTDNDNYIVDLYFSEPIQDAKLAGKEMLETVGVVEHGLFLDMSF
AVISAGADGITVKTKK*
back to top

mRNA from alignment at H-elongata_contig137572:1..767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137572.2642.1 ID=mRNA_H-elongata_contig137572.2642.1|Name=mRNA_H-elongata_contig137572.2642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=767bp|location=Sequence derived from alignment at H-elongata_contig137572:1..767+ (Himanthalia elongata Himel1 dioecious)
GACGGTGAAAAGCCTTACGTCACGGACAACGACAACTATATCGTGGACCT
GTACTTCTCCGAGCCCATCCAGGACGCCAAGCTGGCCGGCAAGGAGGTGT
GTATGTGCATGCATAATAGGAGAAGGACAGAGGGAGAGGAGGGAGAGGTA
GAAAGTTCGTCGTCGCTCACGGCGATGCGCATACTACTACTACTGTACAT
GTACACACGCGTAACGCCATATTCAGCGGCGGTTCGAGGAGTTACTATTG
CCGTTGGCGATAGAGCTACCGCGTCCAAGTATGGTCTCCCGGGGTGTTGT
TGTGGTTGAGTTTCGAACGAGAAGAGGCTCACTACATTCTCCAAAAAGGA
GGCACTTTTATTTTTTAATGTTGTTGGTGGTTCCCGAGCTTAGATGAAAG
AGACGCTTGTAAGGGGTCTCGCGGAGACATGGCGAGCACAGACAGGGAAC
TTCGGCAGATATTGCCCGACTCTTGTGTGTGATCTGATCGACCGACCGCC
TCGTGTCCCGTTATTTCCTCCCGTCTGTTCCAATATCGCGGGATCGTGCG
TGCCTGTCGTGCATCAATAATGAGCCCTCTTCCGTGTGTCTCTGCCAAAC
GAGCGAGCGAAAATAACGAGCAAGCGATCTGTTGCCATGGATTTTTTTTC
TGAATCGGCCAGATGCTGGAGACGGTCGGCGTCGTCGAGCACGGGCTCTT
CCTCGACATGTCGTTCGCGGTGATCTCCGCCGGTGCAGACGGCATCACGG
TCAAGACCAAGAAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig137572:1..767+

>mRNA_H-elongata_contig137572.2642.1 ID=mRNA_H-elongata_contig137572.2642.1|Name=mRNA_H-elongata_contig137572.2642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig137572:1..767+ (Himanthalia elongata Himel1 dioecious)
GACGGTGAAAAGCCTTACGTCACGGACAACGACAACTATATCGTGGACCT
GTACTTCTCCGAGCCCATCCAGGACGCCAAGCTGGCCGGCAAGGAGGACG
GTGAAAAGCCTTACGTCACGGACAACGACAACTATATCGTGGACCTGTAC
TTCTCCGAGCCCATCCAGGACGCCAAGCTGGCCGGCAAGGAGATGCTGGA
GACGGTCGGCGTCGTCGAGCACGGGCTCTTCCTCGACATGTCGTTCGCGG
TGATCTCCGCCGGTGCAGACGGCATCACGGTCAAGACCAAGAAGTAAATG
CTGGAGACGGTCGGCGTCGTCGAGCACGGGCTCTTCCTCGACATGTCGTT
CGCGGTGATCTCCGCCGGTGCAGACGGCATCACGGTCAAGACCAAGAAGT
AA
back to top