mRNA_H-elongata_contig137435.2639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137435.2639.1
Unique NamemRNA_H-elongata_contig137435.2639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A6H5JR30_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR30_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 9.690e-58
Identity = 95/126 (75.40%), Postives = 108/126 (85.71%), Query Frame = 1
Query:   13 IPAVAEAARELSREVEGLLKGVFVRRRVDRGEALAQRLRALKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
            +P VAEAA ELSRE E LLKGVFV RR+DR EAL +RLR+LK SSATL+VVPPPMLPHWRNQLTLHA+ GRLG +FFD+RSD  LP  ++L+ FGVVVTTYQRLTNEQP W+ SPL+ IYWLRMVL
Sbjct:  317 MPKVAEAAEELSREAEDLLKGVFVARRIDRAEALVERLRSLKASSATLIVVPPPMLPHWRNQLTLHAEHGRLGPVFFDERSDTRLPPVDELKEFGVVVTTYQRLTNEQPGWSDSPLSRIYWLRMVL 442          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 2.260e-54
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = 1
Query:   13 IPAVAEAARELSREVEGLLKGVFVRRRVDRGEALAQRLRALKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
            +P VAEAA ELSRE E LLKGVFV RR+DR E+L +RL ALK SSATL+VVPPPMLPHWRNQLTLHA+ GRLG++FFD+RSD  LP  ++L+ FGVVVTTYQRLTNEQP W+ SPL+ I+WLRMVL
Sbjct:  278 MPKVAEAAEELSREAEDLLKGVFVARRIDRAESLLERLCALKASSATLIVVPPPMLPHWRNQLTLHAEHGRLGSVFFDERSDTRLPPVDELKDFGVVVTTYQRLTNEQPGWSDSPLSRIHWLRMVL 403          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.320e-10
Identity = 47/152 (30.92%), Postives = 60/152 (39.47%), Query Frame = 1
Query:  115 AQRLRALKPSSATLVVVPPPMLP------------------------------------------------------------HWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
            A RL AL PS ATL+VVPPPM+P                                                            HW  Q+T ++ P  LG  FFD    QPLPSA+ +  F +VVTT  RL+ E+     SPL   ++ RMV+
Sbjct:  527 AARLAALTPSPATLIVVPPPMVPXXXXXXXXXXXXXXXXXXMRAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVLEHWITQITTYSIPTYLGAAFFDKHIRQPLPSAQQMANFNIVVTTTSRLSAERENGDASPLFATHFQRMVI 678          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A2D4BLP9_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLP9_PYTIN)

HSP 1 Score: 65.9 bits (159), Expect = 6.330e-10
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE 333
            S+ TL+VVP P++ HWR Q+ +H Q G L     D    +P+PSAE+L  + VV+T++ RL NE
Sbjct: 1755 SATTLIVVPNPLVEHWRYQIKMHVQRGMLTVYVDDAEGKRPMPSAEELASYDVVITSFSRLANE 1818          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: UPI001263E053 (F-box protein At3g54460 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263E053)

HSP 1 Score: 64.3 bits (155), Expect = 2.140e-9
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLR-GFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
            S ATLVVVPP ++ HW+ Q+  H +PG+L    + D      PSA  L   + +V+TT+ RL+ E      SP+ +++WLR++L
Sbjct:  734 SRATLVVVPPYLVDHWKTQIQKHVRPGQLRLFVWTDHKK---PSAHSLAWDYDIVITTFNRLSAEWGPRKKSPMMQVHWLRVML 814          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A167YFK3_9EURO (SNF2 family helicase n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A167YFK3_9EURO)

HSP 1 Score: 60.8 bits (146), Expect = 3.450e-8
Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE----------QPKWAT----------SPLAEIYWLRMVL 390
            SSATLV+VPP ++ HWR ++  H   G L  L  ++  D  LP A++L  + +V+ +  R +NE          + +W+T          SPL +IYWLR+++
Sbjct:  369 SSATLVIVPPNLVTHWRQEIAKHVNEGALKILVVNN--DAKLPPAKELATYDIVLFSKARFSNEITALNNLSLVRRRWSTIRPDEGAEQFSPLRQIYWLRVIV 469          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A8K1CDB0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDB0_PYTOL)

HSP 1 Score: 58.9 bits (141), Expect = 1.630e-7
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  133 LKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE 333
            L+ S+ATL+VVP P++ HWR Q+ +H  P  L     D    + LPS +DL  + VV+T+  RL +E
Sbjct:  409 LETSAATLIVVPNPLIDHWRYQIEMHLTPNALDVFIDDADGKKDLPSPQDLAKYDVVITSIGRLASE 475          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A662XAN3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAN3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.040e-7
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query:  121 RLRALKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE 333
            RL  L  S A+L+VVP P++ HW+ Q+  H +PG L  +F D   D  LP   DL  + VV+T++ RL  E
Sbjct:  384 RLEDLVSSGASLIVVPDPLVEHWKYQVETHVEPGAL-RVFVDPGMDYTLPCNLDLAEYDVVITSFSRLARE 453          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A0M0LQQ8_9EUKA (F-box protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQQ8_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 5.390e-7
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLG-TLFFDDRSD---QPLPSAEDLRGFGVVVTTYQRLTNE-----QPKWATSPLAEIYWLRMV 387
            S ATL+VVP P++PHWR QL  H   G LG  +  DD      + L SA +L    VVVT+ +RL+ E     +     S L E+ W+R++
Sbjct:  303 SCATLLVVPRPLVPHWREQLEWHVHTGALGGPVIVDDHGPAELRDLYSASELAAAAVVVTSSERLSQEHRHAHRGDGRPSVLCEVAWVRLI 393          
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A0A1TC31_9HYPO (Uncharacterized protein n=2 Tax=Torrubiella hemipterigena TaxID=1531966 RepID=A0A0A1TC31_9HYPO)

HSP 1 Score: 57.4 bits (137), Expect = 5.560e-7
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1
Query:  142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWAT-------SPLAEIYWLRMVL 390
            +SATL++VPPP++P W  QL  H  PG L   F        L    ++R F +V+TTY  ++ E   W         SPL  + W R++L
Sbjct:  308 TSATLIIVPPPLIPSWEEQLLEHVVPGELS--FHRHHGKTRLNDISEIRQFNIVLTTYHTVSAE---WKAANGGLEKSPLFSVRWRRIIL 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR30_9PHAE9.690e-5875.40Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FP67_ECTSI2.260e-5473.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z414_9STRA6.320e-1030.92SNF2 family N-terminal domain-containing protein n... [more]
A0A2D4BLP9_PYTIN6.330e-1045.31Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
UPI001263E0532.140e-939.29F-box protein At3g54460 n=1 Tax=Pistacia vera TaxI... [more]
A0A167YFK3_9EURO3.450e-833.98SNF2 family helicase n=1 Tax=Ascosphaera apis ARSE... [more]
A0A8K1CDB0_PYTOL1.630e-741.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XAN3_9STRA3.040e-742.25Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0M0LQQ8_9EUKA5.390e-739.56F-box protein (Fragment) n=1 Tax=Chrysochromulina ... [more]
A0A0A1TC31_9HYPO5.560e-735.56Uncharacterized protein n=2 Tax=Torrubiella hemipt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137435contigH-elongata_contig137435:203..1158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue3.4e-46
Seed eggNOG ortholog2880.D7FP67
KEGG koko:K15505
GOsGO:0005575,GO:0005911,GO:0009506,GO:0030054,GO:0055044
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
Ec32 ortholog descriptionBromodomain, Zn finger and SNF2-related helicase domain protein
Ec32 orthologEc-08_000660.1
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size390
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137435.2639.1prot_H-elongata_contig137435.2639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137435 203..1158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.0328112-CDS-H-elongata_contig137435:202..2981622929817.0328112-CDS-H-elongata_contig137435:202..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137435 203..298 +
1691679168.79582-CDS-H-elongata_contig137435:202..2981691679168.79582-CDS-H-elongata_contig137435:202..298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137435 203..298 +
1622929817.0470476-CDS-H-elongata_contig137435:643..7671622929817.0470476-CDS-H-elongata_contig137435:643..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137435 644..767 +
1691679168.8066437-CDS-H-elongata_contig137435:643..7671691679168.8066437-CDS-H-elongata_contig137435:643..767Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137435 644..767 +
1622929817.060193-CDS-H-elongata_contig137435:988..11581622929817.060193-CDS-H-elongata_contig137435:988..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137435 989..1158 +
1691679168.8149004-CDS-H-elongata_contig137435:988..11581691679168.8149004-CDS-H-elongata_contig137435:988..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137435 989..1158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137435.2639.1

>prot_H-elongata_contig137435.2639.1 ID=prot_H-elongata_contig137435.2639.1|Name=mRNA_H-elongata_contig137435.2639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
KTQRIPAVAEAARELSREVEGLLKGVFVRRRVDRGEALAQRLRALKPSSA
TLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGV
VVTTYQRLTNEQPKWATSPLAEIYWLRMVL
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mRNA from alignment at H-elongata_contig137435:203..1158+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137435.2639.1 ID=mRNA_H-elongata_contig137435.2639.1|Name=mRNA_H-elongata_contig137435.2639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig137435:203..1158+ (Himanthalia elongata Himel1 dioecious)
AAGACTCAAAGGATACCGGCCGTAGCGGAGGCTGCGCGGGAGCTCTCTCG AGAGGTTGAGGGTCTTCTAAAGGGCGTGTTCGTGCGCAGAAGAGTGGTGA GACATCAAGATTGAAAGCGCAGACTTGAAACTTCAACTTTAATTTCGATT TAAATCTCCGAATTGAACATTCTGCACTCCAGTCGGATTTCGTTATTCCT GTTCAAGGTTATTAAAAAAAAATGTCCGGCAATCATGCCCCAACCCGACC CATAGCCTCACGATTCAATTATCACACGCTATAAGTTACAATCTTGTTCC GATCAATCGTTTTCGCTCCCCACTTGCGCCCACGACCGACGTCTGGACTT TTTGTGTTGGCCTATTTTCTCCTGACTGACTTGGATGCGGTTGTCGGAAA CCCACGTCTCGTCCGATGGTGGTCGTGGTGGTGTGGCGAAGGATCGAGGC GAAGCCCTGGCGCAACGCCTCCGAGCGCTGAAACCCTCCTCGGCGACGCT TGTGGTCGTTCCGCCGCCCATGCTGCCGCACTGGCGGAACCAGCTCACCT TGCACGCGCAACCAGGTGATTCTCTCCCCCTCCCCGATACCGCCTCCTTA TTATTTACTATACTATGCTATACTATACTATACTGTTCAGCTGACCTCGA GCAAAACTGAGGCCAGCAACAATTAATAGCACCATGAGAGATGTAGCTAT ACTGTATATACTATAGTATACTGTGTTACGACCTCAGCAATCCCACCGCC TTGTGTTACATGCTGTATCCATTATGGACGATGTAGGGAGATTGGGCACC CTTTTTTTTGACGATCGGTCTGATCAGCCTCTTCCGTCTGCGGAAGACCT GCGGGGGTTTGGAGTGGTGGTGACGACATACCAACGGCTCACCAACGAGC AGCCGAAATGGGCGACGTCTCCACTGGCAGAGATCTACTGGCTTAGGATG GTTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig137435:203..1158+

>mRNA_H-elongata_contig137435.2639.1 ID=mRNA_H-elongata_contig137435.2639.1|Name=mRNA_H-elongata_contig137435.2639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig137435:203..1158+ (Himanthalia elongata Himel1 dioecious)
AAGACTCAAAGGATACCGGCCGTAGCGGAGGCTGCGCGGGAGCTCTCTCG
AGAGGTTGAGGGTCTTCTAAAGGGCGTGTTCGTGCGCAGAAGAGTGAAGA
CTCAAAGGATACCGGCCGTAGCGGAGGCTGCGCGGGAGCTCTCTCGAGAG
GTTGAGGGTCTTCTAAAGGGCGTGTTCGTGCGCAGAAGAGTGGATCGAGG
CGAAGCCCTGGCGCAACGCCTCCGAGCGCTGAAACCCTCCTCGGCGACGC
TTGTGGTCGTTCCGCCGCCCATGCTGCCGCACTGGCGGAACCAGCTCACC
TTGCACGCGCAACCAGGATCGAGGCGAAGCCCTGGCGCAACGCCTCCGAG
CGCTGAAACCCTCCTCGGCGACGCTTGTGGTCGTTCCGCCGCCCATGCTG
CCGCACTGGCGGAACCAGCTCACCTTGCACGCGCAACCAGGGAGATTGGG
CACCCTTTTTTTTGACGATCGGTCTGATCAGCCTCTTCCGTCTGCGGAAG
ACCTGCGGGGGTTTGGAGTGGTGGTGACGACATACCAACGGCTCACCAAC
GAGCAGCCGAAATGGGCGACGTCTCCACTGGCAGAGATCTACTGGCTTAG
GATGGTTTTGGGAGATTGGGCACCCTTTTTTTTGACGATCGGTCTGATCA
GCCTCTTCCGTCTGCGGAAGACCTGCGGGGGTTTGGAGTGGTGGTGACGA
CATACCAACGGCTCACCAACGAGCAGCCGAAATGGGCGACGTCTCCACTG
GCAGAGATCTACTGGCTTAGGATGGTTTTG
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