mRNA_H-elongata_contig137435.2639.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A6H5JR30_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR30_9PHAE) HSP 1 Score: 194 bits (492), Expect = 9.690e-58 Identity = 95/126 (75.40%), Postives = 108/126 (85.71%), Query Frame = 1
Query: 13 IPAVAEAARELSREVEGLLKGVFVRRRVDRGEALAQRLRALKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
+P VAEAA ELSRE E LLKGVFV RR+DR EAL +RLR+LK SSATL+VVPPPMLPHWRNQLTLHA+ GRLG +FFD+RSD LP ++L+ FGVVVTTYQRLTNEQP W+ SPL+ IYWLRMVL
Sbjct: 317 MPKVAEAAEELSREAEDLLKGVFVARRIDRAEALVERLRSLKASSATLIVVPPPMLPHWRNQLTLHAEHGRLGPVFFDERSDTRLPPVDELKEFGVVVTTYQRLTNEQPGWSDSPLSRIYWLRMVL 442
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI) HSP 1 Score: 189 bits (481), Expect = 2.260e-54 Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = 1
Query: 13 IPAVAEAARELSREVEGLLKGVFVRRRVDRGEALAQRLRALKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
+P VAEAA ELSRE E LLKGVFV RR+DR E+L +RL ALK SSATL+VVPPPMLPHWRNQLTLHA+ GRLG++FFD+RSD LP ++L+ FGVVVTTYQRLTNEQP W+ SPL+ I+WLRMVL
Sbjct: 278 MPKVAEAAEELSREAEDLLKGVFVARRIDRAESLLERLCALKASSATLIVVPPPMLPHWRNQLTLHAEHGRLGSVFFDERSDTRLPPVDELKDFGVVVTTYQRLTNEQPGWSDSPLSRIHWLRMVL 403
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 6.320e-10 Identity = 47/152 (30.92%), Postives = 60/152 (39.47%), Query Frame = 1
Query: 115 AQRLRALKPSSATLVVVPPPMLP------------------------------------------------------------HWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
A RL AL PS ATL+VVPPPM+P HW Q+T ++ P LG FFD QPLPSA+ + F +VVTT RL+ E+ SPL ++ RMV+
Sbjct: 527 AARLAALTPSPATLIVVPPPMVPXXXXXXXXXXXXXXXXXXMRAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVLEHWITQITTYSIPTYLGAAFFDKHIRQPLPSAQQMANFNIVVTTTSRLSAERENGDASPLFATHFQRMVI 678
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A2D4BLP9_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLP9_PYTIN) HSP 1 Score: 65.9 bits (159), Expect = 6.330e-10 Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE 333
S+ TL+VVP P++ HWR Q+ +H Q G L D +P+PSAE+L + VV+T++ RL NE
Sbjct: 1755 SATTLIVVPNPLVEHWRYQIKMHVQRGMLTVYVDDAEGKRPMPSAEELASYDVVITSFSRLANE 1818
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: UPI001263E053 (F-box protein At3g54460 n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263E053) HSP 1 Score: 64.3 bits (155), Expect = 2.140e-9 Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLR-GFGVVVTTYQRLTNEQPKWATSPLAEIYWLRMVL 390
S ATLVVVPP ++ HW+ Q+ H +PG+L + D PSA L + +V+TT+ RL+ E SP+ +++WLR++L
Sbjct: 734 SRATLVVVPPYLVDHWKTQIQKHVRPGQLRLFVWTDHKK---PSAHSLAWDYDIVITTFNRLSAEWGPRKKSPMMQVHWLRVML 814
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A167YFK3_9EURO (SNF2 family helicase n=1 Tax=Ascosphaera apis ARSEF 7405 TaxID=392613 RepID=A0A167YFK3_9EURO) HSP 1 Score: 60.8 bits (146), Expect = 3.450e-8 Identity = 35/103 (33.98%), Postives = 56/103 (54.37%), Query Frame = 1
Query: 142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE----------QPKWAT----------SPLAEIYWLRMVL 390
SSATLV+VPP ++ HWR ++ H G L L ++ D LP A++L + +V+ + R +NE + +W+T SPL +IYWLR+++
Sbjct: 369 SSATLVIVPPNLVTHWRQEIAKHVNEGALKILVVNN--DAKLPPAKELATYDIVLFSKARFSNEITALNNLSLVRRRWSTIRPDEGAEQFSPLRQIYWLRVIV 469
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A8K1CDB0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDB0_PYTOL) HSP 1 Score: 58.9 bits (141), Expect = 1.630e-7 Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 133 LKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE 333
L+ S+ATL+VVP P++ HWR Q+ +H P L D + LPS +DL + VV+T+ RL +E
Sbjct: 409 LETSAATLIVVPNPLIDHWRYQIEMHLTPNALDVFIDDADGKKDLPSPQDLAKYDVVITSIGRLASE 475
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A662XAN3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAN3_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 3.040e-7 Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 121 RLRALKPSSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNE 333
RL L S A+L+VVP P++ HW+ Q+ H +PG L +F D D LP DL + VV+T++ RL E
Sbjct: 384 RLEDLVSSGASLIVVPDPLVEHWKYQVETHVEPGAL-RVFVDPGMDYTLPCNLDLAEYDVVITSFSRLARE 453
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A0M0LQQ8_9EUKA (F-box protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQQ8_9EUKA) HSP 1 Score: 57.4 bits (137), Expect = 5.390e-7 Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1
Query: 142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLG-TLFFDDRSD---QPLPSAEDLRGFGVVVTTYQRLTNE-----QPKWATSPLAEIYWLRMV 387
S ATL+VVP P++PHWR QL H G LG + DD + L SA +L VVVT+ +RL+ E + S L E+ W+R++
Sbjct: 303 SCATLLVVPRPLVPHWREQLEWHVHTGALGGPVIVDDHGPAELRDLYSASELAAAAVVVTSSERLSQEHRHAHRGDGRPSVLCEVAWVRLI 393
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Match: A0A0A1TC31_9HYPO (Uncharacterized protein n=2 Tax=Torrubiella hemipterigena TaxID=1531966 RepID=A0A0A1TC31_9HYPO) HSP 1 Score: 57.4 bits (137), Expect = 5.560e-7 Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1
Query: 142 SSATLVVVPPPMLPHWRNQLTLHAQPGRLGTLFFDDRSDQPLPSAEDLRGFGVVVTTYQRLTNEQPKWAT-------SPLAEIYWLRMVL 390
+SATL++VPPP++P W QL H PG L F L ++R F +V+TTY ++ E W SPL + W R++L
Sbjct: 308 TSATLIIVPPPLIPSWEEQLLEHVVPGELS--FHRHHGKTRLNDISEIRQFNIVLTTYHTVSAE---WKAANGGLEKSPLFSVRWRRIIL 392 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137435.2639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig137435.2639.1 >prot_H-elongata_contig137435.2639.1 ID=prot_H-elongata_contig137435.2639.1|Name=mRNA_H-elongata_contig137435.2639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp KTQRIPAVAEAARELSREVEGLLKGVFVRRRVDRGEALAQRLRALKPSSAback to top mRNA from alignment at H-elongata_contig137435:203..1158+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig137435.2639.1 ID=mRNA_H-elongata_contig137435.2639.1|Name=mRNA_H-elongata_contig137435.2639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig137435:203..1158+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig137435:203..1158+ >mRNA_H-elongata_contig137435.2639.1 ID=mRNA_H-elongata_contig137435.2639.1|Name=mRNA_H-elongata_contig137435.2639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig137435:203..1158+ (Himanthalia elongata Himel1 dioecious)back to top |