mRNA_H-elongata_contig137426.2636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137426.2636.1
Unique NamemRNA_H-elongata_contig137426.2636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: A0A6H5L5K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 6.680e-51
Identity = 82/108 (75.93%), Postives = 98/108 (90.74%), Query Frame = 1
Query:    1 KVKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQVS 324
            +VKLAGTAGVRVEELTP RSVV+VAN+R+VQNHIG VHACGMALAAESATGI++GM+VPDS +PLCKSMAIDFTR+++G VTAVA L+ EQL  ++ Q KGEA+VQV+
Sbjct:   34 QVKLAGTAGVRVEELTPHRSVVKVANVRRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLASLRDQEKGEANVQVT 141          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: D7FSZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ6_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.030e-50
Identity = 82/108 (75.93%), Postives = 98/108 (90.74%), Query Frame = 1
Query:    1 KVKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQVS 324
            +VKLAGTAGVRVEELTP RSVV+VAN+R+VQNHIG VHACGMALAAESATGI++GM+VPDS +PLCKSMAIDFTR+++G VTAVA L+ EQL  ++ Q KGEA+VQV+
Sbjct:   47 QVKLAGTAGVRVEELTPHRSVVKVANVRRVQNHIGSVHACGMALAAESATGILVGMSVPDSRLPLCKSMAIDFTRLSQGDVTAVAELSEEQLTAVRDQEKGEANVQVT 154          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: W7T2Q8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Q8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.010e-38
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    4 VKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQV 321
            VKLAGTA + VEE++ +R+VV + N R+VQNHIGG+HACGMALAAESATGIV+GMNVPDS +PLCKSM ++F R  +G + AVA LT EQL  I  + KG+  V V
Sbjct:   37 VKLAGTARLWVEEMSDKRAVVHLKNRRRVQNHIGGIHACGMALAAESATGIVVGMNVPDSALPLCKSMKVNFVRRCEGDIKAVAHLTEEQLTKINSEEKGDVLVAV 142          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: A0A836CKL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL5_9STRA)

HSP 1 Score: 132 bits (332), Expect = 6.280e-37
Identity = 61/107 (57.01%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    4 VKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQVS 324
            VK AGTAG+ ++E+ P+R+VV + N R+VQNHIGGVHACGMAL +E+ATG+++ +NVPD+H+PLCKS  +DF RIAKG + AVATLT + L  +    KG+ +V V+
Sbjct:   36 VKFAGTAGISIDEIGPQRAVVTLKNRRRVQNHIGGVHACGMALLSETATGVLLAINVPDTHLPLCKSFKLDFKRIAKGDLKAVATLTDDMLLQMTTTDKGDVTVPVT 142          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: K0SX00_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SX00_THAOC)

HSP 1 Score: 130 bits (328), Expect = 1.430e-36
Identity = 62/104 (59.62%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    4 VKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASV 315
            VKLAGTAG+R++EL+ +++ + +AN R+VQNHIGG+HAC MALAAESATGI+IGMNVPD+H+PL K+M +DF R  KG + A ATL+ E    I ++ KGE  V
Sbjct:   36 VKLAGTAGIRIDELSHKKATISLANARRVQNHIGGLHACSMALAAESATGILIGMNVPDTHLPLIKTMKVDFVRRCKGDIRAEATLSDEDYRRIHEEDKGEVWV 139          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: A0A349LV99_9GAMM (DUF4442 domain-containing protein n=1 Tax=Rheinheimera sp. TaxID=1869214 RepID=A0A349LV99_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 4.860e-36
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    4 VKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQV 321
            +K AGTAGVRVE+L PE+SV+ + N R+VQNHIGGVHA  MAL  ESATG ++G++VPD  IPL KSM ID+T+ A G + AVA+LTTEQ+  I +Q KGE  V V
Sbjct:   34 IKFAGTAGVRVEQLDPEQSVLTLKNRRRVQNHIGGVHAAAMALLGESATGFLVGIHVPDDRIPLLKSMHIDYTKRATGDLKAVASLTTEQIQFITQQEKGEVQVSV 139          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: A0A067BQP0_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BQP0_SAPPC)

HSP 1 Score: 127 bits (320), Expect = 2.140e-35
Identity = 63/107 (58.88%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 KVKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQV 321
            +VK+AG AG+ VE LT ++SVV + N  +VQNHIGGVHACGMAL AESA+G+V GMNV DSH+PL KSM++ + + AKG + A+ATLT  Q ++I K  KGE  V V
Sbjct:   36 QVKMAGVAGIHVETLTEQKSVVSLKNTFRVQNHIGGVHACGMALLAESASGMVFGMNVRDSHLPLLKSMSMSYVKRAKGDLKAIATLTDAQREEIAKSDKGEVLVNV 142          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: A0A485K5W2_9STRA (Aste57867_100 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5W2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.840e-34
Identity = 61/107 (57.01%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 KVKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQV 321
            +VK+AG AG+ +E L+  +SV+ + N  +VQNHIGGVHACGMAL AESATG+V GMNV DSH+PL KSM++++ + A G + AVATLT+EQ D I++  KG   V V
Sbjct:   36 QVKMAGVAGIHIESLSDSQSVLHLKNRFRVQNHIGGVHACGMALLAESATGVVFGMNVRDSHLPLLKSMSVNYVKRASGDLKAVATLTSEQRDAIQRDDKGNFVVDV 142          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: A0A2D4C6H2_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6H2_PYTIN)

HSP 1 Score: 127 bits (320), Expect = 4.600e-34
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 1
Query:    1 KVKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQV 321
            +VK+A T G+ + +L+ +R+ V + N  +VQNHIGGVHACGMAL AESATG+V GMNVPDSHIPL KSM + + R+AKG + AVA+LT EQ+ DI    +GE  V V
Sbjct:   35 QVKMAATCGIHIHDLSGDRAHVSLKNSWRVQNHIGGVHACGMALLAESATGMVFGMNVPDSHIPLIKSMTVRYKRVAKGELQAVASLTPEQIKDITSSDRGEVLVDV 141          
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Match: A0A1E7FFK6_9STRA (Thioesterase/thiol ester dehydrase-isomerase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFK6_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.710e-34
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    4 VKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESATGIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGKGEASVQV 321
            VKLAGTAG+RVE+L      V + N RKVQNHIGG+HAC MALAAESATG+++GMNVPD+HIPL KSM I+F R  +G + A A+L  +    I +  KGE  V V
Sbjct:    2 VKLAGTAGLRVEKLNKREVEVTLRNKRKVQNHIGGLHACSMALAAESATGMIVGMNVPDTHIPLIKSMNINFVRRCQGDIRATASLGEDDYKRINEDDKGEVKVDV 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137426.2636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5K5_9PHAE6.680e-5175.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSZ6_ECTSI1.030e-5075.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7T2Q8_9STRA9.010e-3863.21Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A836CKL5_9STRA6.280e-3757.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0SX00_THAOC1.430e-3659.62Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A349LV99_9GAMM4.860e-3661.32DUF4442 domain-containing protein n=1 Tax=Rheinhei... [more]
A0A067BQP0_SAPPC2.140e-3558.88Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A485K5W2_9STRA1.840e-3457.01Aste57867_100 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A2D4C6H2_PYTIN4.600e-3457.94Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A1E7FFK6_9STRA9.710e-3458.49Thioesterase/thiol ester dehydrase-isomerase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137426contigH-elongata_contig137426:139..1456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.5e-39
Seed eggNOG ortholog2880.D7FSZ6
EggNOG free text desc.Domain of unknown function (DUF4442)
EggNOG OGs2CYG0@1,2S44Y@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size324
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137426.2636.1prot_H-elongata_contig137426.2636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137426 139..1456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.8429284-CDS-H-elongata_contig137426:138..2271622929816.8429284-CDS-H-elongata_contig137426:138..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137426 139..227 -
1691679168.7373917-CDS-H-elongata_contig137426:138..2271691679168.7373917-CDS-H-elongata_contig137426:138..227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137426 139..227 -
1622929816.8617465-CDS-H-elongata_contig137426:589..7371622929816.8617465-CDS-H-elongata_contig137426:589..737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137426 590..737 -
1691679168.7497342-CDS-H-elongata_contig137426:589..7371691679168.7497342-CDS-H-elongata_contig137426:589..737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137426 590..737 -
1622929816.876755-CDS-H-elongata_contig137426:1369..14561622929816.876755-CDS-H-elongata_contig137426:1369..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137426 1370..1456 -
1691679168.756678-CDS-H-elongata_contig137426:1369..14561691679168.756678-CDS-H-elongata_contig137426:1369..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137426 1370..1456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137426.2636.1

>prot_H-elongata_contig137426.2636.1 ID=prot_H-elongata_contig137426.2636.1|Name=mRNA_H-elongata_contig137426.2636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
KVKLAGTAGVRVEELTPERSVVRVANIRKVQNHIGGVHACGMALAAESAT
GIVIGMNVPDSHIPLCKSMAIDFTRIAKGGVTAVATLTTEQLDDIKKQGK
GEASVQVS
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mRNA from alignment at H-elongata_contig137426:139..1456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137426.2636.1 ID=mRNA_H-elongata_contig137426.2636.1|Name=mRNA_H-elongata_contig137426.2636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1318bp|location=Sequence derived from alignment at H-elongata_contig137426:139..1456- (Himanthalia elongata Himel1 dioecious)
AAGGTGAAGCTGGCCGGAACCGCGGGCGTGCGAGTTGAGGAACTGACCCC CGAACGATCGGTGGTCAGAGTGGCCAACATTAGGAAGGTAGGAGGGGTTA AGCGCAGCCTGTAGTATTCAGTAGCAGCAGTATCACTCTTGAGTAAGCTA CCCATTCCGCTACCTTCCTGAAGCAAGACTTAGAGGACGCTTGTCCCGTC CCTATACGCGGTTGTATTATTAACGAAAACATATCGCTTGGTCTTGACTA GTATGTGCCCAGTAGCTGCTGCCGATCGATTACGTTGGTGAGATCCAACA ACAACCTTTTCCTTATTTACATATTTCATATTTTGACTATAGCTGATCTG ATGGTAATATTTGACAGTATGTTTGTGACATTAGGAACGGATTATGAGAT AAGGAATGGGGGATATTTTGAACTAAGTGTGGTTCTTCTATGTTCGTGAG ATTAAAAACGGATTATGAAATAAGATATGGGGGATATTTTATTCCTTATC TCATAATCCGTTCACAATCTCCCGAATATACTGTATCGCTGTGCATACTC GCAAATTCGTGCATTCGAATTTTGTTGGTGTCTTAGCAATCTACCCATGC ACGCGCCGACCACAAGAATGAGGTTTGGCCCACAGCTACATTATCTTACA CAGTTACCTTCCAATAGTTATATAGATGGTGGCGGTGGCTCCGCGCTTCG CGCCGCTCTCTGTTGACAGGTACAAAATCACATCGGGGGCGTCCACGCGT GTGGCATGGCTTTGGCAGCGGAGTCTGCAACCGGAATCGTGATAGGGATG AATGTCCCCGACAGCCACATACCTCTCTGCAAGAGTATGGCCATCGACTT CACGAGAATTGCGAAAGGTGCGGTGGAACAATATTCGGTTGTAATTCTGC TATTTGAATGCGTGATAGGTGTGGTTGTTTTGACGGCGGGACGTAGATCG ATCGACCTGCCAATTTGTTATTTTCGGAGCGAAAACCGACTGGCGGGCAA GGCAAACTTCAACCAATTATTACTGTACCGAGAAAGACTACGAGGAGGTG CCCTTGGTGGATGCAAACGTTCGACATAAATGAGTCCTTCAAAACGACAA AGTTAAAACGTATTAATACTGCGGCATCACTCGCGAAGAAATATGAACTC TCCAGCAAAGCCTTTCCACCATCTAGCTAATTCAAAATCGTCCATGTGAC TGATTTGGGGTGTACAATGGATATGTCAGGCGGCGTGACGGCCGTGGCAA CCTTGACGACTGAACAGCTGGACGACATAAAAAAACAAGGAAAAGGGGAG GCATCTGTTCAGGTAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig137426:139..1456-

>mRNA_H-elongata_contig137426.2636.1 ID=mRNA_H-elongata_contig137426.2636.1|Name=mRNA_H-elongata_contig137426.2636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig137426:139..1456- (Himanthalia elongata Himel1 dioecious)
AAGGTGAAGCTGGCCGGAACCGCGGGCGTGCGAGTTGAGGAACTGACCCC
CGAACGATCGGTGGTCAGAGTGGCCAACATTAGGAAGAAGGTGAAGCTGG
CCGGAACCGCGGGCGTGCGAGTTGAGGAACTGACCCCCGAACGATCGGTG
GTCAGAGTGGCCAACATTAGGAAGGTACAAAATCACATCGGGGGCGTCCA
CGCGTGTGGCATGGCTTTGGCAGCGGAGTCTGCAACCGGAATCGTGATAG
GGATGAATGTCCCCGACAGCCACATACCTCTCTGCAAGAGTATGGCCATC
GACTTCACGAGAATTGCGAAAGGTACAAAATCACATCGGGGGCGTCCACG
CGTGTGGCATGGCTTTGGCAGCGGAGTCTGCAACCGGAATCGTGATAGGG
ATGAATGTCCCCGACAGCCACATACCTCTCTGCAAGAGTATGGCCATCGA
CTTCACGAGAATTGCGAAAGGCGGCGTGACGGCCGTGGCAACCTTGACGA
CTGAACAGCTGGACGACATAAAAAAACAAGGAAAAGGGGAGGCATCTGTT
CAGGTAAGCGCGGCGTGACGGCCGTGGCAACCTTGACGACTGAACAGCTG
GACGACATAAAAAAACAAGGAAAAGGGGAGGCATCTGTTCAGGTAAGC
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