mRNA_H-elongata_contig13739.2634.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13739.2634.1
Unique NamemRNA_H-elongata_contig13739.2634.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13739.2634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13739contigH-elongata_contig13739:5546..6375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size165
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13739.2634.1prot_H-elongata_contig13739.2634.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13739 5546..6375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.3817976-CDS-H-elongata_contig13739:5545..55771622929816.3817976-CDS-H-elongata_contig13739:5545..5577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13739 5546..5577 +
1691679168.574522-CDS-H-elongata_contig13739:5545..55771691679168.574522-CDS-H-elongata_contig13739:5545..5577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13739 5546..5577 +
1622929816.4182174-CDS-H-elongata_contig13739:5816..58621622929816.4182174-CDS-H-elongata_contig13739:5816..5862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13739 5817..5862 +
1691679168.5845573-CDS-H-elongata_contig13739:5816..58621691679168.5845573-CDS-H-elongata_contig13739:5816..5862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13739 5817..5862 +
1622929816.4337091-CDS-H-elongata_contig13739:6288..63751622929816.4337091-CDS-H-elongata_contig13739:6288..6375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13739 6289..6375 +
1691679168.5931387-CDS-H-elongata_contig13739:6288..63751691679168.5931387-CDS-H-elongata_contig13739:6288..6375Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13739 6289..6375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13739.2634.1

>prot_H-elongata_contig13739.2634.1 ID=prot_H-elongata_contig13739.2634.1|Name=mRNA_H-elongata_contig13739.2634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
RGYDHFGNVCWQNKITKYLHYPSPLPELGAGIHFHAMKDPMSSLFLFPFK
PTCP*
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mRNA from alignment at H-elongata_contig13739:5546..6375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13739.2634.1 ID=mRNA_H-elongata_contig13739.2634.1|Name=mRNA_H-elongata_contig13739.2634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at H-elongata_contig13739:5546..6375+ (Himanthalia elongata Himel1 dioecious)
CGCGGATACGACCACTTCGGCAACGTCTGCTGGTGGGTCTTGGTATGGAT
ATATATATTAGCAATGAAAATGTTCACCTGTTCCGAGACCTTATTTGGGA
GGAAATGCGTGCTCTTGTACTCTATGAGAAGATAGCAAGCCTACACCTAT
TTTTAAAGTAGTAGTAGTCAAGCGTTTTCCCGTGTCATGACCCCCCCTGA
CCTATCTGGCCTATTTTTGTTGTCGCTTTTGACGCCCCATATGTGACATC
CGATATGCTAAATATTCATAGGCAAAACAAGATTACAAAATATCTACACT
ACCCTTCCCCCTTGCCGGTGAGTCTTCTTGGGTCTCCATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTCAGTTGGAAGGTCAACAAC
ATAGAACAATTTGGCTTTGGACCCAATTATTTTATTTGACTGCTCACTGA
TTGCTGCCTCGCAGATATATGTGATTCCAATTGCCGCCTTGCAGATGAAC
TACCTATATGTTCTCTATTAAGCGAGTGCTCTCATGTTGGTGTTACTATA
ATAACGAATGCGCTGTGTGTGTCGTGCCCATGTATGGATGTAGGAGCTCG
GTGCTGGGATTCACTTCCACGCAATGAAGGACCCCATGTCTTCTCTATTC
CTATTCCCGTTTAAACCCACGTGCCCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13739:5546..6375+

>mRNA_H-elongata_contig13739.2634.1 ID=mRNA_H-elongata_contig13739.2634.1|Name=mRNA_H-elongata_contig13739.2634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig13739:5546..6375+ (Himanthalia elongata Himel1 dioecious)
CGCGGATACGACCACTTCGGCAACGTCTGCTGCGCGGATACGACCACTTC
GGCAACGTCTGCTGGCAAAACAAGATTACAAAATATCTACACTACCCTTC
CCCCTTGCCGGCAAAACAAGATTACAAAATATCTACACTACCCTTCCCCC
TTGCCGGAGCTCGGTGCTGGGATTCACTTCCACGCAATGAAGGACCCCAT
GTCTTCTCTATTCCTATTCCCGTTTAAACCCACGTGCCCTTAGGAGCTCG
GTGCTGGGATTCACTTCCACGCAATGAAGGACCCCATGTCTTCTCTATTC
CTATTCCCGTTTAAACCCACGTGCCCTTAG
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