mRNA_H-elongata_contig137386.2633.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5L5T8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T8_9PHAE) HSP 1 Score: 140 bits (354), Expect = 6.280e-36 Identity = 87/230 (37.83%), Postives = 118/230 (51.30%), Query Frame = 1
Query: 1 MHMRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*PAKRLEHHITEYCTTLGIDPKC----WMRAAQDAPEWYRKVETG 675
M M P + AV A GQ Y Q D FVYLG TIS+ G D EI R+ A C+ + S ++YD K+ L+AE++E +LYGC +W+L+ + KL THR L RC S R D LSY + L++ CE IE V KR L +AG V R+ D+RLP ++ G M GG RG + + E G+ + W +A+D WY K+E G
Sbjct: 144 MCMLPKGLGERPFAVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDG 370
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5JCS2_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS2_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.980e-35 Identity = 85/228 (37.28%), Postives = 115/228 (50.44%), Query Frame = 1
Query: 1 MHMRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*PAKRLEHHITEYCTTLGIDPKC----WMRAAQDAPEWYRKVE 669
M M P ++ V A GQ Y Q D FVYLG IS+ G D EI R+ A C+ + S ++YD K+ L+AE++E +LYGC +W+L+ + KL THR L RC S R D LSY + L++ CE IE V KR L +AG V R+ D RLP ++ G M GG RG + EY + + W +A+D+ WY KVE
Sbjct: 43 MCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRIISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYRGGQGSDWVSRLGEYLVAFNMGDEKEGGKWKESAKDSEVWYNKVE 267
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE) HSP 1 Score: 138 bits (347), Expect = 2.140e-35 Identity = 89/230 (38.70%), Postives = 116/230 (50.43%), Query Frame = 1
Query: 1 MHMRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*PAKRLEHHITEYCTTLGI-DPKC---WMRAAQDAPEWYRKVETG 675
M M P ++ V A GQ Y Q D FVYLG IS+ G D EI R+ A CF + S ++YD P K+ L+AE++E +LYGC +W+L+ + KL THR L RC S R D LSY + L++ CE IE V KR L +AG V R+ D RLP ++ G M GG RG + E + D K W +A+D WY KVE G
Sbjct: 94 MCMLPNGIEERPFTVSAAGQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYRGRQESDWVSRLGEDLVAFNMRDEKQGGKWRESAKDPQVWYNKVEYG 320
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5L376_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L376_9PHAE) HSP 1 Score: 136 bits (342), Expect = 8.490e-35 Identity = 87/234 (37.18%), Postives = 117/234 (50.00%), Query Frame = 1
Query: 10 RPPTMKAEAVAVE-------AVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*PAKRLEHHITEYCTTLGIDPKC----WMRAAQDAPEWYRKVETG 675
R P + + V +E A GQ Y Q D FVYLG TIS+ G D EI R+ A C+ + S ++YD K+ L+AE++E +LYGC +W+L+ + KL THR L RC S R D LSY + L++ CE IE V KR L +AG V R D+RLP ++ G M GG RG + E T + + W +A+D WY KVE G
Sbjct: 61 RSPESREDDVGIEERPFTVSAAGQTYKQTDRFVYLGRTISANGKADREITSRSCRACKCYRRNSASMYDRRRADCQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRTEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVTFNVGDEKEGVKWKASAKDPEVWYNKVEDG 291
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5JZD4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD4_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.230e-34 Identity = 88/230 (38.26%), Postives = 117/230 (50.87%), Query Frame = 1
Query: 1 MHMRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*P----AKRLEHHITEYCTTLGIDPKCWMRAAQDAPEWYRKVETG 675
M M P ++ V A GQ Y Q D FVYLG TIS+ G D EI R+ A C+ + S ++YD K+ L+AE++E +LYGC +W+L+ + KL ETHR L RC S R D LSY + L++ CE IE V KR L +AG V R+ D+RLP ++ G M GG RG RL + + + W A+D WY KVE G
Sbjct: 388 MCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTTEHYAKLNETHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGAKWKECAKDPEVWYNKVEDG 614
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5KG97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG97_9PHAE) HSP 1 Score: 135 bits (339), Expect = 3.100e-34 Identity = 84/227 (37.00%), Postives = 114/227 (50.22%), Query Frame = 1
Query: 10 RPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*P----AKRLEHHITEYCTTLGIDPKCWMRAAQDAPEWYRKVETG 675
R P + ++V A GQ Y Q D FVYLG TIS+ G D EI R+ A C+ + S ++YD K+ L+AE++E +LYGC +W+L+ + KL THR L RC S R D LSY +VL++ CE IE KR L + G V R+ D RLP ++ G M GG RG RL + + + W + +D WY KVE G
Sbjct: 63 RSPESLEKMMSVTAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQVLIQAGCEETIEATARKRRLCFVGFVMRMEDSRLPKRMLSGAMAGGAGYRGGQESDWVSRLGEDLVAFNMGAEKEGGKWKESVKDPEVWYSKVENG 286
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE) HSP 1 Score: 138 bits (347), Expect = 7.460e-34 Identity = 89/230 (38.70%), Postives = 115/230 (50.00%), Query Frame = 1
Query: 1 MHMRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*PAKRLEHHITEYCTTLGI-DPKC---WMRAAQDAPEWYRKVETG 675
M M P ++ V A GQ Y Q D FVYLG TIS+ G VD EI RT A C+ + S ++YD K+ L+AE++E +LYGC +W+L+ + KL THR L RC S R D LSY + L++ CE IE V KR L + G V R+ D RLP ++ G M GG RG + E I D K W +A+D WY VE G
Sbjct: 531 MCMLPKGIEEHPFTVSAAGQTYKQTDRFVYLGRTISADGKVDREITSRTCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFVGFVVRMEDSRLPKRMLSGAMAGGVGYRGGQESDWVSRLGEDLVAFNIGDEKGAGKWKESAKDPEVWYNNVEDG 757
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.480e-33 Identity = 84/230 (36.52%), Postives = 114/230 (49.57%), Query Frame = 1
Query: 1 MHMRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*PAKRLEHHITEYCTTLGIDPKC----WMRAAQDAPEWYRKVETG 675
M M P +K V A GQ Y Q D FVYL IS+ G D EI R+ A C+ + S ++YD K+ L++E++E +LYGC +W+L+ + KL THR L RC S R D LSY + L++ CE IE V KR L +AG V R+ D+RLP ++ G M GG RG + E + + W +A+D WY KVE G
Sbjct: 1 MCMLPKGIKERPFTVSAAGQTYKQTDRFVYLERIISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRLLQSEVVETLLYGCASWSLTADHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMGGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDG 227
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5KT57_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT57_9PHAE) HSP 1 Score: 135 bits (340), Expect = 2.780e-33 Identity = 88/228 (38.60%), Postives = 114/228 (50.00%), Query Frame = 1
Query: 7 MRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDCE-CIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKRKRG*PAKRLEHHITEYCTTLGIDPKC----WMRAAQDAPEWYRKVETG 675
M P ++ V V A GQ Y Q D FVYLG TIS+ G D EI R+ A C+ + S ++YD K+ L+AE++E +LYGC +W+L+ + KL THR L RC S R D LSY +V R CE IE V KR L +AG V RI D+RLP + G M GG RG + E + + W +A+D WY KVE G
Sbjct: 301 MLPKWIERRPVTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVESLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQVPSRPGCEETIEATVRKRRLCFAGFVMRIEDNRLPKRMPLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDG 525
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.410e-32 Identity = 76/182 (41.76%), Postives = 101/182 (55.49%), Query Frame = 1
Query: 1 MHMRPPTMKAEAVAVEAVGQRYSQVDIFVYLGSTISSVGDVDPEIKRRTGYA*NCFLKYSRAVYDNPYIAVADKVCFLKAEILEVMLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVLLRTDC-ECIEVAVMKRILHYAGRVARIHDDRLPIIVMRGEMVGGKR 543
M M M+A + ++AVG + Q FVYLG I G ++ EI R A CF + S+A+YD P + KV L+AE++E +LYGCVTW L P ++ KLR H L RC R D LSY + L+ C E +E V KR L +AG VAR+ D+RLP I + GE+ GG R
Sbjct: 101 MCMLAKGMEACSFTIDAVGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIG--WKKRERKD-RPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGAR 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137386.2633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig137386.2633.1 >prot_H-elongata_contig137386.2633.1 ID=prot_H-elongata_contig137386.2633.1|Name=mRNA_H-elongata_contig137386.2633.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MLYGCVTWTLSPGDFDKLRETHRGMLRRCFNAYTSTRAAPDYHMLSYIEVback to top mRNA from alignment at H-elongata_contig137386:1066..1740- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig137386.2633.1 ID=mRNA_H-elongata_contig137386.2633.1|Name=mRNA_H-elongata_contig137386.2633.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig137386:1066..1740- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig137386:1066..1740- >mRNA_H-elongata_contig137386.2633.1 ID=mRNA_H-elongata_contig137386.2633.1|Name=mRNA_H-elongata_contig137386.2633.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig137386:1066..1740- (Himanthalia elongata Himel1 dioecious)back to top |