mRNA_H-elongata_contig137371.2631.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137371.2631.1
Unique NamemRNA_H-elongata_contig137371.2631.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137371.2631.1 vs. uniprot
Match: A0A7S2BFW4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFW4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.380e-5
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   46 AFSSVSHLKENLDSLSFAIGLRKKGGQEGELE---RLLPMLKIQP---------RPNEVGYSECRHPDCIVREDKIKKL 246
            A+SS SH+ EN+D LSFA+GLR  G ++   E   R++PM +I P         + +E    EC +P+C+ R+D+ ++L
Sbjct:   23 AYSSFSHI-ENIDDLSFAVGLRY-GDEDDVTEAIGRIIPMSRILPGKPAQQRGGQKDEGSLEECDNPECLARQDRYREL 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137371.2631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2BFW4_9STRA1.380e-537.97Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137371contigH-elongata_contig137371:112..1385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_004310.1
Exons3
Model size336
Cds size336
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137371.2631.1prot_H-elongata_contig137371.2631.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137371 112..1385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.1449635-CDS-H-elongata_contig137371:111..2961622929816.1449635-CDS-H-elongata_contig137371:111..296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137371 112..296 +
1691679168.5069792-CDS-H-elongata_contig137371:111..2961691679168.5069792-CDS-H-elongata_contig137371:111..296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137371 112..296 +
1622929816.1575553-CDS-H-elongata_contig137371:981..10511622929816.1575553-CDS-H-elongata_contig137371:981..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137371 982..1051 +
1691679168.5145974-CDS-H-elongata_contig137371:981..10511691679168.5145974-CDS-H-elongata_contig137371:981..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137371 982..1051 +
1622929816.1824796-CDS-H-elongata_contig137371:1304..13851622929816.1824796-CDS-H-elongata_contig137371:1304..1385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137371 1305..1385 +
1691679168.5225384-CDS-H-elongata_contig137371:1304..13851691679168.5225384-CDS-H-elongata_contig137371:1304..1385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137371 1305..1385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137371.2631.1

>prot_H-elongata_contig137371.2631.1 ID=prot_H-elongata_contig137371.2631.1|Name=mRNA_H-elongata_contig137371.2631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
QQRPQKAFESGNVRDAFSSVSHLKENLDSLSFAIGLRKKGGQEGELERLL
PMLKIQPRPNEVGYSECRHPDCIVREDKIKKLQELTEKEKDGLEQLTSEI
ESLKVSAQRES*
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mRNA from alignment at H-elongata_contig137371:112..1385+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137371.2631.1 ID=mRNA_H-elongata_contig137371.2631.1|Name=mRNA_H-elongata_contig137371.2631.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1274bp|location=Sequence derived from alignment at H-elongata_contig137371:112..1385+ (Himanthalia elongata Himel1 dioecious)
CAGCAGCGTCCGCAAAAGGCGTTTGAAAGCGGCAACGTTCGAGACGCCTT
TTCGAGCGTGTCGCACCTCAAAGAGAATCTTGACTCTTTGTCGTTTGCCA
TCGGACTGCGAAAGAAGGGGGGTCAAGAGGGAGAACTAGAGCGGTTGCTG
CCCATGCTCAAGATCCAGCCACGGCCAAACGAGGTGTGTGTGTGTGTGTG
TGTATGCGTGTGTCGGGCGCAAGGCCGAGGGAACAATGACGTGCGCAAGC
GTGCCGTTCCAAAGGATATGTCGCTGTGTTGCGCTTGGAATATAGTGTAG
TCCTCCGATTCACGTTCAACTGTCGCACCACACGCCCCGAAATAATCGGC
AAGGTATTCGAGGTGGTGTTCTATGTTGTCTCCGTGCGGCTGCACAATAC
GCCGGCTTTATTCTGCGCTATGCAGCCATCGGTCGGTAGCGTCTCGCCAT
CAAGCAGAACCACCATCATTACACTACACTACACCCTTAACTAAGTATAT
CATGCTTTAATAACCTACAACGGATAATCGATCGGTGCGTGGCAATTTGC
TGGAAATCTTCAGCCAGGCCGTCGGGGCGGCAAACCAAGGTGAAGATTGG
ACGACGTATCGACGGGTATGCCACCGTTTTATTCCACCAGGGTCAGCGGT
TTCTAGGTTGCGAGTCATGTTGGGGCTTGGAGAGGAACAACATACTTTTT
AAATGGAGGATCTCCGTTCAGAGAAGTATCCTCTTCCCGCCTTCCTCCGC
CAGCGTGCCTCGGAAATATTGCGCGAAACACCCCCGTGTCACACTCTCCC
GCAACCGCAAGCCCTAAAACGCGTGGCTTGGCGCCAACGACCGCCGAACC
GCTTGTGTTATCGACCGCAGGGGATACTCGGAGTGTCGCCACCCGGACTG
TATCGTGCGAGAAGATAAAATCAAGAAGCTCCAGGAGCTGGTAGGGTTGG
CTTGAGACGGCATTGAGCAGCTCAAGTTAGCTTTCGTCTAAAACAAAAAC
ATGGCCCCCTTGTAGAGATCGGTCCACGATAGTTCACGACAGGAGTTGTG
GTAAATGAATGGCCACGTCTTTCTGTTCCAGCACCCGTGCCATCGCCAGT
GCTCCCTCCCCCACCCCCTCCCTCCTTCGAGGTTTGCCCGATTTTCTTTT
TGTGGCACGCGCACGTACGGGCTCCGATGCTCCGACAAAGCAGACCGAAA
AAGAAAAAGACGGGTTAGAGCAGCTCACGTCCGAGATAGAATCTCTCAAG
GTGAGCGCGCAAAGGGAGTCATAG
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Coding sequence (CDS) from alignment at H-elongata_contig137371:112..1385+

>mRNA_H-elongata_contig137371.2631.1 ID=mRNA_H-elongata_contig137371.2631.1|Name=mRNA_H-elongata_contig137371.2631.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig137371:112..1385+ (Himanthalia elongata Himel1 dioecious)
CAGCAGCGTCCGCAAAAGGCGTTTGAAAGCGGCAACGTTCGAGACGCCTT
TTCGAGCGTGTCGCACCTCAAAGAGAATCTTGACTCTTTGTCGTTTGCCA
TCGGACTGCGAAAGAAGGGGGGTCAAGAGGGAGAACTAGAGCGGTTGCTG
CCCATGCTCAAGATCCAGCCACGGCCAAACGAGGTCAGCAGCGTCCGCAA
AAGGCGTTTGAAAGCGGCAACGTTCGAGACGCCTTTTCGAGCGTGTCGCA
CCTCAAAGAGAATCTTGACTCTTTGTCGTTTGCCATCGGACTGCGAAAGA
AGGGGGGTCAAGAGGGAGAACTAGAGCGGTTGCTGCCCATGCTCAAGATC
CAGCCACGGCCAAACGAGGTGGGATACTCGGAGTGTCGCCACCCGGACTG
TATCGTGCGAGAAGATAAAATCAAGAAGCTCCAGGAGCTGGGGATACTCG
GAGTGTCGCCACCCGGACTGTATCGTGCGAGAAGATAAAATCAAGAAGCT
CCAGGAGCTGACCGAAAAAGAAAAAGACGGGTTAGAGCAGCTCACGTCCG
AGATAGAATCTCTCAAGGTGAGCGCGCAAAGGGAGTCATAGACCGAAAAA
GAAAAAGACGGGTTAGAGCAGCTCACGTCCGAGATAGAATCTCTCAAGGT
GAGCGCGCAAAGGGAGTCATAG
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